sanger-trace-alignment

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.

Patching references via trace assemblies

Sanger Trace Alignment

ChromaZ is a cross-platform desktop C++/Qt6 application for contig assembly, Sanger sequencing chromatogram visualization, multiple sequence alignment, and bioinformatics analysis of nucleotide and amino acid sequences.

Standalone pipeline for processing paired Sanger .ab1 chromatograms into cleaned sequences, MSA, identity clustering, and a phylogenetic tree