Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
In-silico PCR, primer design and padlock design for in-situ sequencing
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.
sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Tail-PCR/Sanger Tn5 insertion-site mapping, annotation, clustering, and visualization.
In-silico PCR amplification on complete genomes
Patching references via trace assemblies
A tool to batch-generate optimal DNA primers for Sanger sequencing. Output .xlsx file is directly compatible with IDT Oligo Entry.
A local API-based biological engine that uses Tracy for sequence alignment and VEP for variant annotation. Built with Python for computational biology and bioinformatics analysis.
一款专为 Sanger 测序设计的多重比对工具。支持批量整合同一样品不同片段的测序数据，进行一次性全局比对与交叉印证，并实时可视化测序深度与序列覆盖度。 A Sanger sequencing multi-alignment tool for cross-validating multi-segment sequencing data from the same sample with intuitive coverage visualization.
Comprehensive Sanger sequence analysis and clinical reporting tool. Identifies SNVs and Indels precisely while keeping your genetic data secure locally.
Automated DNA barcoding pipeline: chromatogram → phylogeny → species ID. Zero coding required. Built for ENTM201L @ UC Riverside. Docker + GitHub Classroom ready.
Historical archive: Python 2.7-era tool for checking Sanger sequencing results against references. Not maintained.
GEAR home page
World-class, high-performance web viewer for Sanger sequencing traces (.ab1/.scf): chromatogram rendering, base calls, quality scores. Client-side, hosted on GitHub Pages.
シーケンス簡易アセンブリスクリプト Simple Sequence Assembly Script
ChromaZ is a cross-platform desktop C++/Qt6 application for contig assembly, Sanger sequencing chromatogram visualization, multiple sequence alignment, and bioinformatics analysis of nucleotide and amino acid sequences.
Extract and distribute ab1 files from Sanger DNA sequencing to folders of their respective owners.
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