variantcalling

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

A pipeline for somatic variantcalling. Category:Single-Sample

Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

Variant calling pipeline for WES data of a MOPD-II affected neonate, as part of a rare disease case study. This project demonstrates a reproducible analysis framework for rare disease genomics research.

variantcalling

A Nextflow DSL2 pipeline for de novo SARS-CoV-2 genome assembly from Illumina short reads.