R client for the OmniPath web service
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Aug 3, 2026 - R
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pathways
Here are 104 public repositories matching this topic...
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
pathways interpretability pathology mahmoodlab histology-transcriptomics pathology-genomics pathology-representation survpath
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Nov 19, 2024 - Python
pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
python data machine-learning data-mining graph analysis model-selection networks temporal-networks graphical-models pathways network-analysis sequential-data multi-order temporal-correlations
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May 2, 2020 - Python
MSigDB gene sets for multiple organisms in a tidy data format
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Aug 20, 2026 - R
A web application to visualize and edit pathway models
visualization editor bioinformatics biology layout systems-biology pathways network-visualization pathway-analysis newt web-based-visualization sbml sbgn sif pathway-models celldesigner
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Sep 3, 2026 - JavaScript
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
graphviz bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis cancer-pathways
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Mar 18, 2024 - TypeScript
Caleydo - Visualization for Molecular Biology
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Dec 15, 2016 - Java
A project for exploring differentially active signaling paths related to proteomics datasets
bioinformatics computational-biology proteomics pathways phosphoproteomics causality-analysis pathway-analysis
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Apr 2, 2026 - Java
Graph-based modeling environment for biology, including prototype editor and services
annotation owl ontology pathways curation geneontology functional-annotation monarchinitiative noctua noctua-models go-cam ai4curation
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Aug 21, 2026 - JavaScript
The ideal tool for exploring global marine biogeochemical cycles.
awesome optimization model julia modeling models ocean transport oceanography global tracer pathways marine biogeochemistry inverse-model biogeochemical-model ocean-circulation fluxes biogeochemical marine-tracer
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Aug 4, 2026 - Julia
A web based visualization tool for process description maps in SBGN
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Aug 28, 2026 - JavaScript
Pathfinder is a tool for the visual exploration of paths in large graphs.
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Aug 28, 2018 - JavaScript
R package for WikiPathways API
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Nov 3, 2025 - HTML
Harmonizing pathway databases using Biological Expression Language (BEL)
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Jul 1, 2024 - Python
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering
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Oct 30, 2020 - Perl
PHOsphoproteomic dissecTiOn using Networks
bioinformatics biology proteomics biological-data-analysis signaling-pathways pathways phosphoproteomics phosphorylation signaling-networks
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Jan 25, 2021 - Python
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
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Jun 24, 2026 - JavaScript
Package to calculate functional similarity between genes https://biocor.llrs.dev
bioinformatics gene gene-sets similarity similarity-measurement pathways bioconductor-packages pathway-analysis functional-similarity
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Sep 1, 2026 - R
A web application for exploring, analyzing, and curating pathway databases
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Aug 12, 2023 - JavaScript
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
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Feb 11, 2022 - Python
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