Ancestral character reconstruction and visualisation for rooted phylogenetic trees
A couple of tools I find indispensable for post orthomcl down-stream analysis.
One-step TNT script for maximum parsimony phylogenetic analysis https://doi.org/10.11646/zootaxa.5642.1.10
Phylogeny estimation from binary characters via Dollo parsimony
Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters
Computational Biology Assignments
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
SCJ small parsimony problem for weighted gene adjacencies
www starter 🦕
Tests to explore the use of the inapplicable algorithm of Brazeau, Guillerme & Smith (2019)
A Claude Code subagent that asks: do we actually need this complexity?
An efficient algorithm for parsimony-based reconstructions of the evolutionary history of individual metabolic pathways.
Welcome to the master repository for gmgcode.
Implementation of the InOutParsimony algorithm for solving the Small Gain-Loss Phylogeny problem
AI agent framework for data analysis with code execution
Connectors for parsimony — FRED, SDMX, FMP, SEC Edgar, Polymarket, and more. Each publishes as its own PyPI package.
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