ont

CLI tool for flexible and fast adaptive sampling on ONT sequencers

Assembly and intrahost/low-frequency variant calling for viral samples

ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Unifi UDM Pro Iszo XPON UNO Verizon FiOS

Exploit Huawei ONT device, only support r019. You need to compile kernel module getshell.ko for r018 or r017 by yourself.

Clair3-RNA - a long-read small variant caller for RNA sequencing data

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

GUI for inspecting POD5 files

Basecalling configuration prediction through FASTQ files

start shell scripts on hs8145x6 with full root privilege

Extract methylation calls from long reads (ONT/ PacBio)

This tool decrypts and encrypts configuration file downloaded from the ONT's web interface

ITS region extraction for long-read amplicon sequencing

DDM-grade telemetry from HSGQ/ODI GPON SFP ONUs over SSH - Prometheus exporter + Grafana dashboard

A comprehensive telomere annotation tool for genome assemblies and graphs.

Notes and scripts on Airtel's Dasan H680GM-A XPON ONT / Router

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data

Wrapper to read fast5, slow5, blow5 and pod5 files.

A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals