nma

Network and Device Scanning Tool

This repository contains code and notebooks for Neuromatch Academy (NMA2025) Computational Neuroscience course project analyzing the Allen Institute Visual Behavior 2-Photon (2P) dataset.

MODE-TASK plugin for PyMOL

Visualize Multi-Component Interventions in Network Meta-Analysis

Reproduce the results from the paper: "Decision Curve Analysis for Personalized Treatment Choice between Multiple Options. K. Chalkou, et. al. Med Decis Making . 2023 Apr;43(3):337-349. doi: 10.1177/0272989X221143058." This methodological paper describes the methods for evaluating the clinical utility of prediction model with multiple treatments.

Reproduce results feom the paper "A two-stage prediction model for heterogeneous effects of treatments. K. Chalkou, et. al. Statistics in Medicine. 2021 Sep 10;40(20):4362-4375. doi: 10.1002/sim.9034"

Stochastic Search Inconsistency Factor Selection

Scans a network segment for obsolete TLS, cleartext telnet/FTP, and SMBv1/MS17-010 exposure. Single Go binary, CLI + web dashboard.

This repository provides a fully reproducible R script for random‑effects network meta‑analysis of continuous outcomes, including data preparation, inconsistency assessment, treatment ranking, and publication bias evaluation.

Bayesian NMA of advanced NSCLC treatments across 10 studies using gemtc and JAGS — fixed/random effects models, DIC model selection, SUCRA rankings, full league table, node-splitting consistency check, and heterogeneity estimation for NICE STA submissions.

Elastic Network Model computation featuring GPU acceleration and parallel processing

Web page for NoMoreAnalog root domain

Reproduce results from the paper "Combining randomized and non-randomized data to predict heterogeneous effects of competing treatments."

Living Network Meta-Analysis engine — frequentist NMA in the browser. Graph-theoretic NMA (Rücker 2012), node-splitting consistency checks, P-scores.