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microbe

Here are 9 public repositories matching this topic...

tientq64 / particle-life-2d

🦠 Life is made up of elementary particles.

simulator life simulation physics particles force cells atoms 3d microbe primordial-soup

Updated Nov 18, 2024
TypeScript

tracykuper / mimics

Multi-scale model of Metabolism In Cellular Systems

python java hal cells metabolism agent-based bacteria transcriptomics cobrapy multi-scale microbe

Updated Jan 24, 2024
Java

BCCDC-PHL / covflo

Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

nextflow phylogenetics trees viral evolutionary nextstrain auspice sars-cov-2 microbe

Updated Mar 25, 2026
Python

turbomam / cmm-ai-automation

AI-assisted automation for Critical Mineral Metabolism data curation using LinkML and KGX

python knowledge-graph biolink kgx microbe linkml critical-minerals

Updated Jun 23, 2026
Python

brinkmanlab / MicrobeDB

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

database genbank bacteria ncbi cvmfs refseq archaea microbe

Updated Sep 21, 2022
Shell

raghavagps / SalivaDB

SalivaDB: A Comprehensive Database for Salivary Biomarkers in Humans

human protein mirna biomarkers metabolites salivary microbe

Updated May 8, 2026

wrf / microbe-ethanol

examination of microbial tolerance to ethanol

data-visualisation ethanol microbe misconception antiseptic

Updated Nov 19, 2021
R

UWInSpace / InSpace

UW Interstellar iN-Situ Predictive Algorithm for Cellular Engineering (InSpace) aims to predict gene expression for proteins-of-interest to spaceflight conditions. Data sourced from NASA GeneLab.

space bacteria nasa-genelab microbe transcriptional-data spaceflight-conditions gene-homologs

Updated Mar 17, 2021
Jupyter Notebook

bioatmosphere / microbiome-thermal-extreme

TeMD(Thermal Extreme, Microbiome, and Decomposition) with DEMENTpy at Walker Branch Watershed, Oak Ridge, Tennessee

ecosystem climate decomposition heat soil-carbon microbe dementpy

Updated Mar 28, 2024
Jupyter Notebook

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