manuscript-code

Code and data for the paper “An analysis of the cloud environment over the Ross Sea and Ross Ice Shelf using CloudSat/CALIPSO satellites: The importance of Synoptic” by Jolly et al. (2018)

More detailed growth models using inference.

Code for the paper “Climate model code genealogy and its relation to climate feedbacks and sensitivity” by Kuma et al. (2023)

Dissecting systems serology with a tensor factorization

Code and data for the paper “Direct radiative effects of airborne microplastics” by Revell et al. (2021)

Study Fc antibody dynamics using a multivalent binding model

A binding-reaction model for the common gamma chain receptor cytokines.

A Multivalent Binding Model for FcgRs

This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.

Code for the paper “Machine learning of cloud types in satellite observations and climate models” by Kuma et al. (2023)

The structure is the message: preserving experimental context through tensor decomposition

一个出图+组图skill，附带一整套svg工具

Trafficking model of FcRn to explain the effects of failed release at the cell surface.

Clusters phosphoproteomics data by sequence and abundance dynamics

Inferring antibody species from systems serology with a mechanistic binding model.

Code for the ICON large-eddy simulation contribution to the COMBLE-MIP project (Juliano et al., 2026)

R package for “Semiparametric Principal Stratification Analysis Beyond Monotonicity” by Jiaqi Tong, Brennan Kahan, Michael O. Harhay, and Fan Li. Statistica Sinica, in press.

Reproducible analysis for between-visit cerebrovascular and cardiovascular responses during the cold pressor test

A modeling perspective on cell selective ligands