fibroblasts

Here are 5 public repositories matching this topic...

jamrute / immune-fibroblast-heart-failure

Analysis code for Amrute, Luo et al., Nature (2024): CITE-seq, single-nucleus multiome and spatial transcriptomics of human heart failure identifying FAP+/POSTN+ fibroblasts and IL-1b-driven immune-fibroblast communication.

immunology single-cell heart-failure seurat spatial-transcriptomics cite-seq archr multiome fibroblasts cardiac-fibrosis

Updated Sep 11, 2026
R

csbg / fibroblast-perturb-seq-analysis

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Epigenetic regulators of fibrotic transformation in cardiac fibroblasts

scrna-seq scatac-seq fibroblasts perturb-seq cardiac-fibrosis

Updated Jan 14, 2026
Jupyter Notebook

jriya186 / ovarian-caf-rnaseq-analysis

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Nextflow DSL2 RNA-seq pipeline analyzing CAF reprogramming in ovarian cancer (GSE280564)

docker bioinformatics nextflow caf gcp cancer-genomics rnaseq ovarian-cancer fibroblasts

Updated Jun 23, 2026
HTML

CarloGalliUnipr / PEMF-Fibroblast-Repair-State-Model

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A dynamical systems model of fibroblast state transitions under pulsed electromagnetic field (PEMF) stimulation, linking migration, matrix production, metabolic activity, and repair-associated functional states.

dynamical-systems regenerative-medicine cell-migration mathematical-modeling electromagnetic-fields wound-healing fibroblasts wound-healing-assay tissue-repair

Updated Jun 7, 2026
Python

ATA82 / ATAC_Reprogramming_of_Fibroblasts

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ATAC-Seq analysis. (Ali T. Abdallah)

docker targets atac-seq-pipeline renv leukemia atac-seq-data fibroblasts

Updated Jul 25, 2025
R

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