MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
A python package to process protein cross-linking data.
Export MS Annika crosslink results to different formats.
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
Extensions for better usability of the cross-linking tool MaXLinker.
A comprehensive user guide for pyXLMS built with Nextra.
Results, figures, and code for the manuscript of pyXLMS.
List of all available extensions for our cross-linking search engine MS Annika.
Repository containing scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.
Generate a spectral library for Spectronaut from MS Annika results.
Pydantic version of pyXLMS [merged into main pyXLMS in v2.0.0]
Short talk presentation, poster and abstract for APMRS-CEEPC 2024
Short Talk Presentation for APMRS 2022
A comprehensive user guide for pyXLMS built with Nextra.
Link to the web application for pyXLMS.
Helper scripts for crosslink analysis.
Rescoring of Spectronaut Crosslinking Results with Mokapot.
A template repository for python scripts and projects using pyXLMS.
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
🌐 Build and browse the MS Annika webpage using Nextra for streamlined documentation and easy access to project resources.
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