biomedical-ontologies

Here are 9 public repositories matching this topic...

rcolinp / clinical_informatics_umls

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

python neo4j rdf semantic-web ontology biomedical-informatics interoperability knowledge-graph graph-database umls py2neo neosemantics biomedical-ontologies medical-terminology

Updated Mar 20, 2024
Python

PROconsortium / PRoteinOntology

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obo obofoundry biomedical-ontologies protein-ontology

Updated Oct 5, 2026
HTML

lias-laboratory / biogitom

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BioGITOM: Matching Biomedical Ontologies with Graph Isomorphism Transformer

deep-learning ontology-matching graph-neural-networks graph-transformer biomedical-ontologies graph-isomorphism-transformer

Updated Jul 9, 2026
Jupyter Notebook

besteves4 / duo-odrl-dpv

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Repository with ODRL policies for DUO concepts and demo implementation of the odrl:Offer - odrl:Request matching algorithm for DUO

policy health-data gdpr odrl dpv biomedical-ontologies regulatory-compliance data-use-ontology

Updated Oct 21, 2024
Python

bio-ontology-research-group / EmbedPVP

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EmbedPVP: Embedding-based Phenotype Variant Predictor

bioinformatics variant-analysis neuro-symbolic biomedical-ontologies prioritization-algorithm genomic-variants knowledge-enhanced-learning

Updated Apr 4, 2024
Python

monarch-initiative / pheval.llm

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Analysis of LLMs for Clinical Observations

hpo monarchinitiative phenopackets clinical-diagnosis biomedical-ontologies rare-diseases large-language-models

Updated May 15, 2026
Python

sap218 / ocimido

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An ontology for ocular immune-mediated inflammatory diseases

owl ontology disorder synonyms disease tf-idf diseases ophthalmology inflammatory inflammation ocular biomedical-ontologies layman-terms patient-voice

Updated Oct 15, 2021

terravic / embl-ebi-ols-skill

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Agent Skill for querying, traversing, and visualizing 250+ biomedical ontologies (GO, DOID, HP, MONDO, CHEBI, CL, UBERON) via the EMBL-EBI Ontology Lookup Service (OLS4) REST API with interactive 3D network, D3.js 2D DAG hierarchy, and lineage tree HTML5 dashboards.

Updated Oct 2, 2026
Python

sap218 / coid

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Combined Ontology for Inflammatory Diseases

owl ontology disorder disease phenotype phenotypes diseases disorders inflammatory inflammation biomedical-ontologies

Updated Apr 20, 2022

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