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leppott / BioMonTools

Star

Tools for biomonitoring and bioassessment; metric calculation for benthic macroinvertebrates, fish, and periphyton.

fish metric r-package rbp benthic bioassessment biomonitoring macorinvertebrates periphyton

Updated Aug 27, 2026
R

rBatt / trawlData

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Collate and clean bottom trawl survey data

data noaa ecology biodiversity coastal marine long-term bottom-trawl demersal benthic northamerica dfo

Updated Jun 24, 2018
R

daltare / cedenTools

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R package for retrieving data from the California Environmental Data Exchange Network (CEDEN) via CEDEN's web services.

tissue api-client open-data water-quality habitat water data-retrieval toxicity benthic

Updated Jul 7, 2022
R

leppott / MBSStools

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Suite of tools for data manipulation and calculations for Maryland DNR MBSS program.

metric r-package mmi ibi benthic mbss bioassessment macroinvertebrates

Updated Feb 25, 2025
HTML

Jordan-Pierce / Benthic-Toolbox

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Repository for creating object detection and instance segmentation models for deep-sea benthic habitats.

python machine-learning object-detection instance-segmentation benthic coral-reefs tator

Updated Apr 18, 2024
Python

edwardlavender / westcoms_validation

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R code supporting Lavender et al. (2022). Benthic animal-borne sensors and citizen science combine to validate ocean modelling. Scientific Reports, 12, 16613. https://doi.org/10.1038/s41598-022-20254-z

r ocean modelling citizen-science benthic fvcom westcoms

Updated Oct 5, 2022
R

hdoi5324 / infinigenBenthic

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Generation of synthetic images and bounding box annotations siumulating underwater benthic surveys.

object-detection auv benthic

Updated Sep 16, 2025
Python

haniehsaeedi / Deep-Arctic-Diversity-Data-Analyses

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This repository includes all the R scripts and the final cleaned dataset used in our in-preparation paper, The emerging picture of a diverse deep Arctic Ocean seafloor: from habitats to ecosystems. The dataset (ArcticBenthicData) includes data from our sampling, open-access data, and data derived from literature and must be cited following the MS.

ecosystem arctic habitat biodiversity benthic biodiversity-data antroposcene