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[pre-commit.ci] pre-commit autoupdate #201

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ilia-kats merged 2 commits into from
Sep 21, 2026
+6 −4
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[pre-commit.ci] pre-commit autoupdate #201

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3afcc74
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Sep 21, 2026
8dba8ba
silence anndata Zarr format deprecation warning
ilia-kats Sep 21, 2026
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4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ default_stages:
minimum_pre_commit_version: 2.16.0
repos:
- repo: https://github.com/biomejs/pre-commit
rev: 992342fc7460b8fe94b98b7e2f3e811d0bebdc5c # frozen: v2.5.13
rev: 221fa73eac76e0540995318b44e2efb2774af990 # frozen: v2.5.14
hooks:
- id: biome-format
exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
Expand All @@ -16,7 +16,7 @@ repos:
hooks:
- id: pyproject-fmt
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: e8f7d69b957a30acb2c875078d5fd012de24b64c # frozen: v0.16.7
rev: 2eeb5678de71a00c0902cbda7105d328432f72cb # frozen: v0.16.8
hooks:
- id: ruff-check
types_or: [python, pyi, jupyter]
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6 changes: 4 additions & 2 deletions src/mudata/_core/io.py
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Expand Up @@ -14,7 +14,7 @@
import re
from contextlib import ExitStack
from pathlib import Path
from warnings import warn
from warnings import catch_warnings, filterwarnings, warn

import anndata as ad
import h5py
Expand Down Expand Up @@ -131,7 +131,9 @@ def write_zarr(

from .. import __anndataversion__, __mudataversion__, __version__

zarr_format = getattr(ad.settings, "zarr_write_format", 2)
with catch_warnings():
filterwarnings("ignore", message="This setting will be removed", category=DeprecationWarning)
zarr_format = getattr(ad.settings, "zarr_write_format", 3)

if isinstance(data, AnnData):
adata = data
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