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  1. lightweight-registration lightweight-registration Public

    lwreg is a lightweight registration system for chemical registration and data storage.

    Jupyter Notebook 92 20

  2. Ensembler Ensembler Public

    Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method development or to deepen understanding of a broad spectrum of model…

    Python 59 9

  3. GNNImplicitSolvent GNNImplicitSolvent Public

    Implicit Solvent Approach Based on Generalised Born and Transferable Graph Neural Networks for Molecular Dynamics Simulations

    Jupyter Notebook 56 9

  4. overlapping_assays overlapping_assays Public

    Code and datasets from the manuscript "Comparing IC50 or Ki values from different sources is a source of significant noise".

    Jupyter Notebook 52 10

  5. GHOST GHOST Public

    Jupyter Notebook 51 13

  6. amp_bms amp_bms Public

    Python 51 8

Repositories

Showing 10 of 56 repositories
  • DASH-tree Public

    Partial Charge assignment for Molecular Dynamics

    rinikerlab/DASH-tree's past year of commit activity
    Python 24 MIT 6 0 2 Updated Aug 11, 2026
  • gromosXX Public Forked from biomos/gromosXX

    md++ code

    rinikerlab/gromosXX's past year of commit activity
    C++ 2 GPL-2.0 8 0 0 Updated Jul 27, 2026
  • rinikerlab/geometrical_EDS's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 25, 2026
  • SmoothTransformationWithEDS Public

    Code to run and analyze the data for the article "Smoother Alchemical Transformations via Enveloping Distribution Sampling for Free-Energy Estimation"

    rinikerlab/SmoothTransformationWithEDS's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 22, 2026
  • QM-GNNIS Public

    Graph Neural Network Based Implicit QM Solvent

    rinikerlab/QM-GNNIS's past year of commit activity
    Jupyter Notebook 8 MIT 3 0 0 Updated Jul 18, 2026
  • amp_qmmm Public
    rinikerlab/amp_qmmm's past year of commit activity
    Python 7 MIT 2 0 0 Updated Jul 17, 2026
  • amp_bms Public
    rinikerlab/amp_bms's past year of commit activity
    Python 51 MIT 8 2 0 Updated Jul 17, 2026
  • ChEMBL_MTL Public

    Evaluation of data curation strategies for bioactivity prediction using ChEMBL data

    rinikerlab/ChEMBL_MTL's past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Jun 24, 2026
  • rinikerlab/MAPRE1-FKBP12-Molecular-Glue's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 14, 2026
  • TorsionAngularBinStrings Public

    Torsion Angular Bin Strings: Quantifying flexibility by introducing a discrete vector representation of a conformer's dihedral angles to allow for counting of states.

    rinikerlab/TorsionAngularBinStrings's past year of commit activity
    Jupyter Notebook 17 MIT 3 0 0 Updated Jun 5, 2026

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