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@qupath

QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.4k 361

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 23 27

  3. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 10 7

  4. qupath-extension-instanseg qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    Java 29 5

  5. qupath-extension-omero qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    Java 9 3

  6. qupath-extension-template qupath-extension-template Public template

    Template to help create a new QuPath extension

    Java 21 16

Repositories

Showing 10 of 51 repositories
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath's past year of commit activity
    Java 1,437 GPL-3.0 361 31 4 Updated Sep 8, 2026
  • qupath-docs Public

    QuPath documentation

    qupath/qupath-docs's past year of commit activity
    Python 23 27 7 1 Updated Sep 8, 2026
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero's past year of commit activity
    Java 9 Apache-2.0 3 4 0 Updated Sep 8, 2026
  • actions Public

    GitHub actions for QuPath and related repositories

    qupath/actions's past year of commit activity
    Shell 0 Apache-2.0 1 0 0 Updated Sep 8, 2026
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog's past year of commit activity
    1 Apache-2.0 3 0 0 Updated Aug 18, 2026
  • qupath-fxtras Public

    Reusable JavaFX tools for QuPath (and beyond)

    qupath/qupath-fxtras's past year of commit activity
    Java 6 Apache-2.0 3 1 1 Updated Aug 17, 2026
  • qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    qupath/qupath-extension-bioimageio's past year of commit activity
    Java 5 Apache-2.0 3 3 0 Updated Aug 10, 2026
  • qupath.github.io Public

    GitHub pages site

    qupath/qupath.github.io's past year of commit activity
    SCSS 2 MIT 5 0 0 Updated Aug 9, 2026
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    qupath/qupath-extension-instanseg's past year of commit activity
    Java 29 Apache-2.0 5 6 0 Updated Jul 2, 2026
  • models Public

    Trained models for use with QuPath

    qupath/models's past year of commit activity
    16 3 0 0 Updated Jun 25, 2026
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