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µManager

Home for Open Source Microscope Automation Software Development

Micro-Manager

Micro-Manager started out as an application to control microscope hardware, such as cameras, xy-stages, filter wheels, etc. It includes a hardware abstraction layer written in C++ that is now used in several projects including the original user interface written in Java that is distributed as an ImageJ plugin.

Go to micro-manager.org for documentation and binary downloads.

For support, see Micro-Manager Community.

The Micro-Manager community welcomes you! For our governance structures, go here

Repositories

Python compatility

Several projects provide access to Micro-Manager code from Python. Pycro-manager creates an interprocess bridge between the "classical" Micro-Manger running in a Java Virtual Machine and Python. Pymmcore exports the MMCore interface directly to Python. Pymmcore is used by various Python packages such as pymmcore-plus, located in a github organization that contains several User Interfaces witten in Python to interface with MMCore (pymmcore-widgets, napari-micro-manager).

Contributing

Start here.

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  1. micro-manager micro-manager Public

    Microscope control and image acquisition integrated with ImageJ

    Java 322 251

  2. pycro-manager pycro-manager Public

    Python control of micro-manager for customized data acquisition

    Jupyter Notebook 187 55

  3. mmCoreAndDevices mmCoreAndDevices Public

    Micro-Manager's device control layer, written in C++

    C++ 65 139

  4. micro-manager.github.io micro-manager.github.io Public

    Micro-Manager website source

    JavaScript 8 53

  5. pymmcore pymmcore Public

    Python bindings for MMCore, Micro-Manager's device control layer

    Python 35 13

  6. futureMMCore futureMMCore Public

    Place to discuss the future design of a universal microscope hardware interface

    17 1

Repositories

Showing 10 of 27 repositories
  • micro-manager/LightSheetManager's past year of commit activity
    Java 1 BSD-3-Clause 4 12 0 Updated Sep 8, 2026
  • micro-manager.github.io Public

    Micro-Manager website source

    micro-manager/micro-manager.github.io's past year of commit activity
    JavaScript 8 53 14 2 Updated Aug 28, 2026
  • micro-manager Public

    Microscope control and image acquisition integrated with ImageJ

    micro-manager/micro-manager's past year of commit activity
    Java 322 251 141 (1 issue needs help) 17 Updated Aug 28, 2026
  • apidoc Public

    API documentation site for Micro-Manager

    micro-manager/apidoc's past year of commit activity
    Shell 0 0 1 0 Updated Aug 27, 2026
  • mmCoreAndDevices Public

    Micro-Manager's device control layer, written in C++

    micro-manager/mmCoreAndDevices's past year of commit activity
    C++ 65 139 105 25 Updated Aug 26, 2026
  • pymmcore Public

    Python bindings for MMCore, Micro-Manager's device control layer

    micro-manager/pymmcore's past year of commit activity
    Python 35 LGPL-2.1 13 6 3 Updated Aug 10, 2026
  • mmdevice Public

    Experimental mirror; 'main' may be reset

    micro-manager/mmdevice's past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Jul 20, 2026
  • mmcore Public

    Experimental mirror; 'main' may be reset

    micro-manager/mmcore's past year of commit activity
    C++ 0 1 0 0 Updated Jul 20, 2026
  • MM-OME-Zarr-Storage Public

    A high-performance Java library for streaming multi-dimensional microscopy images to **OME-Zarr** (OME-NGFF **v0.5** on **Zarr v3**), with a multiscale pyramid and concurrent read-while-write.

    micro-manager/MM-OME-Zarr-Storage's past year of commit activity
    Java 4 BSD-3-Clause 1 0 0 Updated Jul 19, 2026
  • MM-OME-BigTiff-Storage Public

    A high-performance Java library for streaming multi-dimensional microscopy images to **pyramidal OME-BigTIFF**, with a multiscale (SubIFD) pyramid and concurrent read-while-write.

    micro-manager/MM-OME-BigTiff-Storage's past year of commit activity
    Java 0 BSD-3-Clause 1 0 0 Updated Jul 19, 2026

Most used topics

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