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  1. harmony harmony Public

    Fast, sensitive and accurate integration of single-cell data with Harmony

    R 670 110

  2. presto presto Public

    Fast Wilcoxon and auROC

    R 216 46

  3. symphony symphony Public

    Efficient and precise single-cell reference atlas mapping with Symphony

    Jupyter Notebook 126 23

  4. starCAT starCAT Public

    Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs

    Jupyter Notebook 109 5

  5. SCENT SCENT Public

    Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA

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  6. LISI LISI Public

    Methods to compute Local Inverse Simpson's Index (LISI)

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Repositories

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  • nucleusNodeStatus Public

    Node Status for Eris Nucleus

    immunogenomics/nucleusNodeStatus's past year of commit activity
    HTML 0 0 0 0 Updated Sep 9, 2026
  • erisNodeStatus Public

    Tracker for ERIS cluster system

    immunogenomics/erisNodeStatus's past year of commit activity
    HTML 0 0 0 0 Updated Sep 9, 2026
  • presto Public

    Fast Wilcoxon and auROC

    immunogenomics/presto's past year of commit activity
    R 216 46 15 2 Updated Sep 8, 2026
  • Dynema.jl Public
    immunogenomics/Dynema.jl's past year of commit activity
    Julia 4 MIT 0 0 1 Updated Sep 8, 2026
  • Dynema_datasets Public

    Simulated datasets to demonstrate Dynema's application to map single-cell eQTLs

    immunogenomics/Dynema_datasets's past year of commit activity
    0 MIT 0 0 0 Updated Sep 5, 2026
  • Dynema_analysis Public

    Contains scripts using Dynema to map single-cell eQTL in T cells from TBRU and OneK1K datasets

    immunogenomics/Dynema_analysis's past year of commit activity
    Julia 2 MIT 0 0 0 Updated Aug 24, 2026
  • AMP_SLE_Kidney Public

    Scripts for AMP_SLE_Kidney

    immunogenomics/AMP_SLE_Kidney's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 12, 2026
  • amp-aim-synovium Public

    Pipeline for processing AMP-AIM synovium data

    immunogenomics/amp-aim-synovium's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 21, 2026
  • starCAT Public

    Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs

    immunogenomics/starCAT's past year of commit activity
    Jupyter Notebook 109 MIT 5 6 2 Updated Jul 13, 2026
  • harmony Public

    Fast, sensitive and accurate integration of single-cell data with Harmony

    immunogenomics/harmony's past year of commit activity
    R 670 110 83 4 Updated Jun 5, 2026

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