Comparative genomics of Pseudomonas syringae on cherry and plum

Repository for the commands used in comparative analysis including genome assembly, orthomcl, phylogenetics, BayesTraits, geneconv, Ranger-DTL, effector identification

Name		Name	Last commit message	Last commit date
GI		GI
R		R
annotation		annotation
assembly		assembly
bayestraits		bayestraits
data		data
direct_structure		direct_structure
effectors		effectors
install_progs		install_progs
minion		minion
miscellaneous_scripts		miscellaneous_scripts
orthomcl		orthomcl
pangenomics		pangenomics
phylogenetics		phylogenetics
ranger-dtl		ranger-dtl
README.md		README.md
circlator instructions		circlator instructions
circos_pipeline		circos_pipeline
extract_seq.sh		extract_seq.sh
mauve_alignments		mauve_alignments
read_coverage_commands		read_coverage_commands
sub_alien.sh		sub_alien.sh
sub_checkm.sh		sub_checkm.sh
sub_geneconv.sh		sub_geneconv.sh
sub_realphy.sh		sub_realphy.sh

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