Computational regenerative medicine and geroscience tooling. The repositories are research artifacts. They are not clinical advice, dosing guidance, or a biological-age clock.
Student at Florida Atlantic University (MS, Artificial Intelligence). Experimental projects, often built with AI-assisted coding. Hobby use first; no lab-collaboration pitch.
- regen-workbench — local Docker lab and MCP sidecar
- geroscience-compound-atlas — public compounds, graded evidence, scaffold-split bake-off, play vs hypothesis generation — live atlas
| Piece | Role |
|---|---|
| cell-protocol-compiler | Machine-readable checklists for published hiPSC workflows |
| brightfield-colony-qc | Morphology QC. A flag is triage, not a diagnosis |
| diffmedia-loop | In-vitro media search on a synthetic surface |
| regen-benchmark-kit | Group-aware baselines and input hashes |
| senescence-module-score | SenMayo control-gene score |
| organoid-oxygen-lab | Conservative spherical oxygen transport |
| cell-fate-transport | Balanced optimal transport for cell-state snapshots |
| perfusion-calibration-lab | Offline gravimetric flow checks |
| open-perfusion-rig | Host-side simulation of a research perfusion rig |
| anagen | Hair/tooth research map — live |
In the atlas: make generate is play mode. make hypothesis applies hard property gates and an anti-clone Tanimoto cap, then writes cards under hypotheses/. Cards are not a stack.
geroscience-compound-atlas— runmake hypothesislocally and inspect reject counts.organoid-oxygen-lab— keep units honest; do not fit fake biology.regen-benchmark-kit+brightfield-colony-qc— do not invent a new imaging cohort.diffmedia-loop+cell-protocol-compiler— planner stays inside encoded windows.cell-fate-transport— stay balanced unless a growth model is implemented on purpose.open-perfusion-rig+perfusion-calibration-lab— analysis only; no medical infusion claims.regen-workbench— host.envand MCP; never paste keys into chat.
Out of this queue unless named: AI_Companion, ReaperDelay, AvoidGrimReaper, diaper-changing-machines, Story.
