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aafshinfard/README.md

Hi there 👋

Passionate about the intersection of Computer Science and Biology, I leverage Algorithms and Machine Learning techniques to research and craft innovative tools for sequence (NGS or long-read) data analysis. My research is primarily centered around problems like de novo genome assembly, scaffolding, read alignment, structural variant detection, to name a few.

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  1. BirolLab/physlr BirolLab/physlr Public

    ⛓️ Construct a Physical Map from Linked Reads

    Python 20 7

  2. BirolLab/abyss BirolLab/abyss Public

    🔬 Assemble large genomes using short reads

    C++ 333 113

  3. JustinChu/JupiterPlot JustinChu/JupiterPlot Public

    A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.

    Perl 98 11

  4. github_workshop github_workshop Public

    Github Workshop

    1 12

  5. ExSV ExSV Public

    Qu-SV: Quick Detection of Complex Structural Variants in Haploid, Diploid and Cancer Genomes.

    C++ 2

  6. physlr2 physlr2 Public

    Physical maps of long reads or linked reads

    Rust 2