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Add rMATS-long v2.1.0 image - #19

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byee4 wants to merge 2 commits into
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rmats-long-v2.1.0
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byee4 wants to merge 2 commits into
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rmats-long-v2.1.0

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@byee4

@byee4 byee4 commented Sep 17, 2026

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Summary

  • Adds images/rmats-long/v2.1.0/Dockerfile for rMATS-long v2.1.0.
  • Follows the upstream Dockerfile (debian:trixie + ./install), with two changes: it pins the release tag and uses Miniforge (conda-forge only), so no channel ToS prompt is needed during a non-interactive build.
  • Adds a CHANGELOG entry.

Verification

  • The publish workflow succeeded on the branch push (run 35223619846) and published ghcr.io/yeolab/rmats-long:v2.1.0 (sha256:742ab34ce8d727c9465a1b6789f88195dbaf57b1424d1b09d5cf9375cd428b6c).
  • Pulled with Singularity on TSCC. rmats-long rmats_long.py --help, snakemake 8.0.1 and samtools 1.22.1 all run.
  • A dry run of the upstream Snakefile inside the SIF resolves the full workflow (29 jobs).

🤖 Generated with Claude Code

byee4 and others added 2 commits September 17, 2026 05:52
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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