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Follow-up to #29.
The merged PR made the Reference root configurable, but the in-process bootstrap could still retain candidate repository paths in sys.path and leave newly imported frontier.* modules in sys.modules. Because frontier is a namespace package, this allowed mixed candidate/Reference provenance in in-process use.
This change temporarily removes candidate repository paths during Reference execution and cleans only frontier.* modules loaded by this invocation. Added regression tests cover both behaviors.
Validation:
Reference: follow-up to merged PR #29.