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@NIB-SI

National Institute of Biology

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  1. pISA-tree pISA-tree Public

    pISA-tree: Standard project directory tree ( ISA framework compliant )

    Batchfile 7 3

  2. BoolDog BoolDog Public

    A Python package for analyses of Boolean and semi-quantitative Boolean networks.

    Jupyter Notebook

  3. skm-tools skm-tools Public

    Scripts and utilities for leveraging SKM resources

    Jupyter Notebook 3

  4. multiOmics-integration multiOmics-integration Public

    Potato ‘omics data analysis pipelines

    HTML 4 3

  5. Bacillus-Pti5 Bacillus-Pti5 Public

    understanding endophyte/plant relationships

    HTML

  6. Adapt_field_ML Adapt_field_ML Public

    Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season

    Jupyter Notebook

Repositories

Showing 10 of 55 repositories
  • cdr_FS Public
    NIB-SI/cdr_FS's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 3, 2026
  • ECCB2026_T12 Public

    Resources for plant sciences: data integration and interpretation tools

    NIB-SI/ECCB2026_T12's past year of commit activity
    HTML 0 MIT 2 0 0 Updated Sep 3, 2026
  • HCS-proc Public

    Data processing pipeline for High-Content Screening using CellProfiler data.

    NIB-SI/HCS-proc's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 24, 2026
  • miR160-HR Public

    miR160 in potato hypersensitive response to potato virus Y

    NIB-SI/miR160-HR's past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 18, 2026
  • BoolDog Public

    A Python package for analyses of Boolean and semi-quantitative Boolean networks.

    NIB-SI/BoolDog's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 6 0 Updated Aug 10, 2026
  • skm-tools Public

    Scripts and utilities for leveraging SKM resources

    NIB-SI/skm-tools's past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 2 Updated Jul 27, 2026
  • polyase Public

    A package for analyzing allele-specific expression in polyploid organisms

    NIB-SI/polyase's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 8, 2026
  • longrnaseq Public

    Long-read RNA-seq nextflow pipeline for quantification, novel isoform discovery and quality control

    NIB-SI/longrnaseq's past year of commit activity
    HTML 5 MIT 0 1 0 Updated Jul 6, 2026
  • skm-translate Public

    Translation pipeline from SKM to crop and crop wild relatives

    NIB-SI/skm-translate's past year of commit activity
    HTML 0 MIT 1 0 0 Updated Jun 22, 2026
  • skm-pss-export Public

    Export adapters from PSS neo4j db to other formats

    NIB-SI/skm-pss-export's past year of commit activity
    Python 0 MIT 0 7 0 Updated Jun 1, 2026
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