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@MGXlab

VEO & MGX Groups

Viral Ecology and Omics Group (VEO) & Metagenomics Group (MGX)

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  1. CAT_pack CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    Python 236 35

  2. DNNGIOR DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    Python 19 4

  3. genes_synteny genes_synteny Public

    This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.

    Jupyter Notebook 10

  4. Jaeger Jaeger Public

    Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

    Python 10 1

  5. Viromics-Workshop-MGX Viromics-Workshop-MGX Public

    Python 9 3

  6. social_niche_breadth_SNB social_niche_breadth_SNB Public

    Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.

    Python 9 1

Repositories

Showing 10 of 31 repositories
  • CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    MGXlab/CAT_pack's past year of commit activity
    Python 236 MIT 35 58 5 Updated Sep 21, 2026
  • phagetransformer Public

    Deep-learning model for host prediction of bacteriophages

    MGXlab/phagetransformer's past year of commit activity
    Python 4 0 0 0 Updated Sep 21, 2026
  • MetagenomicAnalysisSinkhole Public

    Code used for analysis and visualization of metagenomic data for "A specialized microbiome enriched in nitrification and halogen cycling potential resolved from multi-omics investigation of a Caribbean suboxic and acidic marine sinkhole".

    MGXlab/MetagenomicAnalysisSinkhole's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 10, 2026
  • Viromics2026 Public

    Course website for the Viromics - Bioinformatics module 2026

    MGXlab/Viromics2026's past year of commit activity
    HTML 1 0 0 0 Updated Sep 8, 2026
  • Jaeger Public

    Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

    MGXlab/Jaeger's past year of commit activity
    Python 10 MIT 1 1 0 Updated Sep 4, 2026
  • abiotic_environment Public

    This repository contains code and data relative to paper "High throughput genomic feature extraction reveals prokaryotic adaptations to the abiotic environment".

    MGXlab/abiotic_environment's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jun 19, 2026
  • DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    MGXlab/DNNGIOR's past year of commit activity
    Python 19 MIT 4 9 1 Updated May 26, 2026
  • FxTractor Public

    FxTractor is a high-throughput snakemake pipeline to extract features from prokaryotic genomes.

    MGXlab/FxTractor's past year of commit activity
    Python 3 GPL-3.0 2 0 0 Updated Mar 13, 2026
  • MetabSpace Public

    Metabolomics analysis with LC-HRMS

    MGXlab/MetabSpace's past year of commit activity
    R 4 MIT 1 0 0 Updated Jan 16, 2026
  • genes_synteny Public

    This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.

    MGXlab/genes_synteny's past year of commit activity
    Jupyter Notebook 10 GPL-3.0 0 0 0 Updated Jan 2, 2026
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