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@KellisLab

MIT CompBio Group

Manolis Kellis Lab at MIT and Broad Institute

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  1. scdemon scdemon Public

    single-cell decorrelated module networks

    Python 34 2

  2. AD_regulome_analysis AD_regulome_analysis Public

    AD regulome analysis

    R 16 3

  3. Phenoverse Phenoverse Public

    Deep interpretable learning of sample representations for characterizing disease states in single-cell transcriptomics

    Python 10

  4. Mantis_SDK Mantis_SDK Public

    Python 6 1

  5. benj benj Public

    benj benj benj

    Python 5 1

  6. banksy-hd banksy-hd Public

    BANKSY for high dimensional spatial transcriptomics (like Visium HD)

    Python 5

Repositories

Showing 10 of 32 repositories
  • scMOSAIC Public

    scMOSAIC is an R package for processing targeted PacBio long-read sequencing generated from 10x Genomics Multiome ATAC libraries and linking locus-specific DNA variation to matched single-nucleus transcriptomes.

    KellisLab/scMOSAIC's past year of commit activity
    R 1 0 0 0 Updated Sep 1, 2026
  • Mantis-Discord-Bot Public
    KellisLab/Mantis-Discord-Bot's past year of commit activity
    Python 0 0 1 0 Updated Aug 31, 2026
  • evolutionDeepLearning Public

    Analysis scripts associated with "Deep learning predicts cis-regulatory turnover in human evolution". Mangan et al, BioRxiv 2025.

    KellisLab/evolutionDeepLearning's past year of commit activity
    R 1 BSD-3-Clause 0 0 0 Updated Aug 21, 2026
  • actionet-python Public
    KellisLab/actionet-python's past year of commit activity
    Jupyter Notebook 1 MIT 0 1 0 Updated Aug 21, 2026
  • auto-meeting-minutes Public
    KellisLab/auto-meeting-minutes's past year of commit activity
    Python 0 2 1 5 Updated Aug 18, 2026
  • libactionet Public
    KellisLab/libactionet's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Aug 16, 2026
  • Mantis_SDK Public
    KellisLab/Mantis_SDK's past year of commit activity
    Python 6 1 2 5 Updated Aug 7, 2026
  • actionet-r Public
    KellisLab/actionet-r's past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 1, 2026
  • benj Public

    benj benj benj

    KellisLab/benj's past year of commit activity
    Python 5 GPL-3.0 1 0 0 Updated Jul 27, 2026
  • Phenoverse Public

    Deep interpretable learning of sample representations for characterizing disease states in single-cell transcriptomics

    KellisLab/Phenoverse's past year of commit activity
    Python 10 MIT 0 0 0 Updated Jul 23, 2026
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