Infectious Disease Dynamics Group at Johns Hopkins University

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1. COVIDScenarioPipeline COVIDScenarioPipeline Public archive

   Public shared code for doing scenario forecasting and creating reports for various governmental entities.

   HTML 104 48

2. ncov_incubation ncov_incubation Public

   Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

   56 20

3. covidRTPCR covidRTPCR Public

   Analysis of RT-PCR sensitivity by day since exposure or symptom onset

   Stan 25 11

4. hit-covid hit-covid Public

   Data and Codebook for the HIT-COVID Project

   22 7

5. nCoV-Sandbox nCoV-Sandbox Public

   HTML 15 4

6. phylosamp phylosamp Public

   The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.

   R 14 3