Skip to content
@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

Pinned Loading

  1. bambu bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 258 28

  2. sg-nex-data sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    R 163 27

  3. m6anet m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 133 21

  4. xpore xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 169 24

  5. awesome-nanopore awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    330 61

  6. awesome-genomic-skills awesome-genomic-skills Public

    A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

    97 26

Repositories

Showing 10 of 19 repositories
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    GoekeLab/NanoporeRNASeq's past year of commit activity
    R 8 MIT 2 0 0 Updated Sep 4, 2026
  • bambu-pipe Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    GoekeLab/bambu-pipe's past year of commit activity
    Nextflow 24 GPL-3.0 3 4 0 Updated Sep 2, 2026
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    GoekeLab/bambu's past year of commit activity
    R 258 GPL-3.0 28 55 3 Updated Sep 2, 2026
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    GoekeLab/sg-nex-data's past year of commit activity
    R 163 27 11 0 Updated Aug 31, 2026
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    GoekeLab/xpore's past year of commit activity
    Python 169 MIT 24 32 1 Updated Aug 25, 2026
  • awesome-genomic-skills Public

    A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

    GoekeLab/awesome-genomic-skills's past year of commit activity
    97 CC0-1.0 26 0 4 Updated Aug 5, 2026
  • awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    GoekeLab/awesome-nanopore's past year of commit activity
    330 MIT 61 0 1 Updated May 20, 2026
  • xpore-minimal-nextflow-pipeline Public

    A minimal nextflow pipeline to align (fastq) reads using minimap2, align raw nanopore signal (pod5) using f5c, and perform differential modification analysis using Xpore.

    GoekeLab/xpore-minimal-nextflow-pipeline's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 6, 2026
  • rnome-minimal-nextflow-pipeline Public

    Nextflow pipeline used for aligning nanopore modBAM files using minimap2 (preserving modification tags) and summarising modifications using modkit. Used to process RNome data

    GoekeLab/rnome-minimal-nextflow-pipeline's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 26, 2026
  • proActiv Public

    Estimation of Promoter Activity from RNA-Seq data

    GoekeLab/proActiv's past year of commit activity
    R 59 16 12 0 Updated Jul 14, 2025