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Derive the respiratory-chain kcats from the data, and compare with the Xia et al. (2022) series - #15

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feat/xia2022-dataset

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Derive the respiratory-chain kcats from the data, and compare with the Xia et al. (2022) series#15
edkerk wants to merge 11 commits into
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feat/xia2022-dataset

Commits on Oct 12, 2026
- feat: run the analysis on the Xia et al. (2022) chemostat series and compare
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  92006b7
- docs: call the model quantity the respiratory limit
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  f5a5c98
Commits on Oct 13, 2026
- fix: keep the summary rows of conditions built separately
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  2163a61
- refactor: label the analysed data as this study and keep only the outputs the comparison uses
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  4a44e31
Commits on Oct 14, 2026
- feat: derive the respiratory-chain kcats from the data
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  f89b512
Commits on Oct 15, 2026
- Level complex abundances and relax caps per complex in one LP
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  f1af287
- Label the caps relaxed to reach the dilution rate in Table 1
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  058dc22
Commits on Oct 17, 2026
- Run the Xia series on eight conditions
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- Keep only the Xia outputs the comparison reads
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  1c14fce
- Lift every raised cap in the respiratory-limit analysis
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  f5cfa1b
Commits on Oct 18, 2026
- Add the Xia μ = 0.044 condition and compare CN22 with μ0.28
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  b3d1868