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edkerk merged 6 commits into from
Sep 27, 2026
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Plot the ribosomal subunit abundance and commit the results and figures #12

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2b98535
feat: plot the average ribosomal subunit abundance
edkerk Sep 25, 2026
c398b69
fix: keep the core-ribosome label inside the subunit figure
edkerk Sep 25, 2026
6980c54
docs: add the regenerated figures
edkerk Sep 25, 2026
1ea13fb
fix: draw the figures as the published ones
edkerk Sep 25, 2026
a9bfe99
docs: refresh the usage figures with the proton leak closed
edkerk Sep 25, 2026
46efdcf
docs: commit the results of a full run
edkerk Sep 26, 2026
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8 changes: 7 additions & 1 deletion README.md
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Expand Up @@ -95,7 +95,9 @@ Options change what the models are asked to account for:
python -m overflow.build_ribosome
```

Writes `models/ecModel_P_<cond>_ribosome.yml`. The protein pseudoreaction is
Writes `models/ecModel_P_<cond>_ribosome.yml`, and a density plot of the average
abundance of the candidate subunits (`results/modelGeneration/average_riboSubunit_abundance.pdf`,
the numbers in `averageRiboSubunitAbundance.tsv`) marking where the core is cut. The protein pseudoreaction is
split so that protein comes out of a `translation` reaction catalysed by the
ribosomal subunits, at 10.5 amino acids per second per ribosome. The core is
the 48 subunits whose average abundance across all conditions reaches
Expand Down Expand Up @@ -156,6 +158,10 @@ python -m overflow.run_sampling --procs 12
python -m overflow.compare
```

The tables and figures under `results/` are from a full run of this recipe. The
models it builds (`models/ecModel_P_<cond>.yml`, about 67 MB) are not committed and
rebuild in a few minutes.

Each step reads the models the previous one wrote, so `--models-dir` and
`--results-dir` keep a run self-contained.

Expand Down
51 changes: 51 additions & 0 deletions results/COMPARISON.md
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# This pipeline against the published one

Generated by `python -m overflow.compare`. GECKO 2 values are read from
`legacy_matlab/results/`, which is what the MATLAB implementation wrote.

## Exchange rates

Measured / GECKO 2 / GECKO 4, mmol/gDW/h. The residual is the relative
deviation over glucose, CO2 and oxygen together.

| condition | glucose | CO2 | oxygen | ethanol | residual G2 | residual G4 |
|---|---|---|---|---|---|---|
| CN4 | 1.115 / 1.183 / 1.205 | 3.088 / 2.964 / 3.101 | 2.928 / 2.630 / 2.730 | 0.000 / 0.000 / 0.000 | 0.125 | 0.105 |
| CN22 | 1.478 / 1.567 / 1.596 | 4.070 / 3.486 / 4.395 | 4.185 / 2.502 / 3.850 | 0.000 / 0.000 / 0.010 | 0.431 | 0.139 |
| CN38 | 2.014 / 2.135 / 2.175 | 6.303 / 4.140 / 5.799 | 5.169 / 1.831 / 4.954 | 0.790 / 0.870 / 0.747 | 0.734 | 0.120 |
| CN75 | 3.227 / 3.392 / 3.486 | 7.880 / 6.061 / 8.511 | 6.661 / 1.100 / 6.128 | 2.283 / 2.511 / 2.100 | 0.868 | 0.139 |
| hGR | 5.416 / 5.668 / 5.849 | 11.033 / 11.534 / 11.916 | 7.660 / 5.591 / 8.167 | 3.680 / 4.048 / 3.386 | 0.278 | 0.131 |

Mean residual: GECKO 2 0.487, GECKO 4 0.127.

## Median capacity usage per system (%)

| system | CN4 | CN22 | CN38 | CN75 | hGR |
|---|---|---|---|---|---|
| Amino acid metabolism | 1.7 / 1.3 | 4.6 / 2.0 | 2.1 / 3.1 | 3.2 / 5.5 | 5.6 / 7.8 |
| ETC | 100.0 / 40.6 | 96.0 / 66.2 | 100.0 / 100.0 | 70.6 / 100.0 | 99.5 / 100.0 |
| Glycolysis | 0.4 / 1.7 | 0.5 / 3.0 | 5.8 / 5.8 | 10.3 / 11.4 | 24.1 / 28.4 |
| Nitrogen metabolism | 10.3 / 0.9 | 1.7 / 7.1 | 2.3 / 0.1 | 4.8 / 0.1 | 18.0 / 0.1 |
| PP shunt | 5.6 / 11.0 | 11.7 / 0.8 | 20.5 / 0.0 | 20.6 / 0.2 | 41.7 / 1.8 |
| Ribosome | 28.8 / 26.3 | 33.9 / 29.0 | 33.7 / 47.3 | 33.6 / 57.3 | 66.4 / 74.0 |
| TCA cycle | 2.1 / 3.7 | 2.1 / 7.3 | 2.2 / 3.9 | 0.0 / 6.4 | 9.2 / 0.1 |
| THF cycle | 11.9 / 4.0 | 1.6 / 6.0 | 9.2 / 18.7 | 0.3 / 16.9 | 5.9 / 18.0 |

## Sampled ATP and redox budget

mmol/gDW/h, GECKO 2 / GECKO 4.

| | CN4 | CN22 | CN38 | CN75 | hGR |
|---|---|---|---|---|---|
| rGlu | 1.17 / 1.17 | 1.55 / 1.54 | 2.11 / 2.11 | 3.39 / 3.37 | 5.68 / 5.66 |
| ETC_rATP | 8.34 / 8.18 | 12.4 / 12.2 | 15.3 / 14.6 | 19.3 / 19 | 22.5 / 22 |
| glycolysis_rATP | 1.42 / 1.22 | 2.19 / 1.94 | 2.79 / 2.3 | 5.09 / 4.53 | 8.41 / 7.64 |
| GAEC_rATP | 5.61 / 5.53 | 5.74 / 5.66 | 5.17 / 5.14 | 5.03 / 5 | 15.6 / 15.4 |
| NGAM_rATP | 1.55 / 0.819 | 5.92 / 4.49 | 10.7 / 8.57 | 16.8 / 14.7 | 8.09 / 4.82 |
| GAEC+NGAM+Metabolism_rATP | 9.76 / 9.41 | 14.6 / 14.1 | 18.1 / 16.9 | 24.4 / 23.5 | 30.9 / 29.6 |
| rPDH | 0.983 / 1.05 | 1.4 / 1.58 | 1.65 / 1.77 | 2.17 / 2.6 | 2.4 / 3.73 |
| rIDH | 0.754 / 0.795 | 1.16 / 1.11 | 1.54 / 1.4 | 1.73 / 1.56 | 1.8 / 1.07 |
| rMDHc | -0.0971 / 0.0355 | -0.113 / -0.0394 | -1.86 / 0.0224 | -1.44 / 0.0313 | -1.03 / 0.122 |
| rMDHm | 0.856 / 0.632 | 1.28 / 1.21 | 3.33 / 1.24 | 3.45 / 1.85 | 2.83 / 1.98 |
| rNDE | 1.68 / 1.8 | 2.48 / 2.59 | 3.57 / 3.05 | 4.69 / 4.34 | 6.64 / 5.89 |

217 changes: 217 additions & 0 deletions results/enzymeUsage/capUsage.tsv
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protID geneID protName CN4 CN22 CN38 CN75 hGR GOterm
P00401 Q0045 COX1 40.644 66.173 100.0 100.0 100.0 ETC
P00163 Q0105 COB 58.216 93.386 100.0 100.0 100.0 ETC
P00410 Q0250 COX2 40.644 66.173 100.0 100.0 100.0 ETC
P00420 Q0275 COX3 40.644 66.173 100.0 100.0 100.0 ETC
P31373 YAL012W CYS3 3.146 4.126 6.236 6.375 12.635 Amino acid metabolism
P00549 YAL038W CDC19 3.016 3.072 4.835 9.763 30.059 Glycolysis
P39726 YAL044C GCV3 4.033 4.05 22.387 22.621 17.971 THF cycle
P07256 YBL045C COR1 58.216 93.386 100.0 100.0 100.0 ETC
P07702 YBR115C LYS2 11.276 12.421 17.122 23.85 34.365 Amino acid metabolism
P20049 YBR166C TYR1 41.984 80.436 100.0 100.0 99.01 Amino acid metabolism
P12709 YBR196C PGI1 0.896 1.467 3.291 6.648 8.708 Glycolysis
P32473 YBR221C PDB1 39.552 4.138 9.677 14.488 28.361 Glycolysis
P33734 YBR248C HIS7 11.653 12.9 22.139 23.828 44.428 Amino acid metabolism
P32449 YBR249C ARO4 0.736 1.297 2.982 5.632 3.109 Amino acid metabolism
P04173 YCL018W LEU2 0.364 0.439 0.637 5.618 1.548 Amino acid metabolism
P00815 YCL030C HIS4 8.88 9.967 11.999 12.777 19.721 Amino acid metabolism
P25379 YCL064C CHA1 0.0 0.0 0.0 0.0 0.0 Amino acid metabolism
P08679 YCR005C CIT2 0.0 0.0 100.0 0.0 0.0 TCA cycle
P25613 YCR010C ADY2 0.0 2.485 0.018 0.036 0.055 Nitrogen metabolism
P00560 YCR012W PGK1 0.405 0.516 1.331 2.727 4.941 Glycolysis
P16120 YCR053W THR4 0.023 0.021 0.04 0.046 0.084 Amino acid metabolism
P21954 YDL066W IDP1 14.417 0.0 0.0 0.0 0.0 TCA cycle
P07255 YDL067C COX9 40.644 66.173 100.0 100.0 100.0 ETC
P32419 YDL078C MDH3 0.0 0.0 0.001 0.001 0.0 TCA cycle
P48570 YDL182W LYS20 16.022 25.478 40.801 43.362 38.843 Amino acid metabolism
P00912 YDR007W TRP1 0.0 0.0 0.0 0.0 0.0 Amino acid metabolism
P48015 YDR019C GCV1 8.118 5.001 32.787 30.145 34.818 THF cycle
P00942 YDR050C TPI1 0.021 0.03 0.064 0.127 0.235 Glycolysis
P08566 YDR127W ARO1 14.186 27.792 46.832 100.0 50.495 Amino acid metabolism
P19262 YDR148C KGD2 8.327 17.031 41.59 53.475 39.614 TCA cycle
P13663 YDR158W HOM2 99.01 99.01 100.0 99.01 99.01 Amino acid metabolism
P37298 YDR178W SDH4 0.0 0.0 0.0 51.541 0.0 ETC
P49367 YDR234W LYS4 89.664 100.0 100.0 100.0 100.0 Amino acid metabolism
P32264 YDR300C PRO1 100.0 100.0 100.0 100.0 100.0 Amino acid metabolism
P07285 YDR354W TRP4 43.615 100.0 100.0 100.0 100.0 Amino acid metabolism
Q12359 YDR384C ATO3 0.037 0.039 0.055 0.07 0.108 Nitrogen metabolism
Q04409 YDR516C EMI2 19.855 55.462 100.0 100.0 100.0 Glycolysis
P00128 YDR529C QCR7 58.216 93.386 100.0 100.0 100.0 ETC
P08067 YEL024W RIP1 58.216 93.386 100.0 100.0 100.0 ETC
P32626 YEL038W UTR4 0.0 0.0 0.0 0.0 0.0 Amino acid metabolism
P32263 YER023W PRO3 0.172 0.118 0.041 0.045 0.153 Amino acid metabolism
P10869 YER052C HOM3 1.199 1.764 3.507 3.854 3.003 Amino acid metabolism
P00498 YER055C HIS1 3.824 2.26 4.574 4.652 11.452 Amino acid metabolism
P28240 YER065C ICL1 0.0 0.0 0.0 100.0 0.0 TCA cycle
Q01217 YER069W ARG5,6 24.521 21.182 45.264 53.426 100.0 Amino acid metabolism
P00899 YER090W TRP2 0.457 0.498 0.914 1.035 1.538 Amino acid metabolism
P05694 YER091C MET6 11.9 15.395 18.814 22.528 16.42 Amino acid metabolism
P16387 YER178W PDA1 74.733 8.113 19.053 27.667 55.739 Glycolysis
P09624 YFL018C LPD1 44.564 19.835 58.939 65.684 50.059 THF cycle
P38635 YFR025C HIS2 0.0 0.0 0.262 0.0 0.94 Amino acid metabolism
P39692 YFR030W MET10 1.229 1.042 1.582 1.852 2.262 Amino acid metabolism
P00127 YFR033C QCR6 58.216 93.386 100.0 100.0 100.0 ETC
P19955 YFR049W YMR31 30.315 56.769 100.0 100.0 93.476 Ribosome
P04806 YFR053C HXK1 0.0 0.0 12.744 54.66 17.883 Glycolysis
P07264 YGL009C LEU1 7.405 8.384 12.402 100.0 23.216 Amino acid metabolism
P00931 YGL026C TRP5 0.342 0.505 0.526 0.604 1.019 Amino acid metabolism
P53128 YGL125W MET13 2.577 2.077 2.721 2.966 4.395 THF cycle
P28777 YGL148W ARO2 5.466 10.118 16.045 28.68 15.242 Amino acid metabolism
P50113 YGL154C LYS5 0.001 0.001 0.001 0.001 0.002 Amino acid metabolism
P04037 YGL187C COX4 33.069 0.0 11.401 71.542 64.127 ETC
P32799 YGL191W COX13 33.069 0.0 11.401 71.542 64.127 ETC
P53090 YGL202W ARO8 10.216 7.653 12.45 12.041 30.691 Amino acid metabolism
P32582 YGR155W CYS4 0.452 0.374 0.385 0.403 1.635 Amino acid metabolism
P22289 YGR183C QCR9 58.216 93.386 100.0 100.0 100.0 ETC
P07245 YGR204W ADE3 3.866 31.158 100.0 100.0 10.963 THF cycle
P42941 YGR208W SER2 1.941 2.666 12.962 18.334 7.878 Amino acid metabolism
P16861 YGR240C PFK1 5.845 9.754 19.408 38.344 40.116 Glycolysis
P53312 YGR244C LSC2 13.02 16.224 0.0 0.0 0.0 TCA cycle
P53315 YGR248W SOL4 100.0 0.0 0.0 0.0 0.011 PP shunt
P00924 YGR254W ENO1 1.475 2.991 5.77 10.912 42.825 Glycolysis
P51601 YGR267C FOL2 5.957 5.952 9.37 8.774 22.953 THF cycle
P37299 YHR001W-A QCR10 58.216 93.386 100.0 100.0 100.0 ETC
P04076 YHR018C ARG4 0.042 0.02 0.027 0.031 0.121 Amino acid metabolism
P17423 YHR025W THR1 9.342 8.151 18.572 19.393 28.029 Amino acid metabolism
P07275 YHR037W PUT2 100.0 100.0 0.0 0.0 0.0 Nitrogen metabolism
P00427 YHR051W COX6 33.069 0.0 11.401 71.542 64.127 ETC
P38840 YHR137W ARO9 3.636 8.11 0.0 0.0 0.001 Amino acid metabolism
P38858 YHR163W SOL3 100.0 14.584 0.0 0.0 100.0 PP shunt
P38720 YHR183W GND1 8.11 0.537 0.0 0.0 5.315 PP shunt
P38891 YHR208W BAT1 0.098 0.115 0.181 1.636 0.691 Amino acid metabolism
P40545 YIL020C HIS6 15.874 14.555 22.322 24.213 70.569 Amino acid metabolism
P40510 YIL074C SER33 0.16 0.277 1.06 1.714 0.485 Amino acid metabolism
P40495 YIL094C LYS12 4.401 6.765 11.92 13.243 17.844 Amino acid metabolism
P07172 YIL116W HIS5 0.025 0.02 0.029 0.03 0.117 Amino acid metabolism
P20967 YIL125W KGD1 17.403 42.364 100.0 100.0 46.829 TCA cycle
P38998 YIR034C LYS1 0.002 0.002 0.002 0.002 0.006 Amino acid metabolism
P47052 YJL045W YJL045W 23.547 50.183 86.591 100.0 55.055 ETC
P00360 YJL052W TDH1 15.681 24.749 100.0 100.0 100.0 Glycolysis
P05150 YJL088W ARG3 0.013 0.011 0.015 0.019 0.045 Amino acid metabolism
P46969 YJL121C RPE1 13.89 2.624 5.711 7.088 1.711 PP shunt
P07259 YJL130C URA2 0.125 0.108 0.162 0.291 0.38 Amino acid metabolism
P08525 YJL166W QCR8 58.216 93.386 100.0 100.0 100.0 ETC
P39533 YJL200C ACO2 0.0 38.369 100.0 100.0 100.0 TCA cycle
P00358 YJR009C TDH2 0.0 0.0 0.016 0.24 0.5 Glycolysis
P08536 YJR010W MET3 0.825 1.094 1.478 1.718 2.78 Amino acid metabolism
P39522 YJR016C ILV3 6.474 11.101 13.061 32.08 22.13 Amino acid metabolism
P47095 YJR024C MDE1 0.312 30.708 34.076 34.637 70.436 Amino acid metabolism
P47169 YJR137C MET5 0.84 0.682 1.074 1.274 1.593 Amino acid metabolism
P31116 YJR139C HOM6 1.96 1.689 2.421 2.681 7.708 Amino acid metabolism
P47176 YJR148W BAT2 0.873 0.398 1.244 6.47 19.483 Amino acid metabolism
Q02196 YKL001C MET14 5.017 8.299 11.776 11.436 19.032 Amino acid metabolism
P14540 YKL060C FBA1 1.685 2.066 5.697 11.404 17.645 Glycolysis
P17505 YKL085W MDH1 7.133 13.07 25.767 43.043 22.409 TCA cycle
P33421 YKL141W SDH3 23.547 50.183 86.591 100.0 55.055 ETC
Q00711 YKL148C SDH1 0.0 0.0 0.0 51.541 0.0 ETC
P00950 YKL152C GPM1 0.603 0.649 1.53 3.404 8.641 Glycolysis
P00937 YKL211C TRP3 6.372 9.884 11.348 13.076 25.062 Amino acid metabolism
Q02046 YKR080W MTD1 92.9 100.0 100.0 100.0 100.0 THF cycle
P21801 YLL041C SDH2 23.547 50.183 86.591 100.0 55.055 ETC
Q07938 YLR017W MEU1 0.938 100.0 100.0 100.0 100.0 Nitrogen metabolism
P23542 YLR027C AAT2 0.4 0.521 0.624 0.74 1.489 Amino acid metabolism
Q01519 YLR038C COX12 33.069 0.0 11.401 71.542 64.127 ETC
P37291 YLR058C SHM2 0.067 0.138 0.828 1.212 0.185 THF cycle
P09368 YLR142W PUT1 0.003 100.0 0.0 0.0 0.0 Nitrogen metabolism
Q06236 YLR164W SHH4 23.547 50.183 86.591 100.0 55.055 ETC
P41939 YLR174W IDP2 5.142 18.054 100.0 100.0 76.347 TCA cycle
P06106 YLR303W MET17 0.02 0.031 0.044 0.049 0.084 Amino acid metabolism
P19414 YLR304C ACO1 16.454 19.089 25.664 44.226 33.688 TCA cycle
P15019 YLR354C TAL1 1.455 0.107 0.065 0.406 1.35 PP shunt
P06168 YLR355C ILV5 1.377 2.157 3.925 15.122 6.752 Amino acid metabolism
P04039 YLR395C COX8 33.069 0.0 11.401 71.542 64.127 ETC
P07991 YLR438W CAR2 0.0 0.0 8.632 10.387 56.974 Amino acid metabolism
Q03677 YMR009W ADI1 0.0 0.059 0.064 0.068 0.063 Amino acid metabolism
Q04728 YMR062C ARG7 8.641 8.621 26.817 30.527 79.183 Amino acid metabolism
P07342 YMR108W ILV2 0.654 0.883 1.308 5.302 2.172 Amino acid metabolism
Q12676 YMR113W FOL3 0.0 0.0 0.14 0.166 0.0 THF cycle
P54114 YMR169C ALD3 0.005 0.425 0.0 0.0 0.0 Amino acid metabolism
P49095 YMR189W GCV2 24.398 16.165 100.0 100.0 77.885 THF cycle
P16862 YMR205C PFK2 4.307 6.706 13.518 25.015 29.475 Glycolysis
P10174 YMR256C COX7 33.069 0.0 11.401 71.542 64.127 ETC
Q03266 YMR289W ABZ2 0.0 0.0 1.271 1.639 0.0 THF cycle
P53982 YNL009W IDP3 0.0 0.011 0.0 0.0 0.0 TCA cycle
P00424 YNL052W COX5A 33.069 0.0 11.401 71.542 64.127 ETC
P06208 YNL104C LEU4 0.005 0.005 0.004 0.0 0.011 Amino acid metabolism
P30952 YNL117W MLS1 0.0 0.0 0.0 0.002 0.0 TCA cycle
P11412 YNL241C ZWF1 1.14 0.072 0.0 0.0 0.782 PP shunt
P53848 YNL256W FOL1 0.0 8.782 18.668 0.0 40.128 THF cycle
P08465 YNL277W MET2 15.112 17.52 24.193 31.116 50.673 Amino acid metabolism
P32452 YNL316C PHA2 1.362 1.883 2.378 3.508 8.011 Amino acid metabolism
P00890 YNR001C CIT1 5.597 11.535 27.188 41.279 13.534 TCA cycle
P37254 YNR033W ABZ1 81.805 86.542 99.01 99.01 0.003 THF cycle
P38999 YNR050C LYS9 0.547 0.663 1.302 1.378 1.927 Amino acid metabolism
P22768 YOL058W ARG1 31.499 20.675 20.373 25.001 99.01 Amino acid metabolism
P32179 YOL064C MET22 11.321 9.717 30.703 35.564 37.936 Amino acid metabolism
P22133 YOL126C MDH2 0.003 0.006 0.021 0.076 0.096 TCA cycle
P18544 YOL140W ARG8 50.038 65.748 100.0 100.0 100.0 Amino acid metabolism
P07143 YOR065W CYT1 58.216 93.386 100.0 100.0 100.0 ETC
P06785 YOR074C CDC21 0.196 0.188 0.303 0.281 0.709 THF cycle
Q12189 YOR095C RKI1 100.0 100.0 100.0 100.0 100.0 PP shunt
Q12166 YOR108W LEU9 0.0 0.0 0.001 0.032 100.0 Amino acid metabolism
Q12375 YOR130C ORT1 0.003 0.003 0.004 0.004 0.012 Amino acid metabolism
P53598 YOR142W LSC1 7.609 10.335 0.0 0.0 0.0 TCA cycle
P33330 YOR184W SER1 100.0 100.0 100.0 100.0 100.0 Amino acid metabolism
P06633 YOR202W HIS3 0.101 0.112 0.191 0.183 0.457 Amino acid metabolism
P07807 YOR236W DFR1 0.0 0.0 0.0 0.0 0.0 Amino acid metabolism
P54885 YOR323C PRO2 12.653 12.745 1.428 1.431 3.138 Amino acid metabolism
P07262 YOR375C GDH1 17.557 7.083 16.2 23.563 44.073 Nitrogen metabolism
P46151 YPL023C MET12 11.517 9.629 12.914 16.874 37.237 THF cycle
P19516 YPL132W COX11 0.0 66.173 100.0 100.0 100.0 Ribosome
P08417 YPL262W FUM1 2.176 4.265 7.802 12.664 4.865 TCA cycle
P43635 YPR001W CIT3 0.0 0.0 0.0 0.0 0.0 TCA cycle
P32288 YPR035W GLN1 1.581 0.242 0.442 1.163 3.12 Nitrogen metabolism
P32178 YPR060C ARO7 8.119 8.542 9.872 14.458 28.155 Amino acid metabolism
P23254 YPR074C TKL1 4.21 1.121 1.956 3.404 1.972 PP shunt
Q06489 YPR118W MRI1 0.025 3.146 3.266 3.243 4.755 Amino acid metabolism
P49089 YPR145W ASN1 11.508 5.376 12.497 14.31 38.819 Amino acid metabolism
P18408 YPR167C MET16 99.01 99.01 100.0 100.0 99.01 Amino acid metabolism
P07257 YPR191W QCR2 58.216 93.386 100.0 100.0 100.0 ETC
P14126 YOR063W YOR063W 15.017 19.305 29.594 32.518 43.345 Ribosome
P26783 YJR123W YJR123W 28.967 32.368 56.905 58.776 80.915 Ribosome
P05755 YBR189W YBR189W 26.818 29.625 43.55 51.823 70.409 Ribosome
P26786 YOR096W YOR096W 28.971 31.493 53.551 57.792 86.736 Ribosome
P05317 YLR340W YLR340W 24.92 25.162 38.209 45.375 72.206 Ribosome
P04147 YER165W YER165W 72.548 76.247 99.01 99.01 99.01 Ribosome
P05750 YNL178W YNL178W 46.549 53.175 82.894 92.244 99.01 Ribosome
P25443 YGL123W YGL123W 31.064 33.41 53.733 63.272 85.298 Ribosome
P48589 YOR369C YOR369C 18.978 20.649 31.83 41.204 60.573 Ribosome
Q3E7X9 YOR167C YOR167C 19.218 20.32 29.627 37.356 58.79 Ribosome
P41805 YLR075W YLR075W 22.395 23.111 42.67 45.571 63.3 Ribosome
P51401 YNL067W YNL067W 25.745 27.849 37.645 56.727 90.79 Ribosome
P26785 YNL069C YNL069C 42.668 55.624 90.589 99.01 99.01 Ribosome
Q02753 YBR191W YBR191W 15.236 17.712 26.184 33.043 49.581 Ribosome
P04449 YGL031C YGL031C 14.342 18.353 33.204 33.611 50.044 Ribosome
P38061 YBL092W YBL092W 18.61 20.95 30.712 39.477 58.613 Ribosome
P05748 YLR029C YLR029C 22.777 25.526 41.093 46.623 73.794 Ribosome
P05756 YDR064W YDR064W 44.157 48.944 77.247 90.0 99.01 Ribosome
P41056 YOR234C YOR234C 25.203 26.856 47.493 54.624 91.323 Ribosome
P41057 YLR388W YLR388W 37.099 40.47 64.515 82.313 87.412 Ribosome
P05739 YLR448W YLR448W 39.825 46.315 75.895 86.361 99.01 Ribosome
P87262 YER056C-A YER056C-A 29.461 35.208 48.058 62.599 89.372 Ribosome
P38754 YHL001W YHL001W 14.256 13.439 25.893 23.831 62.997 Ribosome
P14120 YGL030W YGL030W 29.217 34.317 59.977 70.823 87.521 Ribosome
P49167 YLR325C YLR325C 19.231 22.849 35.834 42.42 57.213 Ribosome
P41058 YDL061C YDL061C 44.348 46.569 69.24 74.088 99.01 Ribosome
P46784 YMR230W YMR230W 14.383 15.45 21.767 28.902 37.113 Ribosome
P38701 YHL015W YHL015W 24.471 25.645 45.779 48.189 69.008 Ribosome
P40212 YMR142C YMR142C 19.68 21.524 38.742 40.743 56.207 Ribosome
P02406 YGL103W YGL103W 25.864 26.802 45.997 58.014 81.444 Ribosome
P04456 YOL127W YOL127W 18.598 17.571 32.125 35.572 47.931 Ribosome
P26321 YPL131W YPL131W 39.703 43.789 67.148 80.903 99.01 Ribosome
P49166 YLR185W YLR185W 49.623 55.65 89.173 99.01 99.01 Ribosome
P05740 YKL180W YKL180W 14.262 17.886 27.032 36.654 43.051 Ribosome
P53221 YGR034W YGR034W 15.54 17.223 28.037 35.497 50.579 Ribosome
P0C2H8 YDL075W YDL075W 39.256 43.945 79.659 86.72 99.01 Ribosome
P04650 YJL189W YJL189W 23.377 26.19 38.799 47.584 58.707 Ribosome
O14455 YPL249C-A YPL249C-A 26.204 28.067 47.129 56.684 71.326 Ribosome
P39938 YGL189C YGL189C 52.868 62.728 99.01 99.01 99.01 Ribosome
P38011 YMR116C YMR116C 21.403 25.865 41.531 44.486 60.141 Ribosome
P16521 YLR249W YLR249W 45.099 41.59 53.5 58.895 71.226 Ribosome
P05749 YLR061W YLR061W 36.424 42.405 70.512 73.11 95.211 Ribosome
P23248 YML063W YML063W 27.949 30.222 53.701 58.775 73.956 Ribosome
P07281 YNL302C YNL302C 26.363 27.676 46.562 55.607 72.472 Ribosome
Q01855 YOL040C YOL040C 28.0 31.91 54.174 58.462 74.101 Ribosome
P05759 YLR167W YLR167W 44.713 47.47 59.561 83.803 99.01 Ribosome
P46654 YLR048W YLR048W 65.596 57.332 99.01 99.01 99.01 Ribosome
P17076 YHL033C YHL033C 23.789 28.369 39.888 46.09 66.449 Ribosome
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