Skip to content

Point repository, documentation and RAVEN data links to CompMetEng - #65

Merged
edkerk merged 1 commit into
developfrom
chore/compmeteng-links
Oct 17, 2026
Merged

edkerk merged 1 commit into
developfrom
chore/compmeteng-links

Conversation

@edkerk

@edkerk edkerk commented Oct 17, 2026

Copy link
Copy Markdown
Collaborator

geckopy, raven-toolbox and the GECKO 4 and RAVEN 3 development moved from SysBioChalmers to CompMetEng, and these references still pointed to the old locations.

  • geckopy.databases.phyl_dist: keggPhylDist.mat was downloaded from SysBioChalmers/RAVEN at tag 3.0.0b1. The same tag and an identical file are now in CompMetEng/RAVEN.
  • docs/migrating_from_gecko_matlab.md: the link to GECKO3_to_GECKO4.md pointed to a file that is not in the GECKO repository; the guide is published in gecko-docs.
  • README.md, pyproject.toml, docs/raven_integration.md, docs/yaml_format.md, docs/internal/raven_inventory.md and tests/test_gecko_matlab_parity.py: links to geckopy, raven-toolbox, raven-gecko-parity, GECKO and RAVEN named the previous owner.

The ghcr.io/sysbiochalmers/dlkcat-gecko image and the links to other SysBioChalmers model repositories are unchanged.

@edkerk
edkerk merged commit 53273fa into develop Oct 17, 2026
5 checks passed
@edkerk
edkerk deleted the chore/compmeteng-links branch October 17, 2026 05:32
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant