Issues

• combineCols Exponential Slowdown

  Bioconductor/SummarizedExperiment#99 · Filter by author DarioS opened on Sep 10, 2026
  3

• Adding a new assay forces dimnames on all existing assays

  Bioconductor/SummarizedExperiment#96 · Filter by author LTLA opened on Aug 4, 2026

• Adding data to row/colData

  Bioconductor/SummarizedExperiment#92 · Filter by author RiboRings opened on Jan 26, 2026
  3

• Replacing colData with a named DataFrame silently misaligns assay columns when row order differs

  Bioconductor/SummarizedExperiment#91 · Filter by author hindrek opened on Jan 9, 2026

• Subsetting SE with factor() does not work

  Bioconductor/SummarizedExperiment#89 · Filter by author TuomasBorman opened on Sep 1, 2025
  1

• SE and RangeSE (and SCE) differences in accessing rowData

  Bioconductor/SummarizedExperiment#86 · Filter by author lgatto opened on Mar 8, 2025

• longForm,SummarizedExperiment

  Bioconductor/SummarizedExperiment#85 · Filter by author lgatto opened on Jan 26, 2025
  3

• RangedSummarizedExperiment cannot be stored in a SummarizedExperiment-only slot

  Bioconductor/SummarizedExperiment#84 · Filter by author LTLA opened on Oct 31, 2024
  1

• n x p

  Bioconductor/SummarizedExperiment#82 · Filter by author ellispatrick opened on Sep 11, 2024
  1

• Coercion from SCE drops off rowData

  Bioconductor/SummarizedExperiment#81 · Filter by author TuomasBorman opened on Jul 30, 2024
  3

• Warning about dim, nrow and ncol deprecated methods.

  Bioconductor/SummarizedExperiment#74 · Filter by author charles-plessy opened on Jun 26, 2023
  2

• colData Default in Constructor Inconsistency

  Bioconductor/SummarizedExperiment#73 · Filter by author DarioS opened on May 18, 2023
  1

  

• Add an assaybind() method

  Bioconductor/SummarizedExperiment#69 · Filter by author multimeric opened on Jan 16, 2023

• package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment'

  Bioconductor/SummarizedExperiment#68 · Filter by author bakaufman opened on Jan 10, 2023
  1

• Erroneous behaviour when colData is data.frame

  Bioconductor/SummarizedExperiment#67 · Filter by author TuomasBorman opened on Nov 29, 2022

• combineCols should keep names in metadata with use.names=TRUE

  Bioconductor/SummarizedExperiment#66 · Filter by author LTLA opened on Nov 4, 2022

• Enforce unique assay names

  Bioconductor/SummarizedExperiment#60 · Filter by author hpages opened on Jan 18, 2022
  2

• Should the show() method for SummarizedExperiment objects suggest saveHDF5SummarizedExperiment()?

  enhancement
  Bioconductor/SummarizedExperiment#59 · Filter by author hpages opened on Oct 7, 2021
  1

• Add rownames check for cbind()

  Bioconductor/SummarizedExperiment#53 · Filter by author tavareshugo opened on Jul 30, 2021

• More informative error message for mismatching numbers of rows

  Bioconductor/SummarizedExperiment#46 · Filter by author LTLA opened on Oct 19, 2020

• loading package taking too much memory

  Bioconductor/SummarizedExperiment#44 · Filter by author spocks opened on Aug 27, 2020
  2

• colData assignment should fail but does not

  Bioconductor/SummarizedExperiment#36 · Filter by author vjcitn opened on Feb 14, 2020
  1

• Slightly relaxing the rowData checks for cbind

  Bioconductor/SummarizedExperiment#33 · Filter by author LTLA opened on Nov 28, 2019

• Should rowData be merged with mcols(gr)?

  question
  Bioconductor/SummarizedExperiment#30 · Filter by author LiNk-NY opened on Jul 25, 2019
  2

• derived RSE to SE coercion discards names

  Bioconductor/SummarizedExperiment#29 · Filter by author LTLA opened on Jul 23, 2019
  15