Issues

• Vignette uses hg18 TxDb

  Bioconductor/Rsamtools#67 · Filter by author vjcitn opened on Mar 31, 2026

• Unrecognized nucleotide 'B' error when sequence field in BAM file omitted

  Bioconductor/Rsamtools#64 · Filter by author ChangqingW opened on Jan 29, 2025
  1

• Samtools Stats Execution and Parsing

  Bioconductor/Rsamtools#63 · Filter by author DarioS opened on Nov 21, 2024

• FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence

  Bioconductor/Rsamtools#61 · Filter by author hpages opened on Feb 14, 2024

• Support for CSI indexes

  Bioconductor/Rsamtools#58 · Filter by author diego-rt opened on Sep 17, 2023

• CRAM support - why not?

  Bioconductor/Rsamtools#56 · Filter by author pd3 opened on Aug 22, 2023
  13

• Rsamtools with multiple threads?

  Bioconductor/Rsamtools#55 · Filter by author junjunlab opened on May 11, 2023
  2

• min_nucleotide_depth parameter of PileupParam doesn't take 0

  Bioconductor/Rsamtools#19 · Filter by author sarahwajid opened on Feb 18, 2021
  1

• Rsamtools cannot handle csi index?

  Bioconductor/Rsamtools#17 · Filter by author Mailinnia opened on Dec 1, 2020

• Bug in windows version of Rsamtools Fasta sequence retrieval

  Bioconductor/Rsamtools#14 · Filter by author dnieuw opened on Oct 16, 2019

• Rsamtools::pileup counts overlapping paired-end reads twice

  Bioconductor/Rsamtools#13 · Filter by author alkodsi opened on Oct 10, 2019
  5

• Error with getSeq from opened fasta file (Rsamtools 2.0.2)

  Bioconductor/Rsamtools#12 · Filter by author farshadf opened on Oct 4, 2019
  7

• Bug in scanTabix

  Bioconductor/Rsamtools#8 · Filter by author timoast opened on Jul 24, 2019
  4

• handle multiple calls to scanBam() on an open BamFile

  Bioconductor/Rsamtools#6 · Filter by author mtmorgan opened on Apr 5, 2019
  2

• .bai files are not found when "bam" is part of the file path

  Bioconductor/Rsamtools#4 · Filter by author ericfournier2 opened on Dec 20, 2018