Issues

• low level utilities package

  Bioconductor/Biostrings#142 · Filter by author LiNk-NY opened on Jun 10, 2026
  1

• Feature request: sassy search algorithm

  Bioconductor/Biostrings#141 · Filter by author tomsing1 opened on Jun 8, 2026

• Unexpected behaviour of identical() for DNAStringSet objects

  Bioconductor/Biostrings#140 · Filter by author csoneson opened on May 13, 2026
  2

• Single-pass file reading

  Bioconductor/Biostrings#138 · Filter by author Jelinek-J opened on Mar 26, 2026

• Improve error message for subseq when called on a vector

  Bioconductor/Biostrings#135 · Filter by author ahl27 opened on Jan 16, 2026
  

• Add data.copy argument to getSeq()

  Bioconductor/Biostrings#131 · Filter by author hpages opened on Nov 5, 2025

• Size of DNAStringSet object not compatible with nchar()

  Bioconductor/Biostrings#129 · Filter by author almeidasilvaf opened on Aug 7, 2025
  3

• Support for indels in vmatchPattern for XStringSets

  Bioconductor/Biostrings#128 · Filter by author tomsing1 opened on Aug 5, 2025

• Replace deprecated crayon with new package for coloring

  Bioconductor/Biostrings#127 · Filter by author ahl27 opened on Apr 14, 2025

• [Bug] Overflow causes weird error message in xscat

  Bioconductor/Biostrings#126 · Filter by author ahl27 opened on Apr 10, 2025

• Allow returning after only first match of pattern

  Bioconductor/Biostrings#119 · Filter by author BlueDrink9 opened on Oct 31, 2024
  3

• Error writing long reads with writeQualityScaledXStringSet

  Bioconductor/Biostrings#117 · Filter by author ahl27 opened on Oct 15, 2024
  1

• Add zstd support

  Bioconductor/Biostrings#116 · Filter by author hjarnek opened on Oct 14, 2024
  3

• Custom colors for option Biostrings.coloring

  Bioconductor/Biostrings#115 · Filter by author kmakat opened on Sep 1, 2024
  2

• Inconsistent formatting in XStringQuality objects

  Bioconductor/Biostrings#113 · Filter by author ahl27 opened on Aug 14, 2024

• Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'raw'

  Bioconductor/Biostrings#95 · Filter by author gevro opened on Mar 27, 2023
  30

• trimLRPatterns with indels not trimming as intended in case of net insertions or deletions between subject and pattern?

  Bioconductor/Biostrings#88 · Filter by author jan-glx opened on Nov 18, 2022
  2

• Encoding ASCII up to 255

  Bioconductor/Biostrings#65 · Filter by author gevro opened on Mar 24, 2022
  33

• matchPattern wildcard for AAstringset

  Bioconductor/Biostrings#34 · Filter by author swuyts opened on Jan 22, 2020
  3

• findPalindrome / palindromeLeftArm and mismatches - extends into loop

  Bioconductor/Biostrings#32 · Filter by author jayoung opened on Oct 28, 2019
  10

  

• allow gap characters in translate and codons functions?

  Bioconductor/Biostrings#30 · Filter by author jayoung opened on Oct 16, 2019
  6

  

• Misleading show() method for XStringSet objects

  Bioconductor/Biostrings#25 · Filter by author hpages opened on Jul 2, 2019
  4

  

• Consistency of seqinfo getter/setter on DNAStringSet

  Bioconductor/Biostrings#18 · Filter by author PeteHaitch opened on Nov 7, 2018
  1