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AgResearch

Bioeconomy Science Institute - Maiangi Taiao

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  1. KGD KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    R 22 17

  2. GUS-LD GUS-LD Public

    Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

    R 4 2

  3. redun_psij redun_psij Public

    PSI/J Executor for Redun

    Python 3

  4. snpGBS snpGBS Public

    A simple bioinformatics workflow to identify single nucleotide polymorphism (SNP) from Genotyping-by-Sequencing (GBS) data.

    Jupyter Notebook 2 3

  5. seffs seffs Public

    Report on the efficiency of Slurm jobs, like seff for multiple jobs

    Elvish 2 1

  6. data_prism data_prism Public

    R 1

Repositories

Showing 10 of 56 repositories
  • gbs_prism Public

    refactored GBS processing

    AgResearch/gbs_prism's past year of commit activity
    Python 0 0 12 0 Updated Sep 2, 2026
  • wgs_prism Public

    Production and q/c for wgs sequencing runs

    AgResearch/wgs_prism's past year of commit activity
    Shell 0 1 0 0 Updated Sep 2, 2026
  • smk-metabarcoding Public

    Snakemake pipeline for 16s/ITS metabarcoding which is extensible to other amplicons

    AgResearch/smk-metabarcoding's past year of commit activity
    Python 0 0 0 0 Updated Jun 23, 2026
  • build-TaFeE-DBs Public

    snakemake workflow to automate building GTDB reference database for different utilities

    AgResearch/build-TaFeE-DBs's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 22, 2026
  • TaFeE Public

    snakemake workflow for taxonomic profiling of biological sequence data

    AgResearch/TaFeE's past year of commit activity
    Python 0 MIT 0 0 0 Updated May 5, 2026
  • SMK-MAUI-seq Public Forked from jpwyoung/MAUI

    Fork of MAUI-seq for use at AgResearch

    AgResearch/SMK-MAUI-seq's past year of commit activity
    Python 0 1 0 0 Updated Feb 10, 2026
  • redun_psij Public

    PSI/J Executor for Redun

    AgResearch/redun_psij's past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Dec 12, 2025
  • redun.nix Public

    A flake package for redun

    AgResearch/redun.nix's past year of commit activity
    Nix 0 0 0 0 Updated Nov 14, 2025
  • tassel3 Public

    Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.

    AgResearch/tassel3's past year of commit activity
    Java 0 LGPL-2.1 0 1 0 Updated Nov 14, 2025
  • KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    AgResearch/KGD's past year of commit activity
    R 22 GPL-2.0 17 8 0 Updated Oct 28, 2025
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