Issues

• MS-DIAL 4.9.22118: Peak list export "deconvoluted" exports centroid data instead of true deconvoluted spectra for MSE single-sample data

  systemsomicslab/MsdialWorkbench#782 · Filter by author Lzlulu opened on Sep 1, 2026

• Inquiry regarding adduct type assignment and correction in MS-DIAL

  systemsomicslab/MsdialWorkbench#781 · Filter by author xupeng-zju opened on Aug 31, 2026

• Is it possible to map Iterative MS/MS spectra to MS1-extracted features without independent MS2 peak picking?

  systemsomicslab/MsdialWorkbench#767 · Filter by author g0079 opened on Aug 11, 2026

• ArgumentOutOfRangeException in MSDecHandler.getRefinedModelChromatograms during GC-MS quantitative data processing (v5.5.260323)

  systemsomicslab/MsdialWorkbench#740 · Filter by author Catosine opened on Jun 24, 2026
  2

• Missing (null) information in the "Post curation result" column

  systemsomicslab/MsdialWorkbench#737 · Filter by author albvaldes opened on Jun 9, 2026

• Quantmass in GC-MS workflow not taken from library

  systemsomicslab/MsdialWorkbench#735 · Filter by author toniSon opened on Jun 3, 2026
  1

• GUI crash with cross-thread ownership exception when clicking alignment spots — Bruker timsTOF Pro 2 DDA-PASEF, IBF format, v5.5.260323

  systemsomicslab/MsdialWorkbench#734 · Filter by author mecolley opened on May 28, 2026
  2

• GC-MS annotation not working in Linux Console App (v5.5) - MSP library not loaded

  systemsomicslab/MsdialWorkbench#733 · Filter by author MengdieYang opened on May 24, 2026

• MSDIAL.v5.5.260323 failed to deconvolve timsMetabo dia-PASEF data

  systemsomicslab/MsdialWorkbench#730 · Filter by author ptpb781209069 opened on May 7, 2026
  2

• Unable to export normalized GCMS data in MSDIAL v5.5.260323

  systemsomicslab/MsdialWorkbench#729 · Filter by author ajburx opened on May 6, 2026

• main windows size

  systemsomicslab/MsdialWorkbench#728 · Filter by author ondrej-kuda opened on Apr 29, 2026

• Question: should "QC at least filter" be configurable in console parameter files?

  systemsomicslab/MsdialWorkbench#727 · Filter by author actual-awg opened on Apr 27, 2026

• Issue with the exporting Alignment results in csv or txt

  systemsomicslab/MsdialWorkbench#724 · Filter by author chbalaji05 opened on Apr 24, 2026

• Export of molecular network constructed on a single feature

  systemsomicslab/MsdialWorkbench#723 · Filter by author mukhomorr opened on Apr 8, 2026

• MSDIAL.v5.5.260323 package missing msms library!

  systemsomicslab/MsdialWorkbench#722 · Filter by author imchenchang opened on Mar 27, 2026

• Processing Bruker TIMS-ToF raw data in MS-Dial needs better description in MS-Dial tutorial

  systemsomicslab/MsdialWorkbench#721 · Filter by author GerdBalcke opened on Mar 24, 2026
  6

• [System.AggregateException user-unhandled] MSDIAL - 5.5.250403-beta

  systemsomicslab/MsdialWorkbench#707 · Filter by author jjeon-qmac opened on Feb 16, 2026

• lc-ms

  systemsomicslab/MsdialWorkbench#706 · Filter by author iduoduo1002 opened on Feb 13, 2026

• Installation of MSDIAL latest version on mac os

  systemsomicslab/MsdialWorkbench#705 · Filter by author chbalaji05 opened on Feb 12, 2026

• Normalization - alignment question

  systemsomicslab/MsdialWorkbench#704 · Filter by author ssy8827-lgtm opened on Feb 9, 2026

• Which spectrum should be used identification without an internal library, and how is the “representative spectrum” generated?

  systemsomicslab/MsdialWorkbench#702 · Filter by author voledtalies opened on Feb 5, 2026

• MS-DIAL 5.5 Runtime Error (R6016) during Alignment (?)

  systemsomicslab/MsdialWorkbench#700 · Filter by author izdore opened on Feb 2, 2026
  3

• [MSDIAL-v5.6.250820-alpha] "MS1 isotopes" column of PeakID table is null for every row

  systemsomicslab/MsdialWorkbench#696 · Filter by author triston-groff opened on Jan 29, 2026

• MS-DIAL5.5.251021 - Invalid character entered - Decimal separator not accepted in Exclusion Mass List

  systemsomicslab/MsdialWorkbench#693 · Filter by author ssouzanava opened on Jan 22, 2026

• MS/MS Spectra Export as .sdf File

  systemsomicslab/MsdialWorkbench#692 · Filter by author FernandoTobias opened on Jan 19, 2026