Issues

• nucmer gives no alignment with certain records in subject file

  mummer4/mummer#238 · Filter by author peterjc opened on Mar 11, 2026
  1

• Typo in nucmer help

  mummer4/mummer#236 · Filter by author sam-grinstead opened on Jan 21, 2026

• mummer reports inexact MEMs

  mummer4/mummer#235 · Filter by author nrizzo opened on Nov 7, 2025
  2

• multiple queries

  mummer4/mummer#234 · Filter by author romseg opened on Oct 10, 2025

• Promer gives error when run

  mummer4/mummer#233 · Filter by author AlexLSalley opened on Sep 14, 2025
  1

• Information regarding about the Tandem repeats

  mummer4/mummer#232 · Filter by author jawad9-11 opened on Sep 10, 2025

• mgaps

  mummer4/mummer#231 · Filter by author ying0624 opened on Aug 4, 2025

• nucmer to identify large insertion/PAV for building linear pangenome

  mummer4/mummer#229 · Filter by author yongjiam opened on Jul 4, 2025
  1

• nucmer

  mummer4/mummer#228 · Filter by author ankeetkumar opened on Jun 23, 2025

• Interpreting negative SEQ length in show-diff

  mummer4/mummer#226 · Filter by author cedricblais opened on Mar 13, 2025

• 6 tests fail

  mummer4/mummer#224 · Filter by author yurivict opened on Feb 8, 2025
  3

• Build and test for Linux/ARM64

  mummer4/mummer#218 · Filter by author odidev opened on Nov 28, 2024

• Please consider renaming bin/annotate since it conflicts with other packages

  mummer4/mummer#217 · Filter by author yurivict opened on Oct 31, 2024

• Nucmer issue: taking forever or alignment very fragmented

  mummer4/mummer#214 · Filter by author BioJules opened on Jul 11, 2024
  4

• mummerplot chromosome is not sorted correctly

  mummer4/mummer#213 · Filter by author JeanQ2020 opened on Jun 13, 2024

• mummerplot defined(%hash) issue

  mummer4/mummer#212 · Filter by author sheraghty opened on May 28, 2024

• mummer4_Inappropriate ioctl for device

  mummer4/mummer#211 · Filter by author hjt1129 opened on May 22, 2024

• terminate called after throwing an instance of 'std::length_error

  mummer4/mummer#208 · Filter by author fka21 opened on Mar 22, 2024
  1

• delta-filter no error and no results

  mummer4/mummer#198 · Filter by author 15132522078 opened on Jun 7, 2023
  11

• dnadiff throws an error

  mummer4/mummer#197 · Filter by author MahshidF1991 opened on Apr 17, 2023

• ERROR: Could not parse delta file, shipai.filter.delta error no: 400

  mummer4/mummer#196 · Filter by author Fei5536 opened on Apr 14, 2023

• Nucmer can only call ten threads

  mummer4/mummer#195 · Filter by author gentleman-asiawang opened on Apr 13, 2023
  2

• Manually ordering contigs/chromosomes with mummerplot

  mummer4/mummer#193 · Filter by author Kendall-Lee opened on Feb 13, 2023
  2

• Failed to make on ubuntu 22.04

  mummer4/mummer#192 · Filter by author jhcuarta opened on Nov 19, 2022
  1

• nucmer won't run

  mummer4/mummer#191 · Filter by author peflanag opened on Oct 21, 2022
  2