Issues

• Config validation function checks everything

  bug
  mschecht/sc-preprocess#18 · Filter by author danielsarj opened on Feb 26, 2026

• TODOs as we head towards V1

  mschecht/sc-preprocess#17 · Filter by author mschecht opened on Feb 20, 2026
  

• show-params should point to stable release html

  mschecht/sc-preprocess#15 · Filter by author mschecht opened on Feb 3, 2026
  

• Init doublet detection tools

  enhancement
  mschecht/sc-preprocess#13 · Filter by author danielsarj opened on Jan 21, 2026

• Possible error when connecting Cell Ranger to the conda environment

  documentation
  mschecht/sc-preprocess#12 · Filter by author danielsarj opened on Jan 14, 2026

• Init demuxalot

  enhancement
  mschecht/sc-preprocess#11 · Filter by author mschecht opened on Jan 5, 2026
  2

  

• Add Cell Ranger restart capability for failed jobs

  enhancement
  mschecht/sc-preprocess#8 · Filter by author mschecht opened on Dec 3, 2025
  

• Expand workflow to cover complete 10X → Seurat/Scanpy pipeline

  enhancement
  mschecht/sc-preprocess#7 · Filter by author mschecht opened on Dec 3, 2025