Issues

• Overestimation of number of reads from nanopore data (flagstat)

  lh3/samtools#31 · Filter by author rebeelouise opened on Feb 19, 2021

• samtools index wheat bam

  lh3/samtools#30 · Filter by author liubei8852 opened on Apr 1, 2020

• No base called when reference is ambiguous

  lh3/samtools#29 · Filter by author snacktavish opened on Feb 20, 2019

• FASTA alignment index retrieval

  lh3/samtools#28 · Filter by author kullrich opened on May 4, 2018

• why we need to 'calmd' a bam file using Samtools ?

  lh3/samtools#26 · Filter by author zeronot opened on Mar 2, 2017

• NONE

  lh3/samtools#25 · Filter by author WinterLi1993 opened on Sep 10, 2016
  1

• AD, ADR and ADF counters

  lh3/samtools#24 · Filter by author iranmdl opened on Apr 22, 2016

• A question about samtools faidx

  lh3/samtools#22 · Filter by author WinterLi1993 opened on Dec 23, 2015

• Argument for -m option in bcftools view when doing multi-sample variant calling

  lh3/samtools#20 · Filter by author huiminkang opened on Jan 6, 2014

• view -s FLOAT only works for 0.5 or below

  lh3/samtools#19 · Filter by author avilella opened on Apr 24, 2013
  1

• errmod.c ln 83 typo?

  lh3/samtools#13 · Filter by author xied75 opened on Jun 7, 2012