Issues

• Python Version

  jamescasbon/PyVCF#346 · Filter by author SantosJGND opened on Mar 21, 2025
  3

• AttributeError: 'MyReader' object has no attribute 'info' for vcf file

  jamescasbon/PyVCF#341 · Filter by author anummunirmughal opened on Nov 21, 2022

• import error

  jamescasbon/PyVCF#339 · Filter by author gebdu opened on Jul 1, 2022

• FILTER line is malformed

  jamescasbon/PyVCF#337 · Filter by author myourshaw opened on Feb 14, 2022
  2

• Cannot use import vfc

  jamescasbon/PyVCF#336 · Filter by author doctorasgr opened on Feb 13, 2022
  1

• ===> PyVCF3 <<===

  jamescasbon/PyVCF#335 · Filter by author dridk opened on Jan 13, 2022
  9

• error in PyVCF setup command: use_2to3 is invalid

  jamescasbon/PyVCF#334 · Filter by author MingchenInSZ opened on Nov 4, 2021
  13

• install fails if setuptools >= 58

  jamescasbon/PyVCF#332 · Filter by author myourshaw opened on Sep 29, 2021
  1

• VCF reader.fetch

  jamescasbon/PyVCF#330 · Filter by author RNJ1993 opened on May 26, 2021

• parsing converts QUAL == zero to period, inconsistent numeric type breaks downstream filtering

  jamescasbon/PyVCF#329 · Filter by author katrinakalantar opened on May 3, 2021
  1

• Resource warning while using the library due to file not being closed in parser.py

  jamescasbon/PyVCF#328 · Filter by author Rohan-cod opened on Apr 12, 2021
  3

• vcf_filter.py python3 error with --output

  jamescasbon/PyVCF#327 · Filter by author ghost opened on Mar 15, 2021

• Pandas dataframe integration

  jamescasbon/PyVCF#324 · Filter by author hkmztrk opened on Jul 14, 2020

• Getting an OSError when trying vcf.fetch()

  jamescasbon/PyVCF#323 · Filter by author DeadlineWasYesterday opened on Jun 23, 2020

• Single threaded but uses pysam, so not single threaded

  jamescasbon/PyVCF#322 · Filter by author schultzm opened on May 18, 2020

• ValueError: could not convert string to float: 'NA'

  jamescasbon/PyVCF#318 · Filter by author dridk opened on Oct 20, 2019
  5

• VCF Filtration doesn't work with uncompressed, or UTF-8

  jamescasbon/PyVCF#317 · Filter by author OgnjenMilicevic opened on Aug 8, 2019
  1

• Cannot import PyVCF in Python 3.5 after successful installation by pip

  jamescasbon/PyVCF#316 · Filter by author nkuyfq opened on Jul 5, 2019
  1

• Walk_together cannot handle multiple mutation on a same position

  jamescasbon/PyVCF#315 · Filter by author Wan-Yifei opened on Jun 26, 2019

• is this alive?

  jamescasbon/PyVCF#314 · Filter by author greyltc opened on May 25, 2019
  3

• Adding a new FILTER in the VCF header

  jamescasbon/PyVCF#313 · Filter by author saty89 opened on May 24, 2019

• file progression

  jamescasbon/PyVCF#312 · Filter by author dridk opened on May 2, 2019

• fetch record using "ID"

  jamescasbon/PyVCF#311 · Filter by author aparna06 opened on Apr 30, 2019

• usage example in README is outdated

  jamescasbon/PyVCF#310 · Filter by author zmiimz opened on Feb 20, 2019

• Old use of print function

  jamescasbon/PyVCF#309 · Filter by author mbhall88 opened on Feb 12, 2019