Issues

• KeyError: 'chrom' during final output merging step

  iprada/Circle-Map#112 · Filter by author bea1896 opened on Dec 5, 2025
  1

• KeyError

  iprada/Circle-Map#111 · Filter by author kotasairohith opened on Sep 2, 2025

• question about function edlib_cigar_to_iterable

  iprada/Circle-Map#110 · Filter by author jingangdidi opened on Aug 14, 2025

• what does "killed" mean here in the circle-map realign output (new to coding)

  iprada/Circle-Map#109 · Filter by author shahbazahmed108 opened on Jun 16, 2025
  1

• Repetitive circular DNA guideline

  iprada/Circle-Map#108 · Filter by author MJoseMo opened on Feb 19, 2025
  1

• Removals of duplicates before using circle-map

  iprada/Circle-Map#106 · Filter by author MJoseMo opened on Feb 14, 2025
  1

• Compatibility with other aligners

  iprada/Circle-Map#105 · Filter by author MJoseMo opened on Feb 7, 2025
  1

• Realign process stalls: Excessive BAM unpacking without analysis progression

  iprada/Circle-Map#104 · Filter by author LauraNieboer opened on Jan 29, 2025
  1

• OSError: AF_UNIX path too long

  iprada/Circle-Map#103 · Filter by author newpest opened on Sep 9, 2024
  5

• ignore unparsed_pd is empty

  iprada/Circle-Map#100 · Filter by author newpest opened on Jun 26, 2024

• RuntimeWarning in Circle-Map Realign

  iprada/Circle-Map#98 · Filter by author hanssli opened on Mar 31, 2024
  3

• A problem of searching principle of Circle-Map

  iprada/Circle-Map#97 · Filter by author FeiLiuEM opened on Oct 3, 2023
  3

• Circle-map Realign run too slow at the end.

  iprada/Circle-Map#96 · Filter by author Chester729 opened on Aug 5, 2023

• input data

  iprada/Circle-Map#95 · Filter by author CaroleBelliardo opened on Aug 2, 2023
  1

• complicated circles

  iprada/Circle-Map#94 · Filter by author natashaweiser opened on Jun 27, 2023

• some errors report about Circle-Map Repeats -i

  iprada/Circle-Map#93 · Filter by author fanch1122 opened on Jun 26, 2023

• Circle Map Realign

  iprada/Circle-Map#92 · Filter by author uretaj opened on May 2, 2023

• Circle-Map Repeats output file

  iprada/Circle-Map#91 · Filter by author simonestensgaard opened on Mar 27, 2023
  2

• How to plot the results in circular form?

  iprada/Circle-Map#90 · Filter by author ShixiangWang opened on Feb 15, 2023

• can I split alignment by chromosomes to speed up the last step

  iprada/Circle-Map#89 · Filter by author zhuyiqin opened on Dec 19, 2022

• Using bowtie2 with circle-map

  iprada/Circle-Map#88 · Filter by author nguyenkduy0510 opened on Dec 14, 2022

• Circle_Map takes an unusually long time to read files.

  iprada/Circle-Map#86 · Filter by author ghost opened on Sep 5, 2022
  1

• Update Pypi Version to 1.1.5

  iprada/Circle-Map#84 · Filter by author DSchreyer opened on Jul 12, 2022

• Why do the coordinates of the circle exceed the length of the contig？

  iprada/Circle-Map#81 · Filter by author xdli009 opened on May 11, 2022
  1

• Questions about Circle-Map bam2bam

  iprada/Circle-Map#80 · Filter by author 178875 opened on May 10, 2022