Issues

• IGV 3.0 bata with track hub does nothing obvious

  igvteam/igv#1879 · Filter by author diekhans opened on Sep 26, 2026
  14

  

• IGV 3.0 expected release date

  igvteam/igv#1862 · Filter by author bsgarciac opened on Sep 10, 2026

• Planning to contribute a view of Molecular Annotations (MA/Ma) in the future

  igvteam/igv#1851 · Filter by author mrvollger opened on Jul 31, 2026
  11

• Flip the Y-axis for the signal track

  igvteam/igv#1832 · Filter by author Miracle-Yao opened on May 15, 2026
  1

• Display notification when creating FASTA index for custom reference

  igvteam/igv#1774 · Filter by author SergeWielhouwer opened on Oct 31, 2025
  1

• sort by read length

  igvteam/igv#1721 · Filter by author MaestSi opened on Jul 21, 2025
  1

  

• Auto-regrouping of reads after toggling modified base coloring

  igvteam/igv#1714 · Filter by author itslittman opened on Jul 6, 2025 · 2.19.5
  4

  

• Load Hosted Tracks not available

  igvteam/igv#1711 · Filter by author stfacc opened on Jul 1, 2025
  4

• IGV for Apple systems really needs a dark mode

  igvteam/igv#1700 · Filter by author Sam8138 opened on May 27, 2025
  32

• problems with some bigwig tracks / saved sessions / SMB mount

  igvteam/igv#1697 · Filter by author jayoung opened on May 3, 2025
  13

• Improve error reporting when creating index. (was IGV cannot load custom genome from FASTA)

  igvteam/igv#1692 · Filter by author jakebeal opened on Apr 15, 2025
  9

  

• sort by read name

  igvteam/igv#1691 · Filter by author zhangqc723 opened on Apr 14, 2025
  3

• Read order in supplementary reads diagram

  igvteam/igv#1666 · Filter by author minw2828 opened on Mar 4, 2025
  2

• Possibility of considering base modifications when clustering alignments?

  igvteam/igv#1663 · Filter by author itslittman opened on Feb 28, 2025
  1

• Supplementary alignment statistics seem to be calculated incorrectly (IGV for windows v.2.19.1) and naming could be updated

  igvteam/igv#1658 · Filter by author stefmldk opened on Feb 13, 2025
  3

• Cluster alignements to reproduce

  igvteam/igv#1649 · Filter by author Lipinski-B opened on Jan 30, 2025
  1

• Chimeric view menu item disabled for linked alignments

  igvteam/igv#1644 · Filter by author jrobinso opened on Jan 25, 2025
  

• Windows IGV Desktop v2.19.1 Doesn't Recognize Interact-Format .bed Files

  igvteam/igv#1637 · Filter by author NikoBlank opened on Jan 8, 2025
  4

• Saved session does not preserve Display Mode for Snps tracks

  igvteam/igv#1632 · Filter by author bounlu opened on Dec 19, 2024

• using igvtools to index

  igvteam/igv#1626 · Filter by author newbiezubi opened on Dec 3, 2024
  1

• WARNING: Unknown module: jide.common specified to --add-exports

  igvteam/igv#1611 · Filter by author kamraanchal opened on Nov 4, 2024
  8

• IGV 2.18.4 does not load Whole Transcriptome Bams via pre-signed urls

  igvteam/igv#1608 · Filter by author fidibidi opened on Oct 30, 2024
  7

• Issue with Color Overlap in IGV Genome Track

  igvteam/igv#1602 · Filter by author yzhirui opened on Oct 16, 2024
  4

• Won't load track details from previous session xml file

  igvteam/igv#1601 · Filter by author ohmstead opened on Oct 14, 2024
  4

• NullPointerException if sending goto action to CommandListener when starting up IGV

  igvteam/igv#1597 · Filter by author jesper-molin opened on Oct 8, 2024