Issues

• Disable/do not consider HCV

  question
  cfe-lab/MiCall#1288 · Filter by author ammaraziz opened on May 5, 2025
  5

• Large input taking a days to process

  cfe-lab/MiCall#1285 · Filter by author ammaraziz opened on Apr 27, 2025
  15

• Decide what to do with coverage reporting in presence of large deletions.

  enhancement
  cfe-lab/MiCall#1193 · Filter by author Donaim opened on Nov 1, 2024 · far future
  1

• Simplify comparison of project definitions

  cfe-lab/MiCall#1158 · Filter by author donkirkby opened on Oct 17, 2024

• A Merger Tool

  enhancement
  Feature

  cfe-lab/MiCall#1036 · Filter by author Donaim opened on Feb 12, 2024 · near future
  1

  

• Improve coordinate concordance

  cfe-lab/MiCall#965 · Filter by author CBeelen opened on May 19, 2023 · 7.19

• Resistance run fails on Kive if the input files have already been purged

  cfe-lab/MiCall#921 · Filter by author CBeelen opened on Jan 25, 2023

• Proviral upload into QAI fails

  cfe-lab/MiCall#886 · Filter by author CBeelen opened on Nov 7, 2022 · 7.19
  1

• Collate outputs in Kive

  cfe-lab/MiCall#876 · Filter by author donkirkby opened on Oct 5, 2022 · near future
  1

• Upload HIVSeqinR

  cfe-lab/MiCall#844 · Filter by author donkirkby opened on May 17, 2022
  1

• Insertion counts for small insertions that change the reading frame

  cfe-lab/MiCall#836 · Filter by author CBeelen opened on May 10, 2022 · 7.19

• Score alignments?

  cfe-lab/MiCall#826 · Filter by author CBeelen opened on Mar 30, 2022 · near future
  

• Add insertion sequence to nuc.csv and amino.csv

  cfe-lab/MiCall#768 · Filter by author CBeelen opened on Nov 10, 2021 · 7.19

• Evidence for joins in contigs

  cfe-lab/MiCall#764 · Filter by author donkirkby opened on Oct 28, 2021 · near future
  1

• Add coverage plots and scores for non-coding regions

  cfe-lab/MiCall#725 · Filter by author donkirkby opened on Jul 5, 2021

• Negative mapped count in QAI

  bug
  cfe-lab/MiCall#719 · Filter by author donkirkby opened on Jun 21, 2021

• Evaluate other assemblers

  cfe-lab/MiCall#665 · Filter by author donkirkby opened on Jan 18, 2021
  15

  

• unpack_mixtures_and_reverse becomes computationally intractable when sequence has many ambiguous characters

  cfe-lab/MiCall#637 · Filter by author dmacmillan opened on Nov 4, 2020
  5

• Low-prevalance nucleotide mutations

  cfe-lab/MiCall#628 · Filter by author donkirkby opened on Oct 19, 2020 · 7.19

• Explain problems with pTrimmer

  enhancement
  cfe-lab/MiCall#566 · Filter by author donkirkby opened on May 14, 2020 · near future

• Align deletions after frame shift

  bug
  cfe-lab/MiCall#558 · Filter by author donkirkby opened on Apr 21, 2020 · near future

• Consider replacing Gotoh alignment algorithm

  enhancement
  cfe-lab/MiCall#556 · Filter by author donkirkby opened on Apr 17, 2020 · 7.19
  3

• Test more SARS-CoV-2 samples

  enhancement
  cfe-lab/MiCall#555 · Filter by author donkirkby opened on Apr 15, 2020 · near future
  7

  

• Speed up Kive launches

  enhancement
  cfe-lab/MiCall#514 · Filter by author donkirkby opened on Jan 10, 2020 · near future

• Improve amplicon detector

  enhancement
  cfe-lab/MiCall#487 · Filter by author donkirkby opened on Dec 4, 2019 · near future
  1