diff --git a/.gitignore b/.gitignore index ab9fc0910f..e69234bc7e 100644 --- a/.gitignore +++ b/.gitignore @@ -455,3 +455,4 @@ packages/dist # standard directory for a virtualenv env/ + diff --git a/src/amuse/community/interface/chem.py b/src/amuse/community/interface/chem.py new file mode 100644 index 0000000000..470f7a6cc1 --- /dev/null +++ b/src/amuse/community/interface/chem.py @@ -0,0 +1,709 @@ +""" +Chemical Evolution Interface Definition +""" + +from collections.abc import Sequence + +from amuse.community.interface import common +from amuse.rfi.core import ( + LegacyFunctionSpecification, + legacy_function, + remote_function +) +from amuse.units import units as u +import numpy as np +from numpy.typing import NDArray + + +class ChemicalEvolutionInterface(common.CommonCodeInterface): + + @legacy_function + def commit_particles(): + """ + Let the code perform initialization actions + after all particles have been loaded in the model. + Should be called before the first evolve call and + after the last new_particle call. + + Returns + ------- + int : + Return status: + - 0: Model is initialized and evolution can start. + - -1 : An error occurred during initialization. The error + needs to be further specified by each code implementation. + """ + function = LegacyFunctionSpecification() + function.result_type = 'i' + return function + + @legacy_function + def recommit_particles(): + """ + Let the code perform initialization actions + after the number of particles have been updated + or particle attributes have been updated from + the script. + + Returns + ------- + int : + Return status: + - 0: Model is initialized and evolution can start. + - -1: An error occurred during initialization. The error + needs to be further specified by each code implementation. + """ + function = LegacyFunctionSpecification() + function.result_type = 'i' + return function + + @legacy_function + def evolve_model(): + """ + Evolve the model until the given time, or until a stopping + condition is set. The model will be evolved until this time + is reached exactly or just after. + + Parameters + ---------- + time : float + Time to evolve the system to. + + Returns + ------- + int : + Return status: + - 0: Evolved model successfully. + - -1 : Requested time could not be evolved to. + """ + function = LegacyFunctionSpecification() + function.addParameter('time', dtype='d', direction=function.IN) + function.result_type = 'i' + return function + + @legacy_function + def delete_particle(): + """ + Remove the definition of particle from the code. After calling this + function the particle is no longer part of the model evolution. It is + up to the code if the index will be reused. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle to delete. + + Returns + ------- + int : + Return status: + - 0 : Particle was removed from the model. + - -1 : Particle could not be removed. + """ + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter( + 'index_of_the_particle', dtype='i', direction=function.IN + ) + function.result_type = 'i' + return function + + @remote_function(can_handle_array=True) + def get_ionrate(index_of_the_particle='i'): + """ + Retrieve the ionization rate of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + + Returns + ------- + ionrate : float + Ionrate of the particle in units of s**-1. + """ + returns (ionrate='d') + + @remote_function(can_handle_array=True) + def set_ionrate(index_of_the_particle='i', ionrate='d'): + """ + Set the ionization rate of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + ionrate : float + Ionrate of the particle in units of s**-1. + """ + returns () + + @remote_function(can_handle_array=True) + def get_abundance(index_of_the_particle='i', species_index='i'): + """ + Retrieve the chemical abundance of a species by index for a given particle. + + The `species_index` can be queried for using the methods `get_species_index` + and `get_species_name`. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + species_index : int + Index of the species in the abundance array. + + Returns + ------- + abundance : float + Abundance of the requested species. + + Examples + -------- + # get H2O abundance of particle 0 + >>> get_species_index('H2O') + 2 + >>> get_abundance(0, 2) + 0.005 + """ + returns (abundance='d') + + @remote_function(can_handle_array=True) + def set_abundance( + index_of_the_particle='i', species_index='i', abundance='d' + ): + """ + Set the chemical abundance of a species by index for a given particle. + + The `species_index` can be queried for using the methods `get_species_index` + and `get_species_name`. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + species_index : int + Index of the species in the abundance array. + abundance : float + Abundance of the species to set. + + Examples + -------- + # set H2O abundance of particle 0 + >>> get_species_index('H2O') + 2 + >>> set_abundance(0, 2, 0.005) + """ + returns () + + @remote_function(must_handle_array=True) + def set_abundances(index_of_the_particle='i', abundances='d'): + """ + Set all the abundances of a particle from an array. + The abundance array must match the shape of the abundance + array in the chemical evolution code. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + abundances : np.ndarray + Array of abundances. Must match the shape of + the abundance array inside the chemistry code. + + Examples + -------- + >>> abundances = np.random.rand(100) + >>> chem.set_abundances(0, abundances) + + Notes + ----- + # to get the abundance array of a particle, use: + >>> chem.particles[0].abundances + [0.0005, 0.0004, ...] + """ + returns () + + @remote_function() + def get_firstlast_species_index(): + """ + Retrieve the index bounds of the chemical abundance array. + + Used internally by the ChemicalEvolutionInterface. + + Returns + ------- + first : int + Index of the first species in the abundance array. + last : int + Index of the last species in the abundance array. + """ + returns (first='i', last='i') + + @remote_function + def get_species_index(name='s'): + """ + Given the name of a chemical species in the + chemical abundance array, retrieve its index. + + Chemical abundances for each particle are stored + as a 1D array, where each element corresponds to + the abundance of a particular species. + + Parameters + ---------- + name : str + Name of species. + + Returns + ------- + species_index : int + Index of the species in the abundance array. + + Examples + -------- + >>> chem.get_species_index('H') + 0 + """ + returns (species_index='i') + + @remote_function + def get_species_name(species_index='i'): + """ + Given the index of a chemical species in the + chemical abundance array, retrieve its name. + + Chemical abundances for each particle are stored + as a 1D array, where each element corresponds to + the abundance of a particular species. + + Parameters + ---------- + species_index : int + Index of the species. + + Returns + ------- + name : str + Species name corresponding to the input index. + + Examples + -------- + >>> chem.get_species_name(0) + 'H' + """ + returns (name='s') + + @remote_function + def get_time(): + """ + Retrieve the model time. This time should be close to the end time + specified in the evolve code. + + Returns + ------- + time : float + Current model time. + """ + returns (time='d') + + @remote_function + def get_number_of_particles(): + """ + Retrieve the total number of particles defined in the code. + + Returns + ------- + number_of_particles : int + Current number of particles in the model. + + Notes + ----- + `number_of_particles` may not be updated if particles are + deleted. To ensure the correct number is returned, call + `commit_particles` or `recommit_particles` before calling + `get_number_of_particles`. + """ + returns (number_of_particles='i') + + +class ChemNumberDensityTemperatureInterface: + """ + Mixin for number density and temperature setters + and getters in ChemicalEvolutionInterface. + """ + @remote_function(can_handle_array=True) + def get_number_density(index_of_the_particle='i'): + """ + Retrieve the number density of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + + Returns + ------- + number_density : float + Number density of the particle in units of cm**-3. + """ + returns (number_density='d') + + @remote_function(can_handle_array=True) + def set_number_density(index_of_the_particle='i', number_density='d'): + """ + Set the number density of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + number_density : float + Number density of the particle in units of cm**-3. + """ + returns () + + @remote_function(can_handle_array=True) + def get_temperature(index_of_the_particle='i'): + """ + Retrieve the temperature of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + + Returns + ------- + temperature : float + Temperature of the particle in units of Kelvin. + """ + returns (temperature='d') + + @remote_function(can_handle_array=True) + def set_temperature(index_of_the_particle='i', temperature='d'): + """ + Set the temperature of a particle. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle. + temperature : float + Temperature of the particle in units of Kelvin. + """ + returns () + + +class ChemDensityInternalEnergyInterface: + """ + Mixin for density and internal energy setters + and getters in ChemicalEvolutionInterface. + """ + @remote_function(can_handle_array=True) + def get_density(index_of_the_particle='i'): + """ + Get the density of a particle. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle to retrieve the density of. + + Returns + ------- + rho : float + Density retrieved from the particle, in units of g*cm**-3. + """ + returns (rho='d') + + @remote_function(can_handle_array=True) + def set_density(index_of_the_particle='i', rho='d'): + """ + Set the density of a particle. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle to set the density of. + rho : float + Density to set for the particle, in units of g*cm**-3. + """ + returns () + + @remote_function(can_handle_array=True) + def get_internal_energy(index_of_the_particle='i'): + """ + Get the internal energy of a particle. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle to retrieve the internal energy of. + + Returns + ------- + u : float + Internal energy retrieved from the particle, in units of cm**2*s**-2. + """ + returns (u='d') + + @remote_function(can_handle_array=True) + def set_internal_energy(index_of_the_particle='i', u='d'): + """ + Set the internal energy of a particle. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle to set the internal energy of. + u : float + Internal energy to set for the particle, in units of cm**2*s**-2. + """ + returns () + + +class ChemicalEvolution(common.CommonCode): + + def __init__(self, legacy_interface, unit_converter=None, **options): + self.unit_converter = unit_converter + + common.CommonCode.__init__(self, legacy_interface, **options) + + def get_abundances_by_name( + self, + index_of_the_particle: int, + species_names: str | Sequence[str] + ) -> NDArray[np.float64]: + """ + Get the abundances of a particle at the current simulation time + by species name. Both a single species name or a sequence of names + are valid inputs. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + species_names : str | Sequence[str] + Species name(s) to query. Each name must be a species + tracked by the chemistry code network. A single name is + also a valid input. + + Returns + ------- + abundances : np.ndarray[float] + Array containing the current abundances of the particle for + each species name passed in. + + Examples + -------- + >>> chem = ChemicalEvolution() + >>> chem.particles.add_particles(particles) + >>> chem.get_abundances_by_name(1, ['H','H2']) + [1.00000000e-40, 1.00000000e-40] + + Notes + ----- + To obtain a dictionary of each (species: index) in a chemistry code: + >>> chem = ChemicalEvolution() + >>> chem.species + {'E': 0, 'H-': 1, 'H': 2, 'HE': 3, 'H2': 4, ...} + """ + if isinstance(species_names, str): + species_names = [species_names] + + species_indices = np.asarray( + [self.get_species_index(name) for name in species_names], + dtype=np.int32, + ) + particle_indices = np.full( + species_indices.shape, index_of_the_particle, dtype=np.int32 + ) + + return np.asarray( + self.get_abundance(particle_indices, species_indices) + ) + + def define_properties(self, handler): + handler.add_property('get_time', public_name='model_time') + + def define_methods(self, handler): + common.CommonCode.define_methods(self, handler) + + handler.add_method('evolve_model', (u.yr,), (handler.ERROR_CODE,)) + + handler.add_method( + 'delete_particle', (handler.INDEX,), (handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_ionrate', + (handler.INDEX,), + (u.s**-1, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_ionrate', + (handler.INDEX, u.s**-1,), + (handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_abundance', + (handler.INDEX, handler.INDEX,), + (handler.NO_UNIT, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_abundance', + (handler.INDEX, handler.INDEX, handler.NO_UNIT,), + (handler.ERROR_CODE,) + ) + + handler.add_method( + 'set_abundances', + (handler.INDEX, handler.NO_UNIT,), + (handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_firstlast_species_index', + (), + (handler.NO_UNIT, handler.NO_UNIT, handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_species_index', + (handler.NO_UNIT,), + (handler.INDEX, handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_species_name', + (handler.INDEX,), + (handler.NO_UNIT, handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_time', (), (u.yr, handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_number_of_particles', + (), + (handler.NO_UNIT, handler.ERROR_CODE,), + ) + + def define_particle_sets(self, handler): + handler.define_set('particles', 'index_of_the_particle') + handler.set_new('particles', 'new_particle') + handler.set_delete('particles', 'delete_particle') + handler.add_setter('particles', 'set_state') + handler.add_getter('particles', 'get_state') + handler.add_setter('particles', 'set_ionrate') + handler.add_getter('particles', 'get_ionrate') + handler.add_gridded_getter( + 'particles', + 'get_abundance', + 'get_firstlast_species_index', + names=('abundances',), + ) + handler.add_gridded_setter( + 'particles', + 'set_abundance', + 'get_firstlast_species_index', + names=('abundances',), + ) + + def define_state(self, handler): + common.CommonCode.define_state(self, handler) + handler.add_transition('INITIALIZED', 'EDIT', 'commit_parameters') + handler.add_transition('RUN', 'PARAMETER_CHANGE_A', 'invoke_state_change2') + handler.add_transition('EDIT', 'PARAMETER_CHANGE_B', 'invoke_state_change2') + handler.add_transition('PARAMETER_CHANGE_A', 'RUN', 'recommit_parameters') + handler.add_transition('PARAMETER_CHANGE_B', 'EDIT', 'recommit_parameters') + handler.add_method('EDIT', 'new_particle') + handler.add_method('EDIT', 'delete_particle') + handler.add_transition('EDIT', 'RUN', 'commit_particles') + handler.add_transition('RUN', 'UPDATE', 'new_particle', False) + handler.add_transition('RUN', 'UPDATE', 'delete_particle', False) + handler.add_transition('UPDATE', 'RUN', 'recommit_particles') + handler.add_method('RUN', 'evolve_model') + handler.add_method('RUN', 'get_state') + handler.add_method('RUN', 'get_abundance') + + +class ChemNumberDensityTemperature: + """ + Mixin for number density and temperature setters + and getters in ChemicalEvolution. + """ + def define_methods(self, handler): + handler.add_method( + 'get_number_density', + (handler.INDEX,), + (u.cm**-3, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_number_density', + (handler.INDEX, u.cm**-3,), + (handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_temperature', + (handler.INDEX,), + (u.K, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_temperature', + (handler.INDEX, u.K,), + (handler.ERROR_CODE,), + ) + + def define_particle_sets(self, handler): + handler.add_setter('particles', 'set_number_density') + handler.add_getter('particles', 'get_number_density') + handler.add_setter('particles', 'set_temperature') + handler.add_getter('particles', 'get_temperature') + + +class ChemDensityInternalEnergy: + """ + Mixin for density and internal energy setters + and getters in ChemicalEvolution. + """ + + def define_methods(self, handler): + handler.add_method( + 'get_density', + (handler.INDEX,), + (u.g * u.cm**-3, handler.ERROR_CODE), + ) + + handler.add_method( + 'set_density', + (handler.INDEX, u.g * u.cm**-3), + (handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_internal_energy', + (handler.INDEX,), + (u.cm**2 * u.s**-2, handler.ERROR_CODE), + ) + + handler.add_method( + 'set_internal_energy', + (handler.INDEX, u.cm**2 * u.s**-2), + (handler.ERROR_CODE,), + ) + + def define_particle_sets(self, handler): + handler.add_setter('particles', 'set_density') + handler.add_getter('particles', 'get_density') + handler.add_setter('particles', 'set_internal_energy') + handler.add_getter('particles', 'get_internal_energy') diff --git a/src/amuse/community/krome/__init__.py b/src/amuse/community/krome/__init__.py index abc2ff7d27..45408b9091 100644 --- a/src/amuse/community/krome/__init__.py +++ b/src/amuse/community/krome/__init__.py @@ -1 +1 @@ -from .interface import Krome +from amuse.community.krome.interface import Krome diff --git a/src/amuse/community/krome/interface.py b/src/amuse/community/krome/interface.py index 74ea9eca60..4f947f070a 100644 --- a/src/amuse/community/krome/interface.py +++ b/src/amuse/community/krome/interface.py @@ -1,7 +1,4 @@ from amuse.support.import_helper import load_code - -KromeInterface = load_code("krome", "KromeInterface") -Krome = load_code("krome", "Krome") - -Krome = Krome +KromeInterface = load_code('krome', 'KromeInterface') +Krome = load_code('krome', 'Krome') diff --git a/src/amuse/community/kromesph/__init__.py b/src/amuse/community/kromesph/__init__.py new file mode 100644 index 0000000000..ba8db31ada --- /dev/null +++ b/src/amuse/community/kromesph/__init__.py @@ -0,0 +1 @@ +from amuse.community.kromesph.interface import KromeSph diff --git a/src/amuse/community/kromesph/interface.py b/src/amuse/community/kromesph/interface.py new file mode 100644 index 0000000000..16f881e15a --- /dev/null +++ b/src/amuse/community/kromesph/interface.py @@ -0,0 +1,4 @@ +from amuse.support.import_helper import load_code + +KromeSphInterface = load_code('kromesph', 'KromeSphInterface') +KromeSph = load_code('kromesph', 'KromeSph') diff --git a/src/amuse/community/uclchem/__init__.py b/src/amuse/community/uclchem/__init__.py new file mode 100644 index 0000000000..d7b5c0fa4d --- /dev/null +++ b/src/amuse/community/uclchem/__init__.py @@ -0,0 +1 @@ +from amuse.community.uclchem.interface import Uclchem diff --git a/src/amuse/community/uclchem/interface.py b/src/amuse/community/uclchem/interface.py new file mode 100644 index 0000000000..aed3a7324b --- /dev/null +++ b/src/amuse/community/uclchem/interface.py @@ -0,0 +1,4 @@ +from amuse.support.import_helper import load_code + +UclchemInterface = load_code('uclchem', 'UclchemInterface') +Uclchem = load_code('uclchem', 'Uclchem') diff --git a/src/amuse/datamodel/base.py b/src/amuse/datamodel/base.py index 6fee8dcbea..eb2e57ddba 100644 --- a/src/amuse/datamodel/base.py +++ b/src/amuse/datamodel/base.py @@ -383,7 +383,7 @@ def _set_values_for_entities(self, value): class VectorAttribute(DerivedAttribute): """ - Combine multiple attributes into a vecter attribute + Combine multiple attributes into a vector attribute """ def __init__(self, attribute_names): diff --git a/src/amuse/units/units.py b/src/amuse/units/units.py index 92f2fb8c3d..6e1ce7de12 100644 --- a/src/amuse/units/units.py +++ b/src/amuse/units/units.py @@ -81,6 +81,9 @@ erg = named("erg", "erg", 1e-7 * J) barye = named("barye", "Ba", 0.1 * Pa) +# radiation field +habing = named("habing", "hab", 1.6e-3 * erg * cm**-2 * s**-1) + # imperial distance units inch = named("inch", "in", 0.0254 * m) foot = named("foot", "ft", 0.3048 * m) diff --git a/src/amuse_krome/__init__.py b/src/amuse_krome/__init__.py index abc2ff7d27..68693290d9 100644 --- a/src/amuse_krome/__init__.py +++ b/src/amuse_krome/__init__.py @@ -1 +1 @@ -from .interface import Krome +from amuse_krome.interface import Krome diff --git a/src/amuse_krome/interface.f90 b/src/amuse_krome/interface.f90 index 80ffec6c94..1ad8987e50 100644 --- a/src/amuse_krome/interface.f90 +++ b/src/amuse_krome/interface.f90 @@ -1,126 +1,219 @@ function initialize_code() result(ret) - use chem_mod + use chem_mod, only : chem_initialize + implicit none integer :: ret - ret=chem_initialize() -end function + ret = chem_initialize() +end function initialize_code function cleanup_code() result(ret) - use chem_mod + use chem_mod, only : chem_end + implicit none integer :: ret - ret=chem_end() -end function + ret = chem_end() +end function cleanup_code + +function commit_parameters() result(ret) + use chem_mod, only : chem_commit_parameters + implicit none + integer :: ret + ret = chem_commit_parameters() +end function commit_parameters + +function recommit_parameters() result(ret) + use chem_mod, only : chem_commit_parameters + implicit none + integer :: ret + ret = chem_commit_parameters() +end function recommit_parameters function commit_particles() result(ret) - use chem_mod + use chem_mod, only : chem_commit_particles + implicit none integer :: ret - ret=chem_commit_particles() -end function + ret = chem_commit_particles() +end function commit_particles function recommit_particles() result(ret) - use chem_mod + use chem_mod, only : chem_commit_particles + implicit none integer :: ret - ret=chem_commit_particles() -end function + ret = chem_commit_particles() +end function recommit_particles -function commit_parameters() result(ret) - use chem_mod +function evolve_model(time) result(ret) + use chem_mod, only : evolve_chem_model + implicit none + double precision, intent(in) :: time integer :: ret - ret=chem_commit_parameters() -end function + ret = evolve_chem_model(time) +end function evolve_model + +function new_particle(index_of_the_particle, number_density, temperature, ionrate) result(ret) + use chem_mod, only : add_particle + implicit none + integer, intent(out) :: index_of_the_particle + double precision, intent(in) :: number_density, temperature, ionrate + integer :: ret + ret = add_particle(index_of_the_particle, number_density, temperature, ionrate) +end function new_particle -function recommit_parameters() result(ret) - use chem_mod - integer :: ret - ret=chem_commit_parameters() -end function - -function get_number_of_particles(n) result(ret) - use chem_mod - integer n,ret - n=nparticle - ret=0 -end function - -function new_particle(id,density,temperature,ionrate) result(ret) - use chem_mod - integer :: ret,id - double precision :: density,temperature,ionrate - ret=add_particle(id,density,temperature,ionrate) -end function - -function set_state(id,density,temperature,ionrate) result(ret) - use chem_mod - integer :: ret,id - double precision :: density,temperature,ionrate - ret=set_particle_state(id,density,temperature,ionrate) -end function - -function get_state(id,density,temperature,ionrate) result(ret) - use chem_mod - integer :: ret,id - double precision :: density,temperature,ionrate - ret=get_particle_state(id,density,temperature,ionrate) -end function - -function get_abundance(id,aid,x) result(ret) - use chem_mod - integer ret,id,aid - double precision x - ret=get_particle_abundance(id,aid,x) -end function - -function set_abundance(id,aid,x) result(ret) - use chem_mod - integer ret,id,aid - double precision x - ret=set_particle_abundance(id,aid,x) -end function - -function get_firstlast_abundance(first,last) result(ret) - use chem_mod - integer ret,first,last - first=1 - last=krome_nmols ! this is the last species defined in amuse_helpers.f90 - ret=0 -end function - -function get_name_of_species(i,s) result(ret) - use chem_mod - integer ret,i - character*16 :: ss(krome_nmols),s - if(i.LT.1.OR.i.GT.krome_nmols) then - ret=-1 +function delete_particle(index_of_the_particle) result(ret) + use chem_mod, only : remove_particle + implicit none + integer, intent(in) :: index_of_the_particle + integer :: ret + ret = remove_particle(index_of_the_particle) +end function delete_particle + +function get_state(index_of_the_particle, number_density, temperature, ionrate) result(ret) + use chem_mod, only : get_particle_state + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: number_density, temperature, ionrate + integer :: ret + ret = get_particle_state(index_of_the_particle, number_density, temperature, ionrate) +end function get_state + +function set_state(index_of_the_particle, number_density, temperature, ionrate) result(ret) + use chem_mod, only : set_particle_state + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: number_density, temperature, ionrate + integer :: ret + ret = set_particle_state(index_of_the_particle, number_density, temperature, ionrate) +end function set_state + +function get_number_density(index_of_the_particle, number_density) result(ret) + use chem_mod, only : get_particle_density + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: number_density + integer :: ret + ret = get_particle_density(index_of_the_particle, number_density) +end function get_number_density + +function set_number_density(index_of_the_particle, number_density) result(ret) + use chem_mod, only : set_particle_density + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: number_density + integer :: ret + ret = set_particle_density(index_of_the_particle, number_density) +end function set_number_density + +function get_temperature(index_of_the_particle, temperature) result(ret) + use chem_mod, only : get_particle_temperature + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: temperature + integer :: ret + ret = get_particle_temperature(index_of_the_particle, temperature) +end function get_temperature + +function set_temperature(index_of_the_particle, temperature) result(ret) + use chem_mod, only : set_particle_temperature + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: temperature + integer :: ret + ret = set_particle_temperature(index_of_the_particle, temperature) +end function set_temperature + +function get_ionrate(index_of_the_particle, ionrate) result(ret) + use chem_mod, only : get_particle_ionrate + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: ionrate + integer :: ret + ret = get_particle_ionrate(index_of_the_particle, ionrate) +end function get_ionrate + +function set_ionrate(index_of_the_particle, ionrate) result(ret) + use chem_mod, only : set_particle_ionrate + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: ionrate + integer :: ret + ret = set_particle_ionrate(index_of_the_particle, ionrate) +end function set_ionrate + +function get_abundance(index_of_the_particle, species_index, abundance) result(ret) + use chem_mod, only : get_particle_abundance + implicit none + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(out) :: abundance + integer :: ret + ret = get_particle_abundance(index_of_the_particle, species_index, abundance) +end function get_abundance + +function set_abundance(index_of_the_particle, species_index, abundance) result(ret) + use chem_mod, only : set_particle_abundance + implicit none + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(in) :: abundance + integer :: ret + ret = set_particle_abundance(index_of_the_particle, species_index, abundance) +end function set_abundance + +function set_abundances(index_of_the_particle, abundances, N) result(ret) + use chem_mod, only : set_particle_abundances + implicit none + integer, intent(in) :: N + integer, intent(in) :: index_of_the_particle(N) + double precision, intent(in) :: abundances(N) + integer :: ret + ret = set_particle_abundances(index_of_the_particle, abundances, N) +end function set_abundances + +function get_firstlast_species_index(first, last) result(ret) + use chem_mod, only : krome_nmols + implicit none + integer, intent(out) :: first, last + integer :: ret + first = 1 + last = krome_nmols ! this is the last species defined in amuse_helpers.f90 + ret = 0 +end function get_firstlast_species_index + +function get_species_index(name, species_index) result(ret) + use chem_mod, only : krome_get_index + implicit none + character(len=16), intent(in) :: name + integer, intent(out) :: species_index + integer :: ret + species_index = krome_get_index(name) + ret = 0 +end function get_species_index + +function get_species_name(species_index, name) result(ret) + use chem_mod, only : krome_get_names, krome_nmols + implicit none + integer, intent(in) :: species_index + character(len=16), intent(out) :: name + integer :: ret + character(len=16) :: names(krome_nmols) + if(species_index .LT. 1 .OR. species_index .GT. krome_nmols) then + ret = -1 return endif - ss=krome_get_names() - s=ss(i) - ret=0 -end function - -function get_index_of_species(s,i) result(ret) - use chem_mod - integer ret,i - character*16 s - i=krome_get_index(s) - ret=0 -end function - -function evolve_model(tend) result(ret) - use chem_mod - integer :: ret - double precision :: tend - ret=evolve_chem_model(tend) -end function - -function get_time(outtime) result(ret) - use chem_mod - integer :: ret - double precision :: outtime - ret=chem_model_time(outtime) -end function - -function delete_particle(id) result(ret) - use chem_mod - integer :: ret,id - ret=remove_particle(id) -end function + names = krome_get_names() + name = names(species_index) + ret = 0 +end function get_species_name + +function get_time(time) result(ret) + use chem_mod, only : chem_model_time + implicit none + double precision, intent(out) :: time + integer :: ret + ret = chem_model_time(time) +end function get_time + +function get_number_of_particles(number_of_particles) result(ret) + use chem_mod, only : nparticle + implicit none + integer, intent(out) :: number_of_particles + integer :: ret + number_of_particles = nparticle + ret = 0 +end function get_number_of_particles diff --git a/src/amuse_krome/interface.py b/src/amuse_krome/interface.py index 66e0ecc1f9..9175edd73a 100644 --- a/src/amuse_krome/interface.py +++ b/src/amuse_krome/interface.py @@ -1,69 +1,71 @@ -import os.path -from amuse.community.interface.common import CommonCodeInterface, CommonCode -from amuse.community import * -from amuse.support.options import option - -#(Grevesse & Sauval, 1998, Space Sci. Rev. 85, 161) -solar_abundances= dict(H=1., - HE=.085, - C=3.31e-4, - N=8.3e-5, - O=6.76e-4, - Ne=1.2e-4, - SI=3.55e-5, - Fe=3.2e-5) - -class KromeInterface(CodeInterface, CommonCodeInterface, LiteratureReferencesMixIn): +from amuse.community.interface.chem import ( + ChemNumberDensityTemperature, + ChemicalEvolution, + ChemicalEvolutionInterface, + ChemNumberDensityTemperatureInterface +) +from amuse.rfi.core import ( + CodeInterface, + LegacyFunctionSpecification, + legacy_function +) +from amuse.support.literature import LiteratureReferencesMixIn +from amuse.units import units as u + + +# (Grevesse & Sauval, 1998, Space Sci. Rev. 85, 161) +solar_abundances= dict( + H = 1.0, HE = 0.085, + C = 3.31e-4, N = 8.3e-5, O = 6.76e-4, + Ne = 1.2e-4, SI = 3.55e-5, Fe = 3.2e-5 +) + + +class KromeInterface( + CodeInterface, + ChemicalEvolutionInterface, + ChemNumberDensityTemperatureInterface, + LiteratureReferencesMixIn +): """ - - KROME - a package to embed chemistry in astrophysical simulations + KROME: a package to embed chemistry in astrophysical simulations. .. [#] Grassi, T.; Bovino, S.; Schleicher, D. R. G.; Prieto, J.; Seifried, D.; Simoncini, E.; Gianturco, F. A., MNRAS, 439, 3, p.2386-2419 [2014MNRAS.439.2386G] """ def __init__(self, **options): - CodeInterface.__init__(self, name_of_the_worker = self.name_of_the_worker(), **options) + CodeInterface.__init__( + self, name_of_the_worker = self.name_of_the_worker(), **options + ) LiteratureReferencesMixIn.__init__(self) def name_of_the_worker(self): return 'krome_worker' - @legacy_function - def commit_particles(): - function = LegacyFunctionSpecification() - function.result_type = 'i' - return function - - @legacy_function - def commit_parameters(): - function = LegacyFunctionSpecification() - function.result_type = 'i' - return function - - def recommit_parameters(): - return self.commit_parameters() - - @legacy_function - def recommit_particles(): - function = LegacyFunctionSpecification() - function.result_type = 'i' - return function - @legacy_function def new_particle(): + """ + Add a new particle to Krome. + + Parameters + ---------- + number_density : float + Number density of the particle in units of cm**-3. + temperature : float + Temperature of the particle in units of K. + ionrate : float + Ionization rate of the particle in units of s**-1. + + Returns + ------- + index_of_the_particle : int + Id of the newly created particle, returned by Krome. + int : + 0 on success. + """ function = LegacyFunctionSpecification() function.can_handle_array = True - function.addParameter('id', dtype='int32', direction=function.OUT) - for x in ['number_density','temperature','ionrate']: - function.addParameter(x, dtype='d', direction=function.IN) - function.result_type = 'i' - return function - - @legacy_function - def set_state(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('id', dtype='i', direction=function.IN) + function.addParameter('index_of_the_particle', dtype='i', direction=function.OUT) for x in ['number_density','temperature','ionrate']: function.addParameter(x, dtype='d', direction=function.IN) function.result_type = 'i' @@ -71,223 +73,109 @@ def set_state(): @legacy_function def get_state(): + """ + Retrieve the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + + Returns + ------- + number_density : float + Number density of the particle in units of cm**-3. + temperature : float + Temperature of the particle in units of K. + ionrate : float + Ionization rate of the particle in units of s**-1. + int : + 0 on success. + """ function = LegacyFunctionSpecification() function.can_handle_array = True - function.addParameter('id', dtype='i', direction=function.IN) + function.addParameter('index_of_the_particle', dtype='i', direction=function.IN) for x in ['number_density','temperature','ionrate']: function.addParameter(x, dtype='d', direction=function.OUT) function.result_type = 'i' return function @legacy_function - def set_abundance(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('id', dtype='i', direction=function.IN) - function.addParameter('aid', dtype='i', direction=function.IN) - function.addParameter('abundance', dtype='d', direction=function.IN) - function.result_type = 'i' - return function - - @legacy_function - def get_abundance(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('id', dtype='i', direction=function.IN) - function.addParameter('aid', dtype='i', direction=function.IN) - function.addParameter('abundance', dtype='d', direction=function.OUT) - function.result_type = 'i' - return function - - @legacy_function - def get_firstlast_abundance(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('first', dtype='i', direction=function.OUT) - function.addParameter('last', dtype='i', direction=function.OUT) - function.result_type = 'i' - return function - - @legacy_function - def get_index_of_species(): + def set_state(): + """ + Set the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + number_density : float + Number density of the particle in units of cm**-3. + temperature : float + Temperature of the particle in units of K. + ionrate : float + Ionization rate of the particle in units of s**-1. + + Returns + ------- + int : + 0 on success. + """ function = LegacyFunctionSpecification() function.can_handle_array = True - function.addParameter('name', dtype='s', direction=function.IN) - function.addParameter('index', dtype='i', direction=function.OUT) + function.addParameter('index_of_the_particle', dtype='i', direction=function.IN) + for x in ['number_density','temperature','ionrate']: + function.addParameter(x, dtype='d', direction=function.IN) function.result_type = 'i' return function - @legacy_function - def get_name_of_species(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('index', dtype='i', direction=function.IN) - function.addParameter('name', dtype='s', direction=function.OUT) - function.result_type = 'i' - return function - @legacy_function - def evolve_model(): - function = LegacyFunctionSpecification() - function.addParameter('time_end', dtype='d', direction=function.IN) - function.result_type = 'i' - return function +class Krome(ChemicalEvolution, ChemNumberDensityTemperature): + """Krome is a package to embed chemistry in astrophysical simulations.""" + def __init__(self, unit_converter=None, **options): - @legacy_function - def get_time(): - function = LegacyFunctionSpecification() - function.addParameter('time', dtype='float64', direction=function.OUT) - function.result_type = 'int32' - return function + if unit_converter is not None: + raise Exception('Krome uses predefined units') - @legacy_function - def delete_particle(): - function = LegacyFunctionSpecification() - function.can_handle_array = True - function.addParameter('id', dtype='int32', direction=function.IN) - function.result_type = 'i' - return function + ChemicalEvolution.__init__(self, KromeInterface(**options)) -class Krome(CommonCode): + first, last = self.get_firstlast_species_index() + self.species = dict() + for i in range(first, last+1): + self.species[self.get_species_name(i)] = i - def __init__(self,unit_converter = None, **options): - - if unit_converter is not None: - raise Exception("krome uses predefined units") - - InCodeComponentImplementation.__init__(self, KromeInterface(**options)) - first,last=self.get_firstlast_abundance() - self.species=dict() - for i in range(first,last+1): - self.species[self.get_name_of_species(i)]=i-1 -# self.set_data_directory(self.data_directory()) -# self.set_output_directory(self.output_directory()) - def define_properties(self, handler): - handler.add_property('get_time', public_name = "model_time") + handler.add_property('get_time', public_name='model_time') def define_methods(self, handler): - CommonCode.define_methods(self, handler) - handler.add_method( - 'evolve_model', - ( - units.s, - ), - ( - handler.ERROR_CODE, - ) - ) - handler.add_method( - "new_particle", - ( - units.cm**-3, - units.K, - units.s**-1, - ), - ( - handler.INDEX, - handler.ERROR_CODE, - ) - ) - handler.add_method( - "set_state", - ( - handler.NO_UNIT, - units.cm**-3, - units.K, - units.s**-1, - ), - ( - handler.ERROR_CODE, - ) - ) - handler.add_method( - "get_state", - ( - handler.INDEX, - ), - ( - units.cm**-3, - units.K, - units.s**-1, - handler.ERROR_CODE, - ) - ) + ChemicalEvolution.define_methods(self, handler) + ChemNumberDensityTemperature.define_methods(self, handler) handler.add_method( - "get_abundance", - ( - handler.INDEX, - handler.INDEX, - ), - ( - handler.NO_UNIT, - handler.ERROR_CODE, - ) + 'evolve_model', (u.s,), (handler.ERROR_CODE,) ) + handler.add_method( - "set_abundance", - ( - handler.INDEX, - handler.INDEX, - handler.NO_UNIT, - ), - ( - handler.ERROR_CODE, - ) + 'new_particle', + (u.cm**-3, u.K, u.s**-1,), + (handler.INDEX, handler.ERROR_CODE,) ) + handler.add_method( - "delete_particle", - ( - handler.INDEX, - ), - ( - handler.ERROR_CODE, - ) + 'get_state', + (handler.INDEX,), + (u.cm**-3, u.K, u.s**-1, handler.ERROR_CODE,) ) + handler.add_method( - "get_firstlast_abundance", - ( - ), - ( - handler.NO_UNIT, - handler.NO_UNIT, - handler.ERROR_CODE, - ) + 'set_state', + (handler.INDEX, u.cm**-3, u.K, u.s**-1,), + (handler.ERROR_CODE,) ) + handler.add_method( - "get_time", - ( - ), - ( - units.s, - handler.ERROR_CODE, - ) + 'get_time', (), (u.s, handler.ERROR_CODE,) ) def define_particle_sets(self, handler): - handler.define_set('particles', 'id') - handler.set_new('particles', 'new_particle') - handler.set_delete('particles', 'delete_particle') - handler.add_setter('particles', 'set_state') - handler.add_getter('particles', 'get_state') - handler.add_gridded_getter('particles', 'get_abundance','get_firstlast_abundance', names = ('abundances',)) - handler.add_gridded_setter('particles', 'set_abundance','get_firstlast_abundance', names = ('abundances',)) - - def define_state(self, handler): - CommonCode.define_state(self, handler) - handler.add_transition('INITIALIZED','EDIT','commit_parameters') - handler.add_transition('RUN','PARAMETER_CHANGE_A','invoke_state_change2') - handler.add_transition('EDIT','PARAMETER_CHANGE_B','invoke_state_change2') - handler.add_transition('PARAMETER_CHANGE_A','RUN','recommit_parameters') - handler.add_transition('PARAMETER_CHANGE_B','EDIT','recommit_parameters') - handler.add_method('EDIT', 'new_particle') - handler.add_method('EDIT', 'delete_particle') - handler.add_transition('EDIT', 'RUN', 'commit_particles') - handler.add_transition('RUN', 'UPDATE', 'new_particle', False) - handler.add_transition('RUN', 'UPDATE', 'delete_particle', False) - handler.add_transition('UPDATE', 'RUN', 'recommit_particles') - handler.add_method('RUN', 'evolve_model') - handler.add_method('RUN', 'get_state') - handler.add_method('RUN', 'get_abundance') - - + ChemicalEvolution.define_particle_sets(self, handler) + ChemNumberDensityTemperature.define_particle_sets(self, handler) diff --git a/src/amuse_krome/src/amuse_helpers.f90 b/src/amuse_krome/src/amuse_helpers.f90 index 9900590a79..a2abdbd6c3 100644 --- a/src/amuse_krome/src/amuse_helpers.f90 +++ b/src/amuse_krome/src/amuse_helpers.f90 @@ -1,322 +1,406 @@ module chem_mod - use krome_main !use krome (mandatory) - use krome_user !use utility (for krome_idx_* constants and others) + use krome_main + use krome_user ! use utility (for krome_idx_* constants and others) implicit none type particle_type - integer :: id - double precision :: density + integer :: index_of_the_particle + double precision :: number_density double precision :: temperature double precision :: ionrate double precision :: abundances(krome_nmols) end type type(particle_type), allocatable :: particles(:) - - double precision :: tcurrent ! time unit = yr - + + double precision :: tcurrent ! [yr] + integer :: nparticle integer :: tot_id - integer, parameter :: NMAX=1000000 + integer, parameter :: NMAX = 1000000 - logical :: particles_searcheable=.FALSE. + logical :: particles_searcheable = .FALSE. integer, allocatable :: pid(:) contains function chem_initialize() result(ret) integer :: ret - tcurrent=0. - nparticle=0 - tot_id=0 - if(.not.allocated(particles)) allocate(particles(NMAX)) - particles(:)%density=0. - + tcurrent = 0.d0 + nparticle = 0 + tot_id = 0 + if (.not.allocated(particles)) allocate(particles(NMAX)) + particles(:)%number_density = 0.d0 call krome_init() - ret=0 - end function + end function chem_initialize function chem_end() result(ret) - integer :: ret - if(allocated(particles)) deallocate(particles) - ret=0 - end function + integer :: ret + if (allocated(particles)) deallocate(particles) + ret = 0 + end function chem_end function chem_commit_parameters() result(ret) integer :: ret - ret=0 - end function + ret = 0 + end function chem_commit_parameters function chem_commit_particles() result (ret) integer :: ret - integer :: n - integer :: i - - particles_searcheable=.FALSE. - nparticle=clean_particles(particles) - ret=0 - end function + particles_searcheable = .FALSE. + nparticle = clean_particles(particles) + ret = 0 + end function chem_commit_particles function chem_model_time(outtime) result(ret) + double precision, intent(out) :: outtime integer :: ret - double precision :: outtime - ret=0 - outtime=tcurrent - end function + outtime = tcurrent + ret = 0 + end function chem_model_time function evolve_chem_model(tend) result(ret) - integer :: ret - double precision :: tend,dt - integer :: i,iret - ret=0 - dt=tend-tcurrent - if(dt.LE.0) return - do i=1,nparticle - iret=evolve_1_particle(particles(i),dt) - ret=min(iret,ret) + double precision, intent(in) :: tend + double precision :: dt + integer :: i, iret, ret + ret = 0 + dt = tend - tcurrent + if (dt .LE. 0) return + do i=1, nparticle + iret = evolve_1_particle(particles(i), dt) + ret = min(iret, ret) enddo - tcurrent=tend - end function - - function evolve_1_particle(particle,dt) result(ret) + tcurrent = tend + end function evolve_chem_model + + function evolve_1_particle(particle, dt) result(ret) + type(particle_type), intent(inout) :: particle + double precision, intent(in) :: dt + double precision :: cr, T + double precision :: n(krome_nmols) integer :: ret - type(particle_type) :: particle - double precision :: tend,dt - double precision :: n(krome_nmols),T,cr - - n=particle%abundances*particle%density + n = particle%abundances * particle%number_density T = particle%temperature cr = particle%ionrate call krome_set_user_crate(cr) call krome_set_user_Av(1.d0) call krome_set_user_Tdust(1.d1) call krome(n, T, dt) - particle%temperature=T - particle%abundances=n/particle%density - ret=0 - end function - - function get_particle_abundance(id, aid, abundance) result(ret) - integer :: ret - integer :: id,index,aid - double precision :: abundance - index=find_particle(id) - if(index.LT.0) then - ret=index + particle%temperature = T + particle%abundances = n/particle%number_density + ret = 0 + end function evolve_1_particle + + function get_particle_density(index_of_the_particle, number_density) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: number_density + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index return endif - if(aid.LT.1.OR.aid.GT.krome_nmols) then - ret=-1 + number_density = particles(index)%number_density + ret = 0 + end function get_particle_density + + function set_particle_density(index_of_the_particle, number_density) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: number_density + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index return endif - abundance=particles(index)%abundances(aid) - ret=0 - end function - - function set_particle_abundance(id, aid, abundance) result(ret) - integer :: ret - integer :: id,index,aid - double precision :: abundance - index=find_particle(id) - if(index.LT.0) then - ret=index + particles(index)%number_density = number_density + ret = 0 + end function set_particle_density + + function get_particle_temperature(index_of_the_particle, temperature) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: temperature + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index return endif - if(aid.LT.1.OR.aid.GT.krome_nmols) then - ret=-1 + temperature = particles(index)%temperature + ret = 0 + end function get_particle_temperature + + function set_particle_temperature(index_of_the_particle, temperature) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: temperature + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index return endif - particles(index)%abundances(aid)=abundance - ret=0 - end function - - function set_particle_state(id,density,temperature,ionrate) result(ret) - integer :: ret - integer :: id,index - double precision :: density, temperature, ionrate - - index=find_particle(id) - if(index.LT.0) then - ret=index + particles(index)%temperature = temperature + ret = 0 + end function set_particle_temperature + + function get_particle_ionrate(index_of_the_particle, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index return endif - - particles(index)%density=density - particles(index)%temperature=temperature - particles(index)%ionrate=ionrate - ret=0 - - end function - - function get_particle_state(id,density,temperature,ionrate) result(ret) - integer :: ret - integer :: id,index - double precision :: density, temperature, ionrate - - index=find_particle(id) - - if(index.LT.0) then - ret=index + ionrate = particles(index)%ionrate + ret = 0 + end function get_particle_ionrate + + function set_particle_ionrate(index_of_the_particle, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%ionrate = ionrate + ret = 0 + end function set_particle_ionrate + + function get_particle_abundance(index_of_the_particle, species_index, abundance) result(ret) + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(out) :: abundance + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + if (species_index .LT. 1 .OR. species_index .GT. krome_nmols) then + ret = -1 + return + endif + abundance = particles(index)%abundances(species_index) + ret = 0 + end function get_particle_abundance + + function set_particle_abundance(index_of_the_particle, species_index, abundance) result(ret) + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(in) :: abundance + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + if (species_index .LT. 1 .OR. species_index .GT. krome_nmols) then + ret = -1 + return + endif + particles(index)%abundances(species_index) = abundance + ret = 0 + end function set_particle_abundance + + function set_particle_abundances(index_of_the_particle, abundances, N) result(ret) + integer, intent(in) :: N + integer, intent(in) :: index_of_the_particle(N) + double precision, intent(in) :: abundances(N) + integer :: index, ret + index = find_particle(index_of_the_particle(1)) + if (index .LT. 0) then + ret = index + return + endif + if (N .NE. krome_nmols) then + ret = -2 + return + endif + particles(index)%abundances = abundances + ret = 0 + end function set_particle_abundances + + function get_particle_state(index_of_the_particle, number_density, temperature, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: number_density, temperature, ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + number_density = particles(index)%number_density + temperature = particles(index)%temperature + ionrate = particles(index)%ionrate + ret = 0 + end function get_particle_state + + function set_particle_state(index_of_the_particle, number_density, temperature, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: number_density, temperature, ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%number_density = number_density + particles(index)%temperature = temperature + particles(index)%ionrate = ionrate + ret = 0 + end function set_particle_state + + function add_particle(index_of_the_particle, number_density, temperature, ionrate) result(ret) + integer, intent(out) :: index_of_the_particle + double precision, intent(in) :: number_density, temperature, ionrate + double precision :: x(krome_nmols) + integer :: i, ret + + particles_searcheable = .FALSE. + i = nparticle + 1 + if (i .GT. NMAX) then + ret = -1 return endif - density=particles(index)%density - temperature=particles(index)%temperature - ionrate=particles(index)%ionrate - ret=0 + index_of_the_particle = new_id() + particles(i)%index_of_the_particle = index_of_the_particle + particles(i)%number_density = number_density + particles(i)%temperature = temperature + particles(i)%ionrate = ionrate + particles(i)%abundances = 1.d-40 - end function + if (number_density .GT. 0.d0) then + particles(i)%abundances(KROME_idx_H) = 1.d0 !H + particles(i)%abundances(KROME_idx_H2) = 1.d-6 !H2 + particles(i)%abundances(KROME_idx_Hj) = 1.d-4 !H+ + particles(i)%abundances(KROME_idx_He) = 0.0775d0 !He - function add_particle(id,density,temperature,ionrate) result(ret) - integer :: ret - integer :: i,id - double precision :: density, temperature,ionrate - double precision :: x(krome_nmols) - particles_searcheable=.FALSE. - id=new_id() - i=nparticle+1 + x = particles(i)%number_density * particles(i)%abundances - if(i.GT.NMAX) then - ret=-1 - return - endif - particles(i)%id=id - particles(i)%density=density - particles(i)%temperature=temperature - particles(i)%ionrate=ionrate - particles(i)%abundances=1.d-40 - - if(density.GT.0) then - particles(i)%abundances(KROME_idx_H) = 1. !H - particles(i)%abundances(KROME_idx_H2) = 1.d-6 !H2 - particles(i)%abundances(KROME_idx_Hj) = 1.d-4 !H+ - particles(i)%abundances(KROME_idx_He) = 0.0775d0 !He - - x=particles(i)%density*particles(i)%abundances - - call krome_scale_Z(x(:), 0.d0) ! scale to solar - - x(krome_idx_Cj) = x(krome_idx_C) !carbon is fully ionized - x(krome_idx_C) = 1d-40 - x(krome_idx_e) = krome_get_electrons(x(:)) - - particles(i)%abundances=x/particles(i)%density - endif + call krome_scale_Z(x(:), 0.d0) ! scale to solar - nparticle=nparticle+1 - ret=0 - end function + x(krome_idx_Cj) = x(krome_idx_C) !carbon is fully ionized + x(krome_idx_C) = 1d-40 + x(krome_idx_e) = krome_get_electrons(x(:)) - function remove_particle(id) result(ret) - integer :: ret - integer :: i,id - i=find_particle(id) - if(i.LE.0) then - ret=i - return - endif - if(particles(i)%density.LT.0) then - ret=-4 - return - endif - particles(i)%density=-1. - ret=0 - end function + particles(i)%abundances = x / particles(i)%number_density + endif + + nparticle = nparticle + 1 + ret = 0 + end function add_particle + + function remove_particle(index_of_the_particle) result(ret) + integer, intent(in) :: index_of_the_particle + integer :: i, ret + i = find_particle(index_of_the_particle) + if (i .LE. 0) then + ret = i + return + endif + if (particles(i)%number_density .LT. 0.d0) then + ret = -4 + return + endif + particles(i)%number_density = -1.d0 + ret = 0 + end function remove_particle function clean_particles(par) result(np) - integer :: left,right,np - type(particle_type), allocatable :: par(:) + type(particle_type), allocatable, intent(inout) :: par(:) type(particle_type) :: tmp - left=1 - if(.NOT.allocated(par)) then - np = 0 - return + integer :: left, right, np + left = 1 + if (.NOT. allocated(par)) then + np = 0 + return endif - right=size(par) - if(right.EQ.0) then - np=0 + right = size(par) + if (right .EQ. 0) then + np = 0 return - endif + endif do while(.TRUE.) - do while(par(left)%density.GT.0.AND.left.LT.right) - left=left+1 + do while(par(left)%number_density .GT. 0 .AND. left .LT. right) + left = left + 1 enddo - do while(par(right)%density.LE.0.AND.left.LT.right) - right=right-1 + do while(par(right)%number_density .LE. 0 .AND. left .LT. right) + right = right - 1 enddo - if(left.LT.right) then - tmp=par(left) - par(left)=par(right) - par(right)=tmp + if (left .LT. right) then + tmp = par(left) + par(left) = par(right) + par(right) = tmp else exit endif enddo - if(par(left)%density.GT.0) left=left+1 - np=left-1 -end function - -function find_particle(id_) result(index) - use hashMod - type(hash_type),save :: hash - integer id_,index - integer, save :: nbod=0 - - if(.NOT.particles_searcheable) then - nbod=nparticle - if(allocated(pid)) deallocate(pid) + if(par(left)%number_density .GT. 0) left = left + 1 + np = left - 1 +end function clean_particles + +function find_particle(index_of_the_particle) result(index) + use hashMod, only : hash_type, initHash, find + integer, intent(in) :: index_of_the_particle + integer :: index + type(hash_type), save :: hash + integer, save :: nbod = 0 + + if (.NOT. particles_searcheable) then + nbod = nparticle + if (allocated(pid)) deallocate(pid) allocate(pid(nbod)) - pid(1:nbod)=particles(1:nbod)%id - call initHash(nbod/2+1,nbod, pid,hash) - particles_searcheable=.TRUE. + pid(1:nbod) = particles(1:nbod)%index_of_the_particle + call initHash(nbod/2+1, nbod, pid, hash) + particles_searcheable = .TRUE. endif - - index=find(id_,pid,hash) - - if(index.LE.0) then - index=-1 + index = find(index_of_the_particle, pid, hash) + if (index .LE. 0) then + index = -1 return endif - if(index.GT.nbod) then - index=-2 + if (index .GT. nbod) then + index = -2 return endif - if(pid(index).NE.id_) then - index=-3 + if (pid(index) .NE. index_of_the_particle) then + index = -3 return endif - -end function +end function find_particle -subroutine extend_particles(buf,n) +subroutine extend_particles(buf, n) type(particle_type), allocatable, intent (inout) :: buf(:) type(particle_type), allocatable :: tmpbuf(:) - integer :: n,m + integer, intent(in) :: n + integer :: m - m=0 - if(allocated(buf)) then - m=min(n,size(buf)) + m = 0 + if (allocated(buf)) then + m = min(n, size(buf)) allocate(tmpbuf(m)) - tmpbuf(1:m)=buf(1:m) + tmpbuf(1:m) = buf(1:m) deallocate(buf) endif - + allocate(buf(n)) - if(m.GT.0 .and. allocated(tmpbuf)) then - buf(1:m)=tmpbuf(1:m) + if (m .GT. 0 .and. allocated(tmpbuf)) then + buf(1:m) = tmpbuf(1:m) deallocate(tmpbuf) - endif - -end subroutine + endif + +end subroutine extend_particles function new_id() integer new_id - tot_id=tot_id+1 - new_id=tot_id -end function + tot_id = tot_id + 1 + new_id = tot_id +end function new_id -end module +end module chem_mod diff --git a/src/amuse_krome/tests/test_krome.py b/src/amuse_krome/tests/test_krome.py index cb1e5c14c4..b51a735b43 100644 --- a/src/amuse_krome/tests/test_krome.py +++ b/src/amuse_krome/tests/test_krome.py @@ -1,33 +1,59 @@ -import os.path -import numpy +from amuse.datamodel import Particles from amuse.support.testing.amusetest import TestWithMPI - -from amuse_krome.interface import KromeInterface, Krome, solar_abundances from amuse.units import units -from amuse.datamodel import Particles +from amuse_krome.interface import KromeInterface, Krome, solar_abundances +import numpy as np -from amuse.io import read_set_from_file -# default_options={} default_options = dict(redirection="none") -# default_options=dict(debugger="gdb") class TestKromeInterface(TestWithMPI): - def test1(self): + def test_initialization(self): print("Test 1: initialization") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) self.assertEqual(0, instance.cleanup_code()) instance.stop() - def test2(self): - print("Test 1: add particle, get state") + def test_getters_and_setters(self): + print("Test 2: getters and setters") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + dens = 1.e5 + t = 500. + ion = 1.e-11 + id, err = instance.new_particle(dens, t, ion) + + new_dens = 2e5 + new_temp = 1000 + new_ionrate = 1e-12 + + instance.set_number_density(1, new_dens) + instance.set_temperature(1, new_temp) + instance.set_ionrate(1, new_ionrate) + + res = instance.get_number_density(1) + self.assertEquals(res['number_density'], new_dens) + res = instance.get_temperature(1) + self.assertEquals(res['temperature'], new_temp) + res = instance.get_ionrate(1) + self.assertEquals(res['ionrate'], new_ionrate) + + instance.stop() + + def test_add_1_particle_and_get_state(self): + print("Test 3: add particle, get state") + + instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -52,10 +78,11 @@ def test2(self): instance.stop() - def test3(self): - print("Test 1: add 2 particles, get state") + def test_add_2_particles_and_get_state(self): + print("Test 4: add 2 particles, get state") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -81,16 +108,17 @@ def test3(self): instance.stop() - def test4(self): - print("Test 1: add 100 particles, get state") + def test_add_100_particles_and_get_state(self): + print("Test 5: add 100 particles, get state") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) - dens = 1.e5*numpy.random.random(100) - t = 500.*numpy.random.random(100) - ion = 1.e-11*numpy.random.random(100) + dens = 1.e5*np.random.random(100) + t = 500.*np.random.random(100) + ion = 1.e-11*np.random.random(100) id, err = instance.new_particle(dens, t, ion) self.assertEqual(err, 0) @@ -110,34 +138,36 @@ def test4(self): instance.stop() - def test5(self): - print("Test 5: can we get species?") + def test_get_species(self): + print("Test 6: can we get species?") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() self.assertEqual(err, 0) self.assertTrue(last-first > 0) for i in range(first, last+1): - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) print(name) self.assertEqual(err, 0) - index, err = instance.get_index_of_species(name) + index, err = instance.get_species_index(name) self.assertEqual(i, index) instance.stop() - def test6(self): - print("Test 6: add 100 particles, remove particles") + def test_add_and_remove_particles(self): + print("Test 7: add 100 particles, remove particles") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) - dens = 1.e5*numpy.random.random(100) - t = 500.*numpy.random.random(100) - ion = 1.e-11*numpy.random.random(100) + dens = 1.e5*np.random.random(100) + t = 500.*np.random.random(100) + ion = 1.e-11*np.random.random(100) ids, err = instance.new_particle(dens, t, ion) self.assertEqual(err, 0) @@ -166,10 +196,11 @@ def test6(self): instance.stop() - def test7(self): - print("Test 1: add particle, set abundances") + def test_add_particle_and_set_abundances(self): + print("Test 8: add particle, set abundances") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -180,7 +211,7 @@ def test7(self): instance.commit_particles() - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertTrue((x >= 0.) & (x <= 1.)) @@ -190,20 +221,21 @@ def test7(self): for s in ["H", "HE", "C", "SI", "O"]: x = solar_abundances[s] - aid, err = instance.get_index_of_species(s) + aid, err = instance.get_species_index(s) instance.set_abundance(id, aid, x) for s in ["H", "HE", "C", "SI", "O"]: x = solar_abundances[s] - aid, err = instance.get_index_of_species(s) + aid, err = instance.get_species_index(s) xx, err = instance.get_abundance(id, aid) self.assertEqual(x, xx) self.assertEqual(err, 0) - def test8(self): - print("evolve test") + def test_evolve(self): + print("Test 9: evolve test") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -212,13 +244,13 @@ def test8(self): ion = 2.e-17 id, err = instance.new_particle(dens, t, ion) - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): err = instance.set_abundance(id, i, 1.e-40) for s in ["H", "HE", "C", "SI", "O"]: x = solar_abundances[s] - aid, err = instance.get_index_of_species(s) + aid, err = instance.get_species_index(s) instance.set_abundance(id, aid, x) instance.commit_particles() @@ -230,17 +262,18 @@ def test8(self): self.assertEqual(err, 0) self.assertEqual(time, 10000.*yr) - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertEqual(err, 0) - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) print(i, name, x) - def test9(self): - print("evolve test 2") + def test_evolve_ionized_initial_state(self): + print("Test 10: evolve test 2") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -249,24 +282,24 @@ def test9(self): ion = 2.e-17 id, err = instance.new_particle(dens, t, ion) - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): err = instance.set_abundance(id, i, 1.e-40) for s in ["H", "HE", "C", "SI", "O"]: x = solar_abundances[s] - aid, err = instance.get_index_of_species(s) + aid, err = instance.get_species_index(s) instance.set_abundance(id, aid, x) - aid, err = instance.get_index_of_species("C") + aid, err = instance.get_species_index("C") instance.set_abundance(id, aid, 1.e-40) - aid, err = instance.get_index_of_species("C+") + aid, err = instance.get_species_index("C+") instance.set_abundance(id, aid, solar_abundances["C"]) - aid, err = instance.get_index_of_species("H2") + aid, err = instance.get_species_index("H2") instance.set_abundance(id, aid, 1.e-6) - aid, err = instance.get_index_of_species("H+") + aid, err = instance.get_species_index("H+") instance.set_abundance(id, aid, 1.e-4) instance.commit_particles() @@ -278,17 +311,18 @@ def test9(self): self.assertEqual(err, 0) self.assertEqual(time, 10000.*yr) - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertEqual(err, 0) - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) print(i, name, x) - def test10(self): - print("check initialization of abundances") + def test_abundance_initialization(self): + print("Test 11: check initialization of abundances") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -302,18 +336,19 @@ def test10(self): "C+": 0.000269180975425, "SI": 3.2362683404e-05, "O": 0.000489828841345} - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertEqual(err, 0) - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) if name in abundances: self.assertAlmostEqual(x, abundances[name], 12) - def test11(self): - print("evolve test, comparison") + def test_evolve_comparison(self): + print("Test 12: evolve test, comparison") instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) + assert instance is not None self.assertEqual(0, instance.initialize_code()) self.assertEqual(0, instance.commit_parameters()) @@ -324,11 +359,11 @@ def test11(self): instance.evolve_model(1.e10) result1 = {} - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertEqual(err, 0) - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) result1[name] = x instance = self.new_instance_of_an_optional_code(KromeInterface, **default_options) @@ -344,11 +379,11 @@ def test11(self): instance.evolve_model(1.e10) result2 = {} - first, last, err = instance.get_firstlast_abundance() + first, last, err = instance.get_firstlast_species_index() for i in range(first, last+1): x, err = instance.get_abundance(id, i) self.assertEqual(err, 0) - name, err = instance.get_name_of_species(i) + name, err = instance.get_species_name(i) result2[name] = x for x in result1: @@ -358,15 +393,18 @@ def test11(self): class TestKrome(TestWithMPI): def makeparts(self, N): parts = Particles(N) - numpy.random.seed(1234567) - parts.number_density = (numpy.random.random(N)*1.e5+1.e5) | units.cm**-3 - parts.temperature = (numpy.random.random(N)*500+100) | units.K - parts.ionrate = (numpy.random.random(N)*1.e-11+1.e-17) | units.s**-1 + np.random.seed(1234567) + parts.number_density = (np.random.random(N)*1.e5+1.e5) | units.cm**-3 + parts.temperature = (np.random.random(N)*500+100) | units.K + parts.ionrate = (np.random.random(N)*1.e-11+1.e-17) | units.s**-1 + parts.index = np.arange(N) return parts - def test0(self): - print("test1: basic startup and flow") + def test_startup(self): + print("Test 1: basic startup and flow") instance = self.new_instance_of_an_optional_code(Krome) + assert instance is not None + self.assertEqual(instance.get_name_of_current_state(), 'UNINITIALIZED') instance.initialize_code() self.assertEqual(instance.get_name_of_current_state(), 'INITIALIZED') @@ -378,10 +416,11 @@ def test0(self): instance.cleanup_code() instance.stop() - def test1(self): - print("test1: adding particles") + def test_add_particles(self): + print("Test 2: adding particles") instance = self.new_instance_of_an_optional_code(Krome) + assert instance is not None parts = self.makeparts(5) @@ -398,35 +437,36 @@ def test1(self): self.assertAlmostRelativeEquals(parts.ionrate, part2.ionrate, 12) for p in part2: - i = instance.species["E"] + i = instance.species["E"] - 1 self.assertAlmostEqual(p.abundances[i], 0.000369180975425) - i = instance.species["H+"] + i = instance.species["H+"] - 1 self.assertAlmostEqual(p.abundances[i], 0.0001) - i = instance.species["HE"] + i = instance.species["HE"] - 1 self.assertAlmostEqual(p.abundances[i], 0.0775) - i = instance.species["C+"] + i = instance.species["C+"] - 1 self.assertAlmostEqual(p.abundances[i], 0.000269180975425) - i = instance.species["SI"] + i = instance.species["SI"] - 1 self.assertAlmostEqual(p.abundances[i], 3.2362683404e-05) - i = instance.species["O"] + i = instance.species["O"] - 1 self.assertAlmostEqual(p.abundances[i], 0.000489828841345) instance.cleanup_code() instance.stop() - def test2(self): - print("test2: adding particles w abund.") + def test_add_particles_with_abundances(self): + print("Test 3: adding particles with abundances") instance = self.new_instance_of_an_optional_code(Krome) + assert instance is not None parts = self.makeparts(5) N = len(instance.species) - parts.abundances = numpy.zeros((5, N)) + parts.abundances = np.zeros((5, N)) for i in range(5): - parts[i].abundances = (numpy.array(range(N))+1)/(N+1.) + parts[i].abundances = (np.array(range(N))+1)/(N+1.) instance.particles.add_particles(parts) @@ -445,10 +485,11 @@ def test2(self): instance.cleanup_code() instance.stop() - def test3(self): - print("test3: evolve test") + def test_evolve(self): + print("Test 4: evolve test") instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None parts = Particles(1) parts.number_density = 1.e5 | units.cm**-3 @@ -457,7 +498,7 @@ def test3(self): Ns = len(instance.species) - parts.abundances = numpy.zeros((1, Ns)) + parts.abundances = np.zeros((1, Ns)) instance.particles.add_particles(parts) @@ -465,18 +506,19 @@ def test3(self): print(instance.particles.abundances) - f = 2*instance.particles[0].abundances[instance.species["H2"]] + f = 2*instance.particles[0].abundances[instance.species["H2"] - 1] self.assertTrue(f > 0.95) # not much of a test.. - # ~ for x,i in instance.species.items(): - # ~ print x, instance.particles[0].abundances[i] + + self.assertAlmostRelativeEquals(instance.model_time, 1e6 | units.yr) instance.cleanup_code() instance.stop() - def test4(self): - print("test4: evolve test (10 part)") + def test_10_particles_evolve(self): + print("Test 5: evolve test (10 part)") instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None parts = Particles(10) parts.number_density = 1.e5 | units.cm**-3 @@ -485,16 +527,205 @@ def test4(self): Ns = len(instance.species) - parts.abundances = numpy.zeros((10, Ns)) + parts.abundances = np.zeros((10, Ns)) instance.particles.add_particles(parts) instance.evolve_model(1. | units.Myr) - f = 2*instance.particles[0].abundances[instance.species["H2"]] + f = 2*instance.particles[0].abundances[instance.species["H2"] - 1] self.assertTrue(f > 0.95) # not much of a test.. - # ~ for x,i in instance.species.items(): - # ~ print x, instance.particles[0].abundances[i] + + instance.cleanup_code() + instance.stop() + + def test_delete_particles_and_abundances(self): + print("Test 6: Delete particles") + + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + N_particles = 10 + parts = Particles(N_particles) + parts.number_density = np.random.rand(N_particles)*1.e5 | units.cm**-3 + parts.temperature = np.random.rand(N_particles)*50 | units.K + parts.ionrate = np.random.rand(N_particles)*2.e-17 | units.s**-1 + + instance.particles.add_particles(parts) + instance.commit_particles() + + instance.evolve_model(100 | units.yr) + + N_species = len(instance.species) + abundances = instance.particles.abundances + self.assertEquals(abundances.shape, (N_particles, N_species)) + self.assertEquals(instance.get_number_of_particles(), N_particles) + + instance.particles.remove_particle(parts[0]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-1) + self.assertEquals(instance.particles.abundances.shape, (N_particles-1, N_species)) + self.assertEquals(instance.particles.abundances.shape, abundances[1:, :].shape) + self.assertEquals(instance.particles.abundances, abundances[1:, :]) + + instance.particles.remove_particle(parts[1:5]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-5) + self.assertEquals(instance.particles.abundances.shape, (N_particles-5, N_species)) + self.assertEquals(instance.particles.abundances, abundances[5:, :]) + + instance.particles.remove_particles(parts[5:]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), 0) + + instance.stop() + + def test_species_index(self): + print("Test 7: test querying species") + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + species = instance.species + for name, index in species.items(): + self.assertEquals( + instance.species[name], instance.get_species_index(name) + ) + + self.assertEquals( + name, instance.get_species_name(index) + ) + + first, last = instance.get_firstlast_species_index() + print(first, last) + # boundary check 1: first and last index round-trip correctly + for i in (first, last): + print(i) + name = instance.get_species_name(i) + idx = instance.get_species_index(name) + assert idx == i, f"boundary mismatch at i={i}: name={name}, got idx={idx}" + + # boundary check 2: full round-trip over every index, not just species dict membership + for i in range(first, last + 1): + print(i) + name = instance.get_species_name(i) + idx = instance.get_species_index(name) + assert idx == i, f"mismatch at i={i}: name={name!r}, idx={idx}" + + instance.cleanup_code() + instance.stop() + + def test_get_abundance(self): + print("Test 8: get_abundance") + + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + cloud = self.makeparts(100) + instance.particles.add_particles(cloud) + + reference_abundances = { + 'H': 0.76875095999999998, + 'H2': 0.0023031866999999998, + 'H+': 5.8058537999999997e-09, + 'HE': 0.23894584999999999, + } + + for p in cloud.index: + for species, value in reference_abundances.items(): + instance.set_abundance(p+1, instance.species[species], value) + + instance.commit_particles() + + for species, expected in reference_abundances.items(): + result = instance.get_abundance(1, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected, 7) + + instance.cleanup_code() + instance.stop() + + def test_set_abundance(self): + print("Test 9: set_abundance") + + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + cloud = self.makeparts(100) + instance.particles.add_particles(cloud) + + instance.set_abundance(1, instance.species['H2'], 0.0023031866999999998) + instance.commit_particles() + + result = instance.get_abundance(1, instance.species['H2']) + self.assertEquals(result, 0.0023031866999999998) + + instance.cleanup_code() + instance.stop() + + def test_set_abundances(self): + print("Test 10: set_abundances from array") + + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + cloud = self.makeparts(10) + instance.particles.add_particles(cloud) + + n_species = len(instance.species) + abundances = np.zeros(n_species) + abundances[instance.species['H'] - 1] = 0.76875095999999998 + abundances[instance.species['H2'] - 1] = 0.0023031866999999998 + abundances[instance.species['H+'] - 1] = 5.8058537999999997e-09 + abundances[instance.species['HE'] - 1] = 0.23894584999999999 + + instance.set_abundances(1, abundances) + instance.set_abundances(2, abundances*2) + instance.commit_particles() + + for species, expected in [ + ('H', 0.76875095999999998), + ('H2', 0.0023031866999999998), + ('H+', 5.8058537999999997e-09), + ('HE', 0.23894584999999999), + ]: + result = instance.get_abundance(1, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected, 7) + result = instance.get_abundance(2, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected*2, 7) + + instance.cleanup_code() + instance.stop() + + def test_get_abundances_by_name(self): + print("Test 11: get_abundances_by_name") + + instance = self.new_instance_of_an_optional_code(Krome, **default_options) + assert instance is not None + + cloud = self.makeparts(10) + instance.particles.add_particles(cloud) + + reference_abundances = { + 'H': 0.76875095999999998, + 'H2': 0.0023031866999999998, + 'H+': 5.8058537999999997e-09, + 'HE': 0.23894584999999999, + } + + for p in cloud.index: + for species, value in reference_abundances.items(): + instance.set_abundance(p+1, instance.species[species], value) + + instance.commit_particles() + + # single-name input + result_single = instance.get_abundances_by_name(1, 'H') + self.assertAlmostRelativeEquals(result_single[0], reference_abundances['H'], 7) + + # sequence-of-names input, order must be preserved + names = ['H', 'H2', 'H+', 'HE'] + result_seq = instance.get_abundances_by_name(1, names) + expected_seq = np.array([reference_abundances[n] for n in names]) + self.assertAlmostRelativeEquals(result_seq, expected_seq, 7) instance.cleanup_code() instance.stop() diff --git a/src/amuse_kromesph/Makefile b/src/amuse_kromesph/Makefile new file mode 100644 index 0000000000..de84d0e261 --- /dev/null +++ b/src/amuse_kromesph/Makefile @@ -0,0 +1,80 @@ +ifneq (,$(filter-out clean distclean, $(MAKECMDGOALS))) +include support/config.mk +endif + + +# Detecting dependencies +support/config.mk: + cd support && ./configure + + +# Downloading the code +VERSION = 6a762de58a763026e708521ca2b4d68f9a90f669 +SHORT_VERSION = $(shell echo $(VERSION) | cut -c 1-12) + +krome.tar.gz: + $(DOWNLOAD) https://bitbucket.org/tgrassi/krome/get/$(VERSION).tar.gz >$@ + +src/krome: krome.tar.gz + tar xf $< + mv tgrassi-krome-$(SHORT_VERSION) src/krome + + +# Building the code into a static library +DEPFLAGS += $(FORSOCKETS_CFLAGS) +FCFLAGS += $(DEPFLAGS) -Isrc -Isrc/krome/build + +LDLIBS += $(FORSOCKETS_LIBS) + +CODELIB = src/libchem.a + +.PHONY: $(CODELIB) +$(CODELIB): | src/krome + $(MAKE) -C src libchem.a FC="$(FC)" + + +# Building the workers +kromesph_worker.f90: interface.py + amusifier --type=f90 interface.py KromeSphInterface -o $@ + +kromesph_worker.o: kromesph_worker.f90 + $(MPIFC) -c -o $@ $(FCFLAGS) $< + +kromesph_worker: interface.o kromesph_worker.o $(CODELIB) + $(MPIFC) -o $@ $(LDFLAGS) $^ $(LDLIBS) + +%.o: %.f90 $(CODELIB) + $(MPIFC) -o $@ -c $(FCFLAGS) $< + + +# Which packages contain which workers? +amuse-kromesph_contains: kromesph_worker + + +# Building and installing packages +develop-%: %_contains + support/shared/uninstall.sh $* + python -m pip install -e packages/$* + +install-%: %_contains + support/shared/uninstall.sh $* + python -m pip install packages/$* + +package-%: %_contains + python3 -m pip install -vv --no-cache-dir --no-deps --no-build-isolation --prefix ${PREFIX} packages/$* + +test-%: + cd packages/$* && pytest + + +# Cleaning up +.PHONY: clean +clean: + $(MAKE) -C src clean + rm -rf *.o *.mod *worker* + +.PHONY: distclean +distclean: clean + $(MAKE) -C src distclean + rm -f support/config.mk support/config.log support/config.status + rm -rf support/autom4te.cache diff --git a/src/amuse_kromesph/__init__.py b/src/amuse_kromesph/__init__.py new file mode 100644 index 0000000000..5859723375 --- /dev/null +++ b/src/amuse_kromesph/__init__.py @@ -0,0 +1 @@ +from amuse_kromesph.interface import KromeSph diff --git a/src/amuse_kromesph/interface.f90 b/src/amuse_kromesph/interface.f90 new file mode 100644 index 0000000000..4e1ed0dd6a --- /dev/null +++ b/src/amuse_kromesph/interface.f90 @@ -0,0 +1,264 @@ +function initialize_code() result(ret) + use chem_mod, only : chem_initialize + implicit none + integer :: ret + ret = chem_initialize() +end function initialize_code + +function cleanup_code() result(ret) + use chem_mod, only : chem_end + implicit none + integer :: ret + ret = chem_end() +end function cleanup_code + +function commit_parameters() result(ret) + use chem_mod, only : chem_commit_parameters + implicit none + integer :: ret + ret = chem_commit_parameters() +end function commit_parameters + +function recommit_parameters() result(ret) + use chem_mod, only : chem_commit_parameters + implicit none + integer :: ret + ret = chem_commit_parameters() +end function recommit_parameters + +function commit_particles() result(ret) + use chem_mod, only : chem_commit_particles + implicit none + integer :: ret + ret = chem_commit_particles() +end function commit_particles + +function recommit_particles() result(ret) + use chem_mod, only : chem_commit_particles + implicit none + integer :: ret + ret = chem_commit_particles() +end function recommit_particles + +function evolve_model(time) result(ret) + use chem_mod, only : evolve_chem_model + implicit none + double precision, intent(in) :: time + integer :: ret + ret = evolve_chem_model(time) +end function evolve_model + +function new_particle(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + use chem_mod, only : add_particle + implicit none + integer, intent(out) :: index_of_the_particle + double precision, intent(in) :: rho, u, gamma, mu, ionrate + integer :: ret + ret = add_particle(index_of_the_particle, rho, u, gamma, mu, ionrate) +end function new_particle + +function delete_particle(index_of_the_particle) result(ret) + use chem_mod, only : remove_particle + implicit none + integer, intent(in) :: index_of_the_particle + integer :: ret + ret = remove_particle(index_of_the_particle) +end function delete_particle + +function get_state(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + use chem_mod, only : get_particle_state + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: rho, u, gamma, mu, ionrate + integer :: ret + ret = get_particle_state(index_of_the_particle, rho, u, gamma, mu, ionrate) +end function get_state + +function set_state(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + use chem_mod, only : set_particle_state + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: rho, u, gamma, mu, ionrate + integer :: ret + ret = set_particle_state(index_of_the_particle, rho, u, gamma, mu, ionrate) +end function set_state + +function get_density(index_of_the_particle, rho) result(ret) + use chem_mod, only : get_particle_rho + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: rho + integer :: ret + ret = get_particle_rho(index_of_the_particle, rho) +end function get_density + +function set_density(index_of_the_particle, rho) result(ret) + use chem_mod, only : set_particle_rho + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: rho + integer :: ret + ret = set_particle_rho(index_of_the_particle, rho) +end function set_density + +function get_internal_energy(index_of_the_particle, u) result(ret) + use chem_mod, only : get_particle_internal_energy + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: u + integer :: ret + ret = get_particle_internal_energy(index_of_the_particle, u) +end function get_internal_energy + +function set_internal_energy(index_of_the_particle, u) result(ret) + use chem_mod, only : set_particle_internal_energy + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: u + integer :: ret + ret = set_particle_internal_energy(index_of_the_particle, u) +end function set_internal_energy + +function get_gamma(index_of_the_particle, gamma) result(ret) + use chem_mod, only : get_particle_gamma + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: gamma + integer :: ret + ret = get_particle_gamma(index_of_the_particle, gamma) +end function get_gamma + +function set_gamma(index_of_the_particle, gamma) result(ret) + use chem_mod, only : set_particle_gamma + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: gamma + integer :: ret + ret = set_particle_gamma(index_of_the_particle, gamma) +end function set_gamma + +function get_mu(index_of_the_particle, mu) result(ret) + use chem_mod, only : get_particle_mu + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: mu + integer :: ret + ret = get_particle_mu(index_of_the_particle, mu) +end function get_mu + +function set_mu(index_of_the_particle, mu) result(ret) + use chem_mod, only : set_particle_mu + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: mu + integer :: ret + ret = set_particle_mu(index_of_the_particle, mu) +end function set_mu + +function get_ionrate(index_of_the_particle, ionrate) result(ret) + use chem_mod, only : get_particle_ionrate + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: ionrate + integer :: ret + ret = get_particle_ionrate(index_of_the_particle, ionrate) +end function get_ionrate + +function set_ionrate(index_of_the_particle, ionrate) result(ret) + use chem_mod, only : set_particle_ionrate + implicit none + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: ionrate + integer :: ret + ret = set_particle_ionrate(index_of_the_particle, ionrate) +end function set_ionrate + +function get_abundance(index_of_the_particle, species_index, abundance) result(ret) + use chem_mod, only : get_particle_abundance + implicit none + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(out) :: abundance + integer :: ret + ret = get_particle_abundance(index_of_the_particle, species_index, abundance) +end function get_abundance + +function set_abundance(index_of_the_particle, species_index, abundance) result(ret) + use chem_mod, only : set_particle_abundance + implicit none + integer, intent(in) :: index_of_the_particle, species_index + double precision, intent(in) :: abundance + integer :: ret + ret = set_particle_abundance(index_of_the_particle, species_index, abundance) +end function set_abundance + +function set_abundances(index_of_the_particle, abundances, N) result(ret) + use chem_mod, only : set_particle_abundances + implicit none + integer, intent(in) :: N + integer, intent(in) :: index_of_the_particle(N) + double precision, intent(in) :: abundances(N) + integer :: ret + ret = set_particle_abundances(index_of_the_particle, abundances, N) +end function set_abundances + +function get_firstlast_species_index(first, last) result(ret) + use chem_mod, only : krome_nmols + implicit none + integer, intent(out) :: first, last + integer :: ret + first = 1 + last = krome_nmols ! this is the last species defined in amuse_helpers.f90 + ret = 0 +end function get_firstlast_species_index + +function get_species_index(name, species_index) result(ret) + use chem_mod, only : krome_get_index + implicit none + character(len=16), intent(in) :: name + integer, intent(out) :: species_index + integer :: ret + species_index = krome_get_index(name) + ret = 0 +end function get_species_index + +function get_species_name(species_index, name) result(ret) + use chem_mod, only : krome_get_names, krome_nmols + implicit none + integer, intent(in) :: species_index + character(len=16), intent(out) :: name + integer :: ret + character(len=16) :: names(krome_nmols) + if (species_index .LT. 1 .OR. species_index .GT. krome_nmols) then + ret = -1 + return + endif + names = krome_get_names() + name = names(species_index) + ret = 0 +end function get_species_name + +function get_time(time) result(ret) + use chem_mod, only : chem_model_time + implicit none + double precision, intent(out) :: time + integer :: ret + ret = chem_model_time(time) +end function get_time + +function get_number_of_particles(number_of_particles) result(ret) + use chem_mod, only : nparticle + implicit none + integer, intent(out) :: number_of_particles + integer :: ret + number_of_particles = nparticle + ret = 0 +end function get_number_of_particles + +function set_amu_in_g(amu_in_g) result(ret) + use krome_constants_amuse, only : amu_2_g + implicit none + double precision, intent(in) :: amu_in_g + integer :: ret + amu_2_g = amu_in_g + ret = 0 +end function set_amu_in_g diff --git a/src/amuse_kromesph/interface.py b/src/amuse_kromesph/interface.py new file mode 100644 index 0000000000..94649d49e5 --- /dev/null +++ b/src/amuse_kromesph/interface.py @@ -0,0 +1,344 @@ +from amuse.community.interface.chem import ( + ChemDensityInternalEnergy, + ChemDensityInternalEnergyInterface, + ChemicalEvolution, + ChemicalEvolutionInterface, +) +from amuse.rfi.core import ( + CodeInterface, + LegacyFunctionSpecification, + legacy_function, + remote_function +) +from amuse.support.literature import LiteratureReferencesMixIn +from amuse.units import units as u + + +# (Grevesse & Sauval, 1998, Space Sci. Rev. 85, 161) +solar_abundances= dict( + H = 1.0, HE = 0.085, + C = 3.31e-4, N = 8.3e-5, O = 6.76e-4, + Ne = 1.2e-4, SI = 3.55e-5, Fe = 3.2e-5 +) + + +class KromeSphInterface( + CodeInterface, + ChemicalEvolutionInterface, + ChemDensityInternalEnergyInterface, + LiteratureReferencesMixIn +): + """ + KROME - a package to embed chemistry in astrophysical simulations + + .. [#] Grassi, T.; Bovino, S.; Schleicher, D. R. G.; Prieto, J.; Seifried, D.; Simoncini, E.; Gianturco, F. A., MNRAS, 439, 3, p.2386-2419 [2014MNRAS.439.2386G] + """ + + def __init__(self, **options): + CodeInterface.__init__(self, name_of_the_worker = self.name_of_the_worker(), **options) + LiteratureReferencesMixIn.__init__(self) + + def name_of_the_worker(self): + return 'kromesph_worker' + + @legacy_function + def new_particle(): + """ + Add a new particle to Krome. + + Parameters + ---------- + rho : float + Density of the particle in units of g*cm**-3. + u : float + Internal energy of the particle in units of cm**2*s**-2. + gamma : float + Adiabatic index of the particle. Dimensionless. + mu : float + Mean molecular weight of the particle in units of g. + ionrate : float + Ionization rate of the particle in units of s**-1. + + Returns + ------- + index_of_the_particle : int + Id of the newly created particle, returned by Krome. + int : + 0 on success. + """ + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter( + 'index_of_the_particle', dtype='i', direction=function.OUT + ) + for x in ['rho', 'u', 'gamma', 'mu', 'ionrate']: + function.addParameter(x, dtype='d', direction=function.IN) + function.result_type = 'i' + return function + + @legacy_function + def get_state(): + """ + Retrieve the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + + Returns + ------- + rho : float + Density retrieved from the particle, in units of g*cm**-3. + u : float + Internal energy retrieved from the particle in units of cm**2*s**-2. + gamma : float + Adiabatic index retrieved from the particle. Dimensionless. + mu : float + Mean molecular weight retrieved from the particle, in units of g. + ionrate : float + Ionization rate retrieved from the particle, in units of s**-1. + int : + 0 on success. + """ + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter( + 'index_of_the_particle', dtype='i', direction=function.IN + ) + for x in ['rho', 'u', 'gamma', 'mu', 'ionrate']: + function.addParameter(x, dtype='d', direction=function.OUT) + function.result_type = 'i' + return function + + @legacy_function + def set_state(): + """ + Set the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + rho : float + Density to set for the particle, in units of g*cm**-3. + u : float + Internal energy to set for the particle, in units of cm**2*s**-2. + gamma : float + Adiabatic index to set for the particle. Dimensionless. + mu : float + Mean molecular weight to set for the particle, in units of g. + ionrate : float + Ionization rate to set for the particle, in units of s**-1. + + Returns + ------- + int : + 0 on success. + """ + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter( + 'index_of_the_particle', dtype='i', direction=function.IN + ) + for x in ['rho', 'u', 'gamma', 'mu', 'ionrate']: + function.addParameter(x, dtype='d', direction=function.IN) + function.result_type = 'i' + return function + + @remote_function(can_handle_array=True) + def get_gamma(index_of_the_particle='i'): + """ + Retrieve the adiabatic index of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + + Returns + ------- + gamma : float + Adiabatic index retrieved from the particle. Dimensionless. + int : + 0 on success. + """ + returns (gamma='d') + + @remote_function(can_handle_array=True) + def set_gamma(index_of_the_particle='i', gamma='d'): + """ + Set the adiabatic index of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + gamma : float + Adiabatic index to set for the particle. Dimensionless. + + Returns + ------- + int : + 0 on success. + """ + returns () + + @remote_function(can_handle_array=True) + def get_mu(index_of_the_particle='i'): + """ + Retrieve the mean molecular weigth of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + + Returns + ------- + mu : float + Mean molecular weight retrieved from the particle, in units of g. + int : + 0 on success. + """ + returns (mu='d') + + @remote_function(can_handle_array=True) + def set_mu(index_of_the_particle='i', mu='d'): + """ + Set the mean molecular weigth of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle as returned by `new_particle`. + mu : float + Mean molecular weight retrieved from the particle, in units of g. + + Returns + ------- + int : + 0 on success. + """ + returns () + + @remote_function + def set_amu_in_g(amu_in_g='d'): + """ + Set the value of the atomic mass unit in grams. + This function is used internally by AMUSE to + send the value of amu in grams to Krome at runtime. + + Parameters + ---------- + amu_in_g : float + Value of atomic mass unit in grams. + """ + returns () + + +class KromeSph(ChemicalEvolution, ChemDensityInternalEnergy): + """ + Krome is a package to embed chemistry in astrophysical simulations. + + KromeSph is an interface for an alternate compilation of Krome + more suitable for coupled hydrodynamic simulations. + """ + def __init__(self, unit_converter=None, **options): + + if unit_converter is not None: + raise Exception('Krome uses predefined units') + + ChemicalEvolution.__init__(self, KromeSphInterface(**options)) + + first, last = self.get_firstlast_species_index() + self.species = dict() + for i in range(first, last+1): + self.species[self.get_species_name(i)] = i + + amu_in_g = (1 | u.amu).value_in(u.g) + self.set_amu_in_g(amu_in_g) + + def define_properties(self, handler): + handler.add_property('get_time', public_name='model_time') + + def define_methods(self, handler): + ChemicalEvolution.define_methods(self, handler) + ChemDensityInternalEnergy.define_methods(self, handler) + handler.add_method( + 'evolve_model', (u.s,), (handler.ERROR_CODE,) + ) + + handler.add_method( + 'new_particle', + ( + u.g * u.cm**-3, + u.cm**2 * u.s**-2, + handler.NO_UNIT, + u.g, + u.s**-1, + ), + (handler.INDEX, handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_state', + (handler.INDEX,), + ( + u.g * u.cm**-3, + u.cm**2 * u.s**-2, + handler.NO_UNIT, + u.g, + u.s**-1, + handler.ERROR_CODE, + ) + ) + + handler.add_method( + 'set_state', + ( + handler.INDEX, + u.g * u.cm**-3, + u.cm**2 * u.s**-2, + handler.NO_UNIT, + u.g, + u.s**-1, + ), + (handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_gamma', + (handler.INDEX,), + (handler.NO_UNIT, handler.ERROR_CODE,) + ) + + handler.add_method( + 'set_gamma', + (handler.INDEX, handler.NO_UNIT,), + (handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_mu', + (handler.INDEX,), + (u.g, handler.ERROR_CODE,) + ) + + handler.add_method( + 'set_mu', + (handler.INDEX, u.g,), + (handler.ERROR_CODE,) + ) + + handler.add_method( + 'get_time', (), (u.s, handler.ERROR_CODE,) + ) + + def define_particle_sets(self, handler): + ChemicalEvolution.define_particle_sets(self, handler) + ChemDensityInternalEnergy.define_particle_sets(self, handler) + handler.add_getter('particles', 'get_gamma') + handler.add_setter('particles', 'set_gamma') + handler.add_getter('particles', 'get_mu') + handler.add_setter('particles', 'set_mu') diff --git a/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE.amuse_deps b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE.amuse_deps new file mode 100644 index 0000000000..e5ab274ccd --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE.amuse_deps @@ -0,0 +1 @@ +c c++ fortran java python cmake install download mpi openmp cuda opencl x11 opengl blas lapack gsl gmp mpfr fftw hdf5 netcdf4 diff --git a/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/kromesph b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/kromesph new file mode 120000 index 0000000000..c25bddb6dd --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/kromesph @@ -0,0 +1 @@ +../.. \ No newline at end of file diff --git a/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/pyproject.toml b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/pyproject.toml new file mode 100644 index 0000000000..c51fc37702 --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph-PACKAGE/pyproject.toml @@ -0,0 +1,40 @@ +[project] +name = "amuse-kromesph-PACKAGE" +dynamic = ["version"] +requires-python = ">=3.7" +dependencies = [ + "amuse-framework==2025.9.1.dev109+gf313311c0.d20260707", + "amuse-kromesph" +] + +[build-system] +requires = ["hatchling", "versioningit"] +build-backend = "hatchling.build" + +[tool.hatch.version] +source = "versioningit" + +[tool.versioningit.next-version] +method = "smallest" + +[tool.versioningit.format] +distance = "{next_version}.dev{distance}+{vcs}{rev}" +dirty = "{base_version}+d{build_date:%Y%m%d}" +distance-dirty = "{next_version}.dev{distance}+{vcs}{rev}.d{build_date:%Y%m%d}" + +[tool.versioningit.vcs] +method = { module = "version_helper", value = "get_amuse_version", module-dir = "amuse_kromesph/support/shared" } + +[tool.hatch.build] +skip-excluded-dirs = true + +[tool.hatch.build.targets.wheel] +include = ["amuse_kromesph"] +exclude = ["amuse_kromesph/*"] +artifacts = ["amuse_kromesph/kromesph_PACKAGE_worker"] + +[tool.pytest.ini_options] +pythonpath = ["amuse_kromesph/tests/", "../../../../../tests"] + +testpaths = ["amuse_kromesph/tests"] + diff --git a/src/amuse_kromesph/packages/amuse-kromesph.amuse_deps b/src/amuse_kromesph/packages/amuse-kromesph.amuse_deps new file mode 100644 index 0000000000..c1c23dbd8f --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph.amuse_deps @@ -0,0 +1 @@ +fortran python download mpi diff --git a/src/amuse_kromesph/packages/amuse-kromesph/amuse_kromesph b/src/amuse_kromesph/packages/amuse-kromesph/amuse_kromesph new file mode 120000 index 0000000000..c25bddb6dd --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph/amuse_kromesph @@ -0,0 +1 @@ +../.. \ No newline at end of file diff --git a/src/amuse_kromesph/packages/amuse-kromesph/pyproject.toml b/src/amuse_kromesph/packages/amuse-kromesph/pyproject.toml new file mode 100644 index 0000000000..ea3dabf9a1 --- /dev/null +++ b/src/amuse_kromesph/packages/amuse-kromesph/pyproject.toml @@ -0,0 +1,46 @@ +[project] +name = "amuse-kromesph" +version = "0.0.1" +# use the line below instead of the version above if this code is inside the AMUSE +# repository +# dynamic = ["version"] +requires-python = ">=3.7" +dependencies = [ + "amuse-framework" +] + +[build-system] +requires = ["hatchling", "versioningit"] +build-backend = "hatchling.build" + +[tool.hatch.version] +source = "versioningit" + +[tool.versioningit.next-version] +method = "smallest" + +[tool.versioningit.format] +distance = "{next_version}.dev{distance}+{vcs}{rev}" +dirty = "{base_version}+d{build_date:%Y%m%d}" +distance-dirty = "{next_version}.dev{distance}+{vcs}{rev}.d{build_date:%Y%m%d}" + +[tool.versioningit.vcs] +method = { module = "version_helper", value = "get_amuse_version", module-dir = "amuse_kromesph/support/shared" } + +[tool.hatch.build] +skip-excluded-dirs = true + +[tool.hatch.build.targets.wheel] +include = ["amuse_kromesph/**/*.py"] +exclude = [ + "amuse_kromesph/packages", + "amuse_kromesph/support", + "amuse_kromesph/src", + "amuse_kromesph/tests" + ] +artifacts = ["amuse_kromesph/kromesph_worker"] + +[tool.pytest.ini_options] +pythonpath = ["amuse_kromesph/tests/"] + +testpaths = ["amuse_kromesph/tests"] diff --git a/src/amuse_kromesph/src/Makefile b/src/amuse_kromesph/src/Makefile new file mode 100644 index 0000000000..9a036f0560 --- /dev/null +++ b/src/amuse_kromesph/src/Makefile @@ -0,0 +1,38 @@ +OBJECTS = compact_chem_optimized.o +FC ?= gfortran +FFLAGS ?= -O2 + +LIBFILES= $(OBJECTS) hash.o krome_constants_amuse.o amuse_helpers.o + +# krome makefile has changed to be ifort, with targets for gfortran +#~ KROME_OPTIONS=-unsafe -iRHS -n networks/react_COthin -compiler $(FC) -useN -clean +# KROME_OPTIONS=-unsafe -iRHS -n networks/react_COthin -useN -clean -noVerbatimFile +KROME_OPTIONS=-unsafe -iRHS -n networks/react_primordial_UV -cooling=H2,COMPTON,CONT,ATOMIC,CHEM -heating=CHEM -shielding=WG11 -H2opacity=RIPAMONTI -gamma=FULL -useX -clean -noVerbatimFile +# -compact + +FFLAGS += -ffree-line-length-none -fallow-argument-mismatch + +amuse_interface: libchem.a + +test: + +# note the hard change of fortran compiler and options +krome/build/krome: + cd krome && ./krome $(KROME_OPTIONS) + $(MAKE) -C krome/build/ fc="$(FC)" switch="$(FFLAGS)" + +libchem.a: krome/build/krome hash.o krome_constants_amuse.o amuse_helpers.o + $(AR) crs $@ $(filter-out krome/build/test.o, $(wildcard krome/build/*.o)) hash.o krome_constants_amuse.o amuse_helpers.o + +amuse_helpers.o: krome_constants_amuse.o + +%.o: %.f90 krome/build/krome + $(FC) $(FFLAGS) -Ikrome/build/ -c -o $@ $< + +clean: + rm -f *.o *.mod + rm -f libchem.a + rm -f krome/build/* + +distclean: clean + rm -f libchem.a diff --git a/src/amuse_kromesph/src/amuse_helpers.f90 b/src/amuse_kromesph/src/amuse_helpers.f90 new file mode 100644 index 0000000000..9a4159ca41 --- /dev/null +++ b/src/amuse_kromesph/src/amuse_helpers.f90 @@ -0,0 +1,475 @@ +module chem_mod + use krome_main !use krome (mandatory) + use krome_user !use utility (for krome_idx_* constants and others) + use krome_commons + use krome_constants + use krome_constants_amuse + implicit none + + type particle_type + integer :: index_of_the_particle + double precision :: rho + double precision :: u + double precision :: gamma + double precision :: mu + double precision :: ionrate + double precision :: abundances(krome_nmols) + end type + + type(particle_type), allocatable :: particles(:) + + double precision :: tcurrent ! time unit = yr + + integer :: nparticle + integer :: tot_id + + integer, parameter :: NMAX = 1000000 + + logical :: particles_searcheable = .FALSE. + integer, allocatable :: pid(:) + +contains + + function chem_initialize() result(ret) + integer :: ret + tcurrent = 0.d0 + nparticle = 0 + tot_id = 0 + if (.not.allocated(particles)) allocate(particles(NMAX)) + particles(:)%rho = 0.d0 + call krome_init() + ret = 0 + end function chem_initialize + + function chem_end() result(ret) + integer :: ret + if (allocated(particles)) deallocate(particles) + ret = 0 + end function chem_end + + function chem_commit_parameters() result(ret) + integer :: ret + ret = 0 + end function chem_commit_parameters + + function chem_commit_particles() result (ret) + integer :: ret + particles_searcheable = .FALSE. + nparticle = clean_particles(particles) + ret = 0 + end function chem_commit_particles + + function chem_model_time(outtime) result(ret) + double precision, intent(out) :: outtime + integer :: ret + outtime = tcurrent + ret = 0 + end function chem_model_time + + function evolve_chem_model(tend) result(ret) + double precision, intent(in) :: tend + double precision :: dt + integer :: i, iret, ret + ret = 0 + dt = tend - tcurrent + if (dt .LE. 0) return + do i=1, nparticle + iret = evolve_1_particle(particles(i), dt) + ret = min(iret, ret) + enddo + tcurrent = tend + end function evolve_chem_model + + function evolve_1_particle(particle, dt) result(ret) + type(particle_type), intent(inout) :: particle + double precision, intent(in) :: dt + double precision :: rho, u, gamma, mu, cr, T + double precision :: n(krome_nmols) + integer :: ret + n = particle%abundances + rho = particle%rho + u = particle%u + gamma = particle%gamma + mu = particle%mu * amu_2_g + cr = particle%ionrate + + n(krome_idx_e) = krome_get_electrons(n(:)) + T = (u*(gamma - 1d0) * mu) / boltzmann_erg + + call krome(n, rho, T, dt) + ! get amu -> g conversion from amuse + particle%mu = krome_get_mu_x(n(:)) * amu_2_g + particle%gamma = krome_get_gamma_x(n(:), T) + particle%u = (boltzmann_erg*T) / ((particle%gamma - 1d0)*particle%mu) + particle%abundances = n(:) + ret = 0 + end function evolve_1_particle + + function get_particle_abundance(index_of_the_particle, abundance_index, abundance) result(ret) + integer, intent(in) :: index_of_the_particle, abundance_index + double precision, intent(out) :: abundance + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + if (abundance_index .LT. 1 .OR. abundance_index .GT. krome_nmols) then + ret = -1 + return + endif + abundance = particles(index)%abundances(abundance_index) + ret = 0 + end function get_particle_abundance + + function set_particle_abundance(index_of_the_particle, abundance_index, abundance) result(ret) + integer, intent(in) :: index_of_the_particle, abundance_index + double precision, intent(in) :: abundance + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + if (abundance_index .LT. 1 .OR. abundance_index .GT. krome_nmols) then + ret = -1 + return + endif + particles(index)%abundances(abundance_index) = abundance + ret = 0 + end function set_particle_abundance + + function set_particle_abundances(index_of_the_particle, abundances, N) result(ret) + integer, intent(in) :: N + integer, intent(in) :: index_of_the_particle(N) + double precision, intent(in) :: abundances(N) + integer :: index, ret + index = find_particle(index_of_the_particle(1)) + if (index .LT. 0) then + ret = index + return + endif + if (N .NE. krome_nmols) then + ret = -2 + return + endif + particles(index)%abundances = abundances + ret = 0 + end function set_particle_abundances + + function set_particle_state(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: rho, u, gamma, mu, ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%rho = rho + particles(index)%u = u + particles(index)%gamma = gamma + particles(index)%mu = mu + particles(index)%ionrate = ionrate + ret = 0 + end function set_particle_state + + function get_particle_state(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: rho, u, gamma, mu, ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + rho = particles(index)%rho + u = particles(index)%u + gamma = particles(index)%gamma + mu = particles(index)%mu + ionrate = particles(index)%ionrate + ret = 0 + end function get_particle_state + + function get_particle_rho(index_of_the_particle, rho) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: rho + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + rho = particles(index)%rho + ret = 0 + end function get_particle_rho + + function set_particle_rho(index_of_the_particle, rho) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: rho + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%rho = rho + ret = 0 + end function set_particle_rho + + function get_particle_internal_energy(index_of_the_particle, u) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: u + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + u = particles(index)%u + ret = 0 + end function get_particle_internal_energy + + function set_particle_internal_energy(index_of_the_particle, u) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: u + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%u = u + ret = 0 + end function set_particle_internal_energy + + function get_particle_gamma(index_of_the_particle, gamma) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: gamma + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + gamma = particles(index)%gamma + ret = 0 + end function get_particle_gamma + + function set_particle_gamma(index_of_the_particle, gamma) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: gamma + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%gamma = gamma + ret = 0 + end function set_particle_gamma + + function get_particle_mu(index_of_the_particle, mu) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: mu + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + mu = particles(index)%mu + ret = 0 + end function get_particle_mu + + function set_particle_mu(index_of_the_particle, mu) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: mu + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%mu = mu + ret = 0 + end function set_particle_mu + + function get_particle_ionrate(index_of_the_particle, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(out) :: ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + ionrate = particles(index)%ionrate + ret = 0 + end function get_particle_ionrate + + function set_particle_ionrate(index_of_the_particle, ionrate) result(ret) + integer, intent(in) :: index_of_the_particle + double precision, intent(in) :: ionrate + integer :: index, ret + index = find_particle(index_of_the_particle) + if (index .LT. 0) then + ret = index + return + endif + particles(index)%ionrate = ionrate + ret = 0 + end function set_particle_ionrate + + function add_particle(index_of_the_particle, rho, u, gamma, mu, ionrate) result(ret) + integer, intent(out) :: index_of_the_particle + double precision, intent(in) :: rho, u, gamma, mu, ionrate + ! double precision :: x(krome_nmols) + integer :: i, ret + + particles_searcheable = .FALSE. + index_of_the_particle = new_id() + i = nparticle + 1 + + if (i .GT. NMAX) then + ret = -1 + return + endif + particles(i)%index_of_the_particle = index_of_the_particle + particles(i)%rho = rho + particles(i)%u = u + particles(i)%gamma = gamma + particles(i)%mu = mu + particles(i)%ionrate = ionrate + particles(i)%abundances = 1.d-40 + + ! if (density.GT.0) then + ! particles(i)%abundances(KROME_idx_H) = 1. !H + ! particles(i)%abundances(KROME_idx_H2) = 1.d-6 !H2 + ! particles(i)%abundances(KROME_idx_Hj) = 1.d-4 !H+ + ! particles(i)%abundances(KROME_idx_He) = 0.0775d0 !He + + ! x=particles(i)%density*particles(i)%abundances + + ! call krome_scale_Z(x(:), 0.d0) ! scale to solar + + ! x(krome_idx_Cj) = x(krome_idx_C) !carbon is fully ionized + ! x(krome_idx_C) = 1d-40 + ! x(krome_idx_e) = krome_get_electrons(x(:)) + + ! particles(i)%abundances=x/particles(i)%density + ! endif + + nparticle = nparticle + 1 + ret = 0 + end function add_particle + + function remove_particle(index_of_the_particle) result(ret) + integer, intent(in) :: index_of_the_particle + integer :: i, ret + i = find_particle(index_of_the_particle) + if (i .LE. 0) then + ret = i + return + endif + if (particles(i)%rho .LT. 0) then + ret = -4 + return + endif + particles(i)%rho = -1. + ret = 0 + end function remove_particle + +function clean_particles(par) result(np) + type(particle_type), allocatable, intent(inout) :: par(:) + type(particle_type) :: tmp + integer :: left, right, np + left = 1 + if (.NOT. allocated(par)) then + np = 0 + return + endif + right = size(par) + if (right .EQ. 0) then + np = 0 + return + endif + do while(.TRUE.) + do while(par(left)%rho .GT. 0 .AND. left .LT. right) + left = left + 1 + enddo + do while(par(right)%rho .LE. 0 .AND. left .LT. right) + right = right - 1 + enddo + if (left .LT. right) then + tmp = par(left) + par(left) = par(right) + par(right) = tmp + else + exit + endif + enddo + if (par(left)%rho .GT. 0) left = left + 1 + np = left - 1 +end function clean_particles + +function find_particle(index_of_the_particle) result(index) + use hashMod, only : hash_type, initHash, find + integer, intent(in) :: index_of_the_particle + integer :: index + type(hash_type), save :: hash + integer, save :: nbod = 0 + + if (.NOT. particles_searcheable) then + nbod = nparticle + if (allocated(pid)) deallocate(pid) + allocate(pid(nbod)) + pid(1:nbod) = particles(1:nbod)%index_of_the_particle + call initHash(nbod/2+1, nbod, pid, hash) + particles_searcheable = .TRUE. + endif + index = find(index_of_the_particle, pid, hash) + if (index .LE. 0) then + index = -1 + return + endif + if (index .GT. nbod) then + index = -2 + return + endif + if (pid(index) .NE. index_of_the_particle) then + index = -3 + return + endif +end function find_particle + +subroutine extend_particles(buf, n) + type(particle_type), allocatable, intent(inout) :: buf(:) + type(particle_type), allocatable :: tmpbuf(:) + integer, intent(in) :: n + integer :: m + + m = 0 + if (allocated(buf)) then + m = min(n, size(buf)) + allocate(tmpbuf(m)) + tmpbuf(1:m) = buf(1:m) + deallocate(buf) + endif + + allocate(buf(n)) + + if (m .GT. 0 .and. allocated(tmpbuf)) then + buf(1:m) = tmpbuf(1:m) + deallocate(tmpbuf) + endif + +end subroutine extend_particles + +function new_id() + integer new_id + tot_id = tot_id + 1 + new_id = tot_id +end function new_id + +end module chem_mod diff --git a/src/amuse_kromesph/src/hash.f90 b/src/amuse_kromesph/src/hash.f90 new file mode 100644 index 0000000000..5f2a4ff653 --- /dev/null +++ b/src/amuse_kromesph/src/hash.f90 @@ -0,0 +1,82 @@ +module hashMod +! simple integer hash + +private +public :: initHash, find, endHash, hash_type + +type hash_type + integer, allocatable :: nextkey(:) + integer :: nkey +end type + + contains + +function hashfunc(nkey,dat) + integer :: dat,nkey,hashfunc + hashfunc=ABS(mod(dat,nkey))+1 +end function + +subroutine initHash(nk,n,dat,hash) + integer :: nk,n,dat(n) + type(hash_type) :: hash + hash%nkey=nk + if(allocated(hash%nextkey)) call endHash(hash) + allocate(hash%nextkey(hash%nkey+n)) + call insert(n,dat,hash) +end subroutine + +subroutine insert(n,dat,hash) + integer :: i,n,next,dat(n) + type(hash_type) :: hash + hash%nextkey(1:hash%nkey)=0 + do i=1,n + next=hashfunc(hash%nkey,dat(i)) + do while(hash%nextkey(next).NE.0) + next=hash%nextkey(next) + enddo + hash%nextkey(next)=hash%nkey+i + hash%nextkey(hash%nkey+i)=0 + enddo +end subroutine + +function find(item,dat,hash) result(next) + integer :: item,dat(*) + integer :: next + type(hash_type) :: hash + next=hashfunc(hash%nkey,item) + next=hash%nextkey(next) + do + if(next.EQ.0) exit + if(dat(next-hash%nkey).EQ.item) exit + next=hash%nextkey(next) + enddo + if(next.NE.0) next=next-hash%nkey +end function + +subroutine endHash(hash) + type(hash_type) :: hash + deallocate(hash%nextkey) +end subroutine + +end module + + +subroutine test + use hashMod + type(hash_type) :: hash + integer :: n,i,dat(13) + + n=1 + dat=(/12,2,3,4,5,5,6,12,13,16,-6,0,-8383/) + + call inithash(1,1,dat(1:n),hash) + +10 read*,i + if(i.eq.-999) stop + i=find(i,dat(1:n),hash) + if(i.NE.0) print*,i,dat(i) + goto 10 + + call endHash(hash) + +end subroutine diff --git a/src/amuse_kromesph/src/krome_constants_amuse.f90 b/src/amuse_kromesph/src/krome_constants_amuse.f90 new file mode 100644 index 0000000000..0b9f7d90d0 --- /dev/null +++ b/src/amuse_kromesph/src/krome_constants_amuse.f90 @@ -0,0 +1,8 @@ +! This module exists so that AMUSE can send the +! atomic mass unit value in grams to Krome at runtime. +module krome_constants_amuse + implicit none + + double precision :: amu_2_g + +end module krome_constants_amuse diff --git a/src/amuse_kromesph/support/aclocal.m4 b/src/amuse_kromesph/support/aclocal.m4 new file mode 100644 index 0000000000..11fd05ebb7 --- /dev/null +++ b/src/amuse_kromesph/support/aclocal.m4 @@ -0,0 +1,21 @@ +# generated automatically by aclocal 1.18.1 -*- Autoconf -*- + +# Copyright (C) 1996-2025 Free Software Foundation, Inc. + +# This file is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +m4_ifndef([AC_CONFIG_MACRO_DIRS], [m4_defun([_AM_CONFIG_MACRO_DIRS], [])m4_defun([AC_CONFIG_MACRO_DIRS], [_AM_CONFIG_MACRO_DIRS($@)])]) +m4_include([shared/m4/amuse_download.m4]) +m4_include([shared/m4/amuse_lib.m4]) +m4_include([shared/m4/amuse_venv.m4]) +m4_include([shared/m4/ax_count_cpus.m4]) +m4_include([shared/m4/ax_mpi.m4]) +m4_include([shared/m4/fortran.m4]) +m4_include([shared/m4/pkg.m4]) diff --git a/src/amuse_kromesph/support/config.mk.in b/src/amuse_kromesph/support/config.mk.in new file mode 100644 index 0000000000..a9e5734a46 --- /dev/null +++ b/src/amuse_kromesph/support/config.mk.in @@ -0,0 +1,27 @@ +# Compilers +FC = @FC@ + +MPIFC = @MPIFC@ + +CPU_COUNT = @CPU_COUNT@ + +# Tools +AR = @AR@ +RANLIB = @RANLIB@ +DOWNLOAD = @DOWNLOAD@ + + +# General flags and libraries +FCFLAGS = @FCFLAGS@ +LDFLAGS = @LDFLAGS@ + +LIBS = @LIBS@ + + +# AMUSE framework libraries +FORSOCKETS_CFLAGS = @FORSOCKETS_CFLAGS@ +FORSOCKETS_LIBS = @FORSOCKETS_LIBS@ + + +# External dependencies + diff --git a/src/amuse_kromesph/support/configure b/src/amuse_kromesph/support/configure new file mode 100755 index 0000000000..580f29e1cd --- /dev/null +++ b/src/amuse_kromesph/support/configure @@ -0,0 +1,6342 @@ +#! /bin/sh +# Guess values for system-dependent variables and create Makefiles. +# Generated by GNU Autoconf 2.72 for amuse-krome 1.0. +# +# +# Copyright (C) 1992-1996, 1998-2017, 2020-2023 Free Software Foundation, +# Inc. +# +# +# This configure script is free software; the Free Software Foundation +# gives unlimited permission to copy, distribute and modify it. +## -------------------- ## +## M4sh Initialization. ## +## -------------------- ## + +# Be more Bourne compatible +DUALCASE=1; export DUALCASE # for MKS sh +if test ${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which + # is contrary to our usage. Disable this feature. + alias -g '${1+"$@"}'='"$@"' + setopt NO_GLOB_SUBST +else case e in #( + e) case `(set -o) 2>/dev/null` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi + + + +# Reset variables that may have inherited troublesome values from +# the environment. + +# IFS needs to be set, to space, tab, and newline, in precisely that order. +# (If _AS_PATH_WALK were called with IFS unset, it would have the +# side effect of setting IFS to empty, thus disabling word splitting.) +# Quoting is to prevent editors from complaining about space-tab. +as_nl=' +' +export as_nl +IFS=" "" $as_nl" + +PS1='$ ' +PS2='> ' +PS4='+ ' + +# Ensure predictable behavior from utilities with locale-dependent output. +LC_ALL=C +export LC_ALL +LANGUAGE=C +export LANGUAGE + +# We cannot yet rely on "unset" to work, but we need these variables +# to be unset--not just set to an empty or harmless value--now, to +# avoid bugs in old shells (e.g. pre-3.0 UWIN ksh). This construct +# also avoids known problems related to "unset" and subshell syntax +# in other old shells (e.g. bash 2.01 and pdksh 5.2.14). +for as_var in BASH_ENV ENV MAIL MAILPATH CDPATH +do eval test \${$as_var+y} \ + && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || : +done + +# Ensure that fds 0, 1, and 2 are open. +if (exec 3>&0) 2>/dev/null; then :; else exec 0&1) 2>/dev/null; then :; else exec 1>/dev/null; fi +if (exec 3>&2) ; then :; else exec 2>/dev/null; fi + +# The user is always right. +if ${PATH_SEPARATOR+false} :; then + PATH_SEPARATOR=: + (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { + (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || + PATH_SEPARATOR=';' + } +fi + + +# Find who we are. Look in the path if we contain no directory separator. +as_myself= +case $0 in #(( + *[\\/]* ) as_myself=$0 ;; + *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + test -r "$as_dir$0" && as_myself=$as_dir$0 && break + done +IFS=$as_save_IFS + + ;; +esac +# We did not find ourselves, most probably we were run as 'sh COMMAND' +# in which case we are not to be found in the path. +if test "x$as_myself" = x; then + as_myself=$0 +fi +if test ! -f "$as_myself"; then + printf "%s\n" "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2 + exit 1 +fi + + +# Use a proper internal environment variable to ensure we don't fall + # into an infinite loop, continuously re-executing ourselves. + if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then + _as_can_reexec=no; export _as_can_reexec; + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed 'exec'. +printf "%s\n" "$0: could not re-execute with $CONFIG_SHELL" >&2 +exit 255 + fi + # We don't want this to propagate to other subprocesses. + { _as_can_reexec=; unset _as_can_reexec;} +if test "x$CONFIG_SHELL" = x; then + as_bourne_compatible="if test \${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which + # is contrary to our usage. Disable this feature. + alias -g '\${1+\"\$@\"}'='\"\$@\"' + setopt NO_GLOB_SUBST +else case e in #( + e) case \`(set -o) 2>/dev/null\` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi +" + as_required="as_fn_return () { (exit \$1); } +as_fn_success () { as_fn_return 0; } +as_fn_failure () { as_fn_return 1; } +as_fn_ret_success () { return 0; } +as_fn_ret_failure () { return 1; } + +exitcode=0 +as_fn_success || { exitcode=1; echo as_fn_success failed.; } +as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } +as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } +as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } +if ( set x; as_fn_ret_success y && test x = \"\$1\" ) +then : + +else case e in #( + e) exitcode=1; echo positional parameters were not saved. ;; +esac +fi +test x\$exitcode = x0 || exit 1 +blah=\$(echo \$(echo blah)) +test x\"\$blah\" = xblah || exit 1 +test -x / || exit 1" + as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO + as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO + eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" && + test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1 +test \$(( 1 + 1 )) = 2 || exit 1" + if (eval "$as_required") 2>/dev/null +then : + as_have_required=yes +else case e in #( + e) as_have_required=no ;; +esac +fi + if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null +then : + +else case e in #( + e) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +as_found=false +for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + as_found=: + case $as_dir in #( + /*) + for as_base in sh bash ksh sh5; do + # Try only shells that exist, to save several forks. + as_shell=$as_dir$as_base + if { test -f "$as_shell" || test -f "$as_shell.exe"; } && + as_run=a "$as_shell" -c "$as_bourne_compatible""$as_required" 2>/dev/null +then : + CONFIG_SHELL=$as_shell as_have_required=yes + if as_run=a "$as_shell" -c "$as_bourne_compatible""$as_suggested" 2>/dev/null +then : + break 2 +fi +fi + done;; + esac + as_found=false +done +IFS=$as_save_IFS +if $as_found +then : + +else case e in #( + e) if { test -f "$SHELL" || test -f "$SHELL.exe"; } && + as_run=a "$SHELL" -c "$as_bourne_compatible""$as_required" 2>/dev/null +then : + CONFIG_SHELL=$SHELL as_have_required=yes +fi ;; +esac +fi + + + if test "x$CONFIG_SHELL" != x +then : + export CONFIG_SHELL + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed 'exec'. +printf "%s\n" "$0: could not re-execute with $CONFIG_SHELL" >&2 +exit 255 +fi + + if test x$as_have_required = xno +then : + printf "%s\n" "$0: This script requires a shell more modern than all" + printf "%s\n" "$0: the shells that I found on your system." + if test ${ZSH_VERSION+y} ; then + printf "%s\n" "$0: In particular, zsh $ZSH_VERSION has bugs and should" + printf "%s\n" "$0: be upgraded to zsh 4.3.4 or later." + else + printf "%s\n" "$0: Please tell bug-autoconf@gnu.org about your system, +$0: including any error possibly output before this +$0: message. Then install a modern shell, or manually run +$0: the script under such a shell if you do have one." + fi + exit 1 +fi ;; +esac +fi +fi +SHELL=${CONFIG_SHELL-/bin/sh} +export SHELL +# Unset more variables known to interfere with behavior of common tools. +CLICOLOR_FORCE= GREP_OPTIONS= +unset CLICOLOR_FORCE GREP_OPTIONS + +## --------------------- ## +## M4sh Shell Functions. ## +## --------------------- ## +# as_fn_unset VAR +# --------------- +# Portably unset VAR. +as_fn_unset () +{ + { eval $1=; unset $1;} +} +as_unset=as_fn_unset + + +# as_fn_set_status STATUS +# ----------------------- +# Set $? to STATUS, without forking. +as_fn_set_status () +{ + return $1 +} # as_fn_set_status + +# as_fn_exit STATUS +# ----------------- +# Exit the shell with STATUS, even in a "trap 0" or "set -e" context. +as_fn_exit () +{ + set +e + as_fn_set_status $1 + exit $1 +} # as_fn_exit + +# as_fn_mkdir_p +# ------------- +# Create "$as_dir" as a directory, including parents if necessary. +as_fn_mkdir_p () +{ + + case $as_dir in #( + -*) as_dir=./$as_dir;; + esac + test -d "$as_dir" || eval $as_mkdir_p || { + as_dirs= + while :; do + case $as_dir in #( + *\'*) as_qdir=`printf "%s\n" "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'( + *) as_qdir=$as_dir;; + esac + as_dirs="'$as_qdir' $as_dirs" + as_dir=`$as_dirname -- "$as_dir" || +$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$as_dir" : 'X\(//\)[^/]' \| \ + X"$as_dir" : 'X\(//\)$' \| \ + X"$as_dir" : 'X\(/\)' \| . 2>/dev/null || +printf "%s\n" X"$as_dir" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + test -d "$as_dir" && break + done + test -z "$as_dirs" || eval "mkdir $as_dirs" + } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir" + + +} # as_fn_mkdir_p + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p +# as_fn_append VAR VALUE +# ---------------------- +# Append the text in VALUE to the end of the definition contained in VAR. Take +# advantage of any shell optimizations that allow amortized linear growth over +# repeated appends, instead of the typical quadratic growth present in naive +# implementations. +if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null +then : + eval 'as_fn_append () + { + eval $1+=\$2 + }' +else case e in #( + e) as_fn_append () + { + eval $1=\$$1\$2 + } ;; +esac +fi # as_fn_append + +# as_fn_arith ARG... +# ------------------ +# Perform arithmetic evaluation on the ARGs, and store the result in the +# global $as_val. Take advantage of shells that can avoid forks. The arguments +# must be portable across $(()) and expr. +if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null +then : + eval 'as_fn_arith () + { + as_val=$(( $* )) + }' +else case e in #( + e) as_fn_arith () + { + as_val=`expr "$@" || test $? -eq 1` + } ;; +esac +fi # as_fn_arith + + +# as_fn_error STATUS ERROR [LINENO LOG_FD] +# ---------------------------------------- +# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are +# provided, also output the error to LOG_FD, referencing LINENO. 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We do this before executing the actions. + rm -rf conftest.dSYM conftest_ipa8_conftest.oo + eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno + as_fn_set_status $ac_retval + +} # ac_fn_fc_try_link + +# ac_fn_c_try_compile LINENO +# -------------------------- +# Try to compile conftest.$ac_ext, and return whether this succeeded. +ac_fn_c_try_compile () +{ + as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack + rm -f conftest.$ac_objext conftest.beam + if { { ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compile") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + grep -v '^ *+' conftest.err >conftest.er1 + cat conftest.er1 >&5 + mv -f conftest.er1 conftest.err + fi + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext +then : + ac_retval=0 +else case e in #( + e) printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_retval=1 ;; +esac +fi + eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno + as_fn_set_status $ac_retval + +} # ac_fn_c_try_compile + +# ac_fn_c_try_link LINENO +# ----------------------- +# Try to link conftest.$ac_ext, and return whether this succeeded. +ac_fn_c_try_link () +{ + as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack + rm -f conftest.$ac_objext conftest.beam conftest$ac_exeext + if { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + grep -v '^ *+' conftest.err >conftest.er1 + cat conftest.er1 >&5 + mv -f conftest.er1 conftest.err + fi + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } && { + test -z "$ac_c_werror_flag" || + test ! -s conftest.err + } && test -s conftest$ac_exeext && { + test "$cross_compiling" = yes || + test -x conftest$ac_exeext + } +then : + ac_retval=0 +else case e in #( + e) printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_retval=1 ;; +esac +fi + # Delete the IPA/IPO (Inter Procedural Analysis/Optimization) information + # created by the PGI compiler (conftest_ipa8_conftest.oo), as it would + # interfere with the next link command; also delete a directory that is + # left behind by Apple's compiler. We do this before executing the actions. + rm -rf conftest.dSYM conftest_ipa8_conftest.oo + eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno + as_fn_set_status $ac_retval + +} # ac_fn_c_try_link +ac_configure_args_raw= +for ac_arg +do + case $ac_arg in + *\'*) + ac_arg=`printf "%s\n" "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;; + esac + as_fn_append ac_configure_args_raw " '$ac_arg'" +done + +case $ac_configure_args_raw in + *$as_nl*) + ac_safe_unquote= ;; + *) + ac_unsafe_z='|&;<>()$`\\"*?[ '' ' # This string ends in space, tab. + ac_unsafe_a="$ac_unsafe_z#~" + ac_safe_unquote="s/ '\\([^$ac_unsafe_a][^$ac_unsafe_z]*\\)'/ \\1/g" + ac_configure_args_raw=` printf "%s\n" "$ac_configure_args_raw" | sed "$ac_safe_unquote"`;; +esac + +cat >config.log <<_ACEOF +This file contains any messages produced by compilers while +running configure, to aid debugging if configure makes a mistake. + +It was created by amuse-krome $as_me 1.0, which was +generated by GNU Autoconf 2.72. Invocation command line was + + $ $0$ac_configure_args_raw + +_ACEOF +exec 5>>config.log +{ +cat <<_ASUNAME +## --------- ## +## Platform. ## +## --------- ## + +hostname = `(hostname || uname -n) 2>/dev/null | sed 1q` +uname -m = `(uname -m) 2>/dev/null || echo unknown` +uname -r = `(uname -r) 2>/dev/null || echo unknown` +uname -s = `(uname -s) 2>/dev/null || echo unknown` +uname -v = `(uname -v) 2>/dev/null || echo unknown` + +/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown` +/bin/uname -X = `(/bin/uname -X) 2>/dev/null || echo unknown` + +/bin/arch = `(/bin/arch) 2>/dev/null || echo unknown` +/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown` +/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown` +/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown` +/bin/machine = `(/bin/machine) 2>/dev/null || echo unknown` +/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown` +/bin/universe = `(/bin/universe) 2>/dev/null || echo unknown` + +_ASUNAME + +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + printf "%s\n" "PATH: $as_dir" + done +IFS=$as_save_IFS + +} >&5 + +cat >&5 <<_ACEOF + + +## ----------- ## +## Core tests. ## +## ----------- ## + +_ACEOF + + +# Keep a trace of the command line. +# Strip out --no-create and --no-recursion so they do not pile up. +# Strip out --silent because we don't want to record it for future runs. +# Also quote any args containing shell meta-characters. +# Make two passes to allow for proper duplicate-argument suppression. +ac_configure_args= +ac_configure_args0= +ac_configure_args1= +ac_must_keep_next=false +for ac_pass in 1 2 +do + for ac_arg + do + case $ac_arg in + -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;; + -q | -quiet | --quiet | --quie | --qui | --qu | --q \ + | -silent | --silent | --silen | --sile | --sil) + continue ;; + *\'*) + ac_arg=`printf "%s\n" "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;; + esac + case $ac_pass in + 1) as_fn_append ac_configure_args0 " '$ac_arg'" ;; + 2) + as_fn_append ac_configure_args1 " '$ac_arg'" + if test $ac_must_keep_next = true; then + ac_must_keep_next=false # Got value, back to normal. + else + case $ac_arg in + *=* | --config-cache | -C | -disable-* | --disable-* \ + | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \ + | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \ + | -with-* | --with-* | -without-* | --without-* | --x) + case "$ac_configure_args0 " in + "$ac_configure_args1"*" '$ac_arg' "* ) continue ;; + esac + ;; + -* ) ac_must_keep_next=true ;; + esac + fi + as_fn_append ac_configure_args " '$ac_arg'" + ;; + esac + done +done +{ ac_configure_args0=; unset ac_configure_args0;} +{ ac_configure_args1=; unset ac_configure_args1;} + +# When interrupted or exit'd, cleanup temporary files, and complete +# config.log. We remove comments because anyway the quotes in there +# would cause problems or look ugly. +# WARNING: Use '\'' to represent an apostrophe within the trap. +# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug. +trap 'exit_status=$? + # Sanitize IFS. + IFS=" "" $as_nl" + # Save into config.log some information that might help in debugging. + { + echo + + printf "%s\n" "## ---------------- ## +## Cache variables. ## +## ---------------- ##" + echo + # The following way of writing the cache mishandles newlines in values, +( + for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do + eval ac_val=\$$ac_var + case $ac_val in #( + *${as_nl}*) + case $ac_var in #( + *_cv_*) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5 +printf "%s\n" "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; + esac + case $ac_var in #( + _ | IFS | as_nl) ;; #( + BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( + *) { eval $ac_var=; unset $ac_var;} ;; + esac ;; + esac + done + (set) 2>&1 | + case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #( + *${as_nl}ac_space=\ *) + sed -n \ + "s/'\''/'\''\\\\'\'''\''/g; + s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p" + ;; #( + *) + sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" + ;; + esac | + sort +) + echo + + printf "%s\n" "## ----------------- ## +## Output variables. ## +## ----------------- ##" + echo + for ac_var in $ac_subst_vars + do + eval ac_val=\$$ac_var + case $ac_val in + *\'\''*) ac_val=`printf "%s\n" "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; + esac + printf "%s\n" "$ac_var='\''$ac_val'\''" + done | sort + echo + + if test -n "$ac_subst_files"; then + printf "%s\n" "## ------------------- ## +## File substitutions. ## +## ------------------- ##" + echo + for ac_var in $ac_subst_files + do + eval ac_val=\$$ac_var + case $ac_val in + *\'\''*) ac_val=`printf "%s\n" "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; + esac + printf "%s\n" "$ac_var='\''$ac_val'\''" + done | sort + echo + fi + + if test -s confdefs.h; then + printf "%s\n" "## ----------- ## +## confdefs.h. ## +## ----------- ##" + echo + cat confdefs.h + echo + fi + test "$ac_signal" != 0 && + printf "%s\n" "$as_me: caught signal $ac_signal" + printf "%s\n" "$as_me: exit $exit_status" + } >&5 + rm -f core *.core core.conftest.* && + rm -f -r conftest* confdefs* conf$$* $ac_clean_files && + exit $exit_status +' 0 +for ac_signal in 1 2 13 15; do + trap 'ac_signal='$ac_signal'; as_fn_exit 1' $ac_signal +done +ac_signal=0 + +# confdefs.h avoids OS command line length limits that DEFS can exceed. +rm -f -r conftest* confdefs.h + +printf "%s\n" "/* confdefs.h */" > confdefs.h + +# Predefined preprocessor variables. + +printf "%s\n" "#define PACKAGE_NAME \"$PACKAGE_NAME\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_TARNAME \"$PACKAGE_TARNAME\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_VERSION \"$PACKAGE_VERSION\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_STRING \"$PACKAGE_STRING\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_BUGREPORT \"$PACKAGE_BUGREPORT\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_URL \"$PACKAGE_URL\"" >>confdefs.h + + +# Let the site file select an alternate cache file if it wants to. +# Prefer an explicitly selected file to automatically selected ones. +if test -n "$CONFIG_SITE"; then + ac_site_files="$CONFIG_SITE" +elif test "x$prefix" != xNONE; then + ac_site_files="$prefix/share/config.site $prefix/etc/config.site" +else + ac_site_files="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site" +fi + +for ac_site_file in $ac_site_files +do + case $ac_site_file in #( + */*) : + ;; #( + *) : + ac_site_file=./$ac_site_file ;; +esac + if test -f "$ac_site_file" && test -r "$ac_site_file"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5 +printf "%s\n" "$as_me: loading site script $ac_site_file" >&6;} + sed 's/^/| /' "$ac_site_file" >&5 + . "$ac_site_file" \ + || { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "failed to load site script $ac_site_file +See 'config.log' for more details" "$LINENO" 5; } + fi +done + +if test -r "$cache_file"; then + # Some versions of bash will fail to source /dev/null (special files + # actually), so we avoid doing that. DJGPP emulates it as a regular file. + if test /dev/null != "$cache_file" && test -f "$cache_file"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: loading cache $cache_file" >&5 +printf "%s\n" "$as_me: loading cache $cache_file" >&6;} + case $cache_file in + [\\/]* | ?:[\\/]* ) . "$cache_file";; + *) . "./$cache_file";; + esac + fi +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: creating cache $cache_file" >&5 +printf "%s\n" "$as_me: creating cache $cache_file" >&6;} + >$cache_file +fi + +# Test code for whether the C compiler supports C89 (global declarations) +ac_c_conftest_c89_globals=' +/* Does the compiler advertise C89 conformance? + Do not test the value of __STDC__, because some compilers set it to 0 + while being otherwise adequately conformant. */ +#if !defined __STDC__ +# error "Compiler does not advertise C89 conformance" +#endif + +#include +#include +struct stat; +/* Most of the following tests are stolen from RCS 5.7 src/conf.sh. */ +struct buf { int x; }; +struct buf * (*rcsopen) (struct buf *, struct stat *, int); +static char *e (char **p, int i) +{ + return p[i]; +} +static char *f (char * (*g) (char **, int), char **p, ...) +{ + char *s; + va_list v; + va_start (v,p); + s = g (p, va_arg (v,int)); + va_end (v); + return s; +} + +/* C89 style stringification. */ +#define noexpand_stringify(a) #a +const char *stringified = noexpand_stringify(arbitrary+token=sequence); + +/* C89 style token pasting. Exercises some of the corner cases that + e.g. old MSVC gets wrong, but not very hard. */ +#define noexpand_concat(a,b) a##b +#define expand_concat(a,b) noexpand_concat(a,b) +extern int vA; +extern int vbee; +#define aye A +#define bee B +int *pvA = &expand_concat(v,aye); +int *pvbee = &noexpand_concat(v,bee); + +/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has + function prototypes and stuff, but not \xHH hex character constants. + These do not provoke an error unfortunately, instead are silently treated + as an "x". The following induces an error, until -std is added to get + proper ANSI mode. Curiously \x00 != x always comes out true, for an + array size at least. It is necessary to write \x00 == 0 to get something + that is true only with -std. */ +int osf4_cc_array ['\''\x00'\'' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) '\''x'\'' +int xlc6_cc_array[FOO(a) == '\''x'\'' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, int *(*)(struct buf *, struct stat *, int), + int, int);' + +# Test code for whether the C compiler supports C89 (body of main). +ac_c_conftest_c89_main=' +ok |= (argc == 0 || f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]); +' + +# Test code for whether the C compiler supports C99 (global declarations) +ac_c_conftest_c99_globals=' +/* Does the compiler advertise C99 conformance? */ +#if !defined __STDC_VERSION__ || __STDC_VERSION__ < 199901L +# error "Compiler does not advertise C99 conformance" +#endif + +// See if C++-style comments work. + +#include +extern int puts (const char *); +extern int printf (const char *, ...); +extern int dprintf (int, const char *, ...); +extern void *malloc (size_t); +extern void free (void *); + +// Check varargs macros. These examples are taken from C99 6.10.3.5. +// dprintf is used instead of fprintf to avoid needing to declare +// FILE and stderr. +#define debug(...) dprintf (2, __VA_ARGS__) +#define showlist(...) puts (#__VA_ARGS__) +#define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) +static void +test_varargs_macros (void) +{ + int x = 1234; + int y = 5678; + debug ("Flag"); + debug ("X = %d\n", x); + showlist (The first, second, and third items.); + report (x>y, "x is %d but y is %d", x, y); +} + +// Check long long types. +#define BIG64 18446744073709551615ull +#define BIG32 4294967295ul +#define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) +#if !BIG_OK + #error "your preprocessor is broken" +#endif +#if BIG_OK +#else + #error "your preprocessor is broken" +#endif +static long long int bignum = -9223372036854775807LL; +static unsigned long long int ubignum = BIG64; + +struct incomplete_array +{ + int datasize; + double data[]; +}; + +struct named_init { + int number; + const wchar_t *name; + double average; +}; + +typedef const char *ccp; + +static inline int +test_restrict (ccp restrict text) +{ + // Iterate through items via the restricted pointer. + // Also check for declarations in for loops. + for (unsigned int i = 0; *(text+i) != '\''\0'\''; ++i) + continue; + return 0; +} + +// Check varargs and va_copy. +static bool +test_varargs (const char *format, ...) +{ + va_list args; + va_start (args, format); + va_list args_copy; + va_copy (args_copy, args); + + const char *str = ""; + int number = 0; + float fnumber = 0; + + while (*format) + { + switch (*format++) + { + case '\''s'\'': // string + str = va_arg (args_copy, const char *); + break; + case '\''d'\'': // int + number = va_arg (args_copy, int); + break; + case '\''f'\'': // float + fnumber = va_arg (args_copy, double); + break; + default: + break; + } + } + va_end (args_copy); + va_end (args); + + return *str && number && fnumber; +} +' + +# Test code for whether the C compiler supports C99 (body of main). +ac_c_conftest_c99_main=' + // Check bool. + _Bool success = false; + success |= (argc != 0); + + // Check restrict. + if (test_restrict ("String literal") == 0) + success = true; + char *restrict newvar = "Another string"; + + // Check varargs. + success &= test_varargs ("s, d'\'' f .", "string", 65, 34.234); + test_varargs_macros (); + + // Check flexible array members. + struct incomplete_array *ia = + malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); + ia->datasize = 10; + for (int i = 0; i < ia->datasize; ++i) + ia->data[i] = i * 1.234; + // Work around memory leak warnings. + free (ia); + + // Check named initializers. + struct named_init ni = { + .number = 34, + .name = L"Test wide string", + .average = 543.34343, + }; + + ni.number = 58; + + int dynamic_array[ni.number]; + dynamic_array[0] = argv[0][0]; + dynamic_array[ni.number - 1] = 543; + + // work around unused variable warnings + ok |= (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == '\''x'\'' + || dynamic_array[ni.number - 1] != 543); +' + +# Test code for whether the C compiler supports C11 (global declarations) +ac_c_conftest_c11_globals=' +/* Does the compiler advertise C11 conformance? */ +#if !defined __STDC_VERSION__ || __STDC_VERSION__ < 201112L +# error "Compiler does not advertise C11 conformance" +#endif + +// Check _Alignas. +char _Alignas (double) aligned_as_double; +char _Alignas (0) no_special_alignment; +extern char aligned_as_int; +char _Alignas (0) _Alignas (int) aligned_as_int; + +// Check _Alignof. +enum +{ + int_alignment = _Alignof (int), + int_array_alignment = _Alignof (int[100]), + char_alignment = _Alignof (char) +}; +_Static_assert (0 < -_Alignof (int), "_Alignof is signed"); + +// Check _Noreturn. +int _Noreturn does_not_return (void) { for (;;) continue; } + +// Check _Static_assert. +struct test_static_assert +{ + int x; + _Static_assert (sizeof (int) <= sizeof (long int), + "_Static_assert does not work in struct"); + long int y; +}; + +// Check UTF-8 literals. +#define u8 syntax error! +char const utf8_literal[] = u8"happens to be ASCII" "another string"; + +// Check duplicate typedefs. +typedef long *long_ptr; +typedef long int *long_ptr; +typedef long_ptr long_ptr; + +// Anonymous structures and unions -- taken from C11 6.7.2.1 Example 1. +struct anonymous +{ + union { + struct { int i; int j; }; + struct { int k; long int l; } w; + }; + int m; +} v1; +' + +# Test code for whether the C compiler supports C11 (body of main). +ac_c_conftest_c11_main=' + _Static_assert ((offsetof (struct anonymous, i) + == offsetof (struct anonymous, w.k)), + "Anonymous union alignment botch"); + v1.i = 2; + v1.w.k = 5; + ok |= v1.i != 5; +' + +# Test code for whether the C compiler supports C11 (complete). +ac_c_conftest_c11_program="${ac_c_conftest_c89_globals} +${ac_c_conftest_c99_globals} +${ac_c_conftest_c11_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + ${ac_c_conftest_c99_main} + ${ac_c_conftest_c11_main} + return ok; +} +" + +# Test code for whether the C compiler supports C99 (complete). +ac_c_conftest_c99_program="${ac_c_conftest_c89_globals} +${ac_c_conftest_c99_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + ${ac_c_conftest_c99_main} + return ok; +} +" + +# Test code for whether the C compiler supports C89 (complete). +ac_c_conftest_c89_program="${ac_c_conftest_c89_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + return ok; +} +" + + +# Auxiliary files required by this configure script. +ac_aux_files="config.guess config.sub" + +# Locations in which to look for auxiliary files. +ac_aux_dir_candidates="${srcdir}/shared" + +# Search for a directory containing all of the required auxiliary files, +# $ac_aux_files, from the $PATH-style list $ac_aux_dir_candidates. +# If we don't find one directory that contains all the files we need, +# we report the set of missing files from the *first* directory in +# $ac_aux_dir_candidates and give up. +ac_missing_aux_files="" +ac_first_candidate=: +printf "%s\n" "$as_me:${as_lineno-$LINENO}: looking for aux files: $ac_aux_files" >&5 +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +as_found=false +for as_dir in $ac_aux_dir_candidates +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + as_found=: + + printf "%s\n" "$as_me:${as_lineno-$LINENO}: trying $as_dir" >&5 + ac_aux_dir_found=yes + ac_install_sh= + for ac_aux in $ac_aux_files + do + # As a special case, if "install-sh" is required, that requirement + # can be satisfied by any of "install-sh", "install.sh", or "shtool", + # and $ac_install_sh is set appropriately for whichever one is found. + if test x"$ac_aux" = x"install-sh" + then + if test -f "${as_dir}install-sh"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}install-sh found" >&5 + ac_install_sh="${as_dir}install-sh -c" + elif test -f "${as_dir}install.sh"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}install.sh found" >&5 + ac_install_sh="${as_dir}install.sh -c" + elif test -f "${as_dir}shtool"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}shtool found" >&5 + ac_install_sh="${as_dir}shtool install -c" + else + ac_aux_dir_found=no + if $ac_first_candidate; then + ac_missing_aux_files="${ac_missing_aux_files} install-sh" + else + break + fi + fi + else + if test -f "${as_dir}${ac_aux}"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}${ac_aux} found" >&5 + else + ac_aux_dir_found=no + if $ac_first_candidate; then + ac_missing_aux_files="${ac_missing_aux_files} ${ac_aux}" + else + break + fi + fi + fi + done + if test "$ac_aux_dir_found" = yes; then + ac_aux_dir="$as_dir" + break + fi + ac_first_candidate=false + + as_found=false +done +IFS=$as_save_IFS +if $as_found +then : + +else case e in #( + e) as_fn_error $? "cannot find required auxiliary files:$ac_missing_aux_files" "$LINENO" 5 ;; +esac +fi + + +# These three variables are undocumented and unsupported, +# and are intended to be withdrawn in a future Autoconf release. +# They can cause serious problems if a builder's source tree is in a directory +# whose full name contains unusual characters. +if test -f "${ac_aux_dir}config.guess"; then + ac_config_guess="$SHELL ${ac_aux_dir}config.guess" +fi +if test -f "${ac_aux_dir}config.sub"; then + ac_config_sub="$SHELL ${ac_aux_dir}config.sub" +fi +if test -f "$ac_aux_dir/configure"; then + ac_configure="$SHELL ${ac_aux_dir}configure" +fi + +# Check that the precious variables saved in the cache have kept the same +# value. +ac_cache_corrupted=false +for ac_var in $ac_precious_vars; do + eval ac_old_set=\$ac_cv_env_${ac_var}_set + eval ac_new_set=\$ac_env_${ac_var}_set + eval ac_old_val=\$ac_cv_env_${ac_var}_value + eval ac_new_val=\$ac_env_${ac_var}_value + case $ac_old_set,$ac_new_set in + set,) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' was set to '$ac_old_val' in the previous run" >&5 +printf "%s\n" "$as_me: error: '$ac_var' was set to '$ac_old_val' in the previous run" >&2;} + ac_cache_corrupted=: ;; + ,set) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' was not set in the previous run" >&5 +printf "%s\n" "$as_me: error: '$ac_var' was not set in the previous run" >&2;} + ac_cache_corrupted=: ;; + ,);; + *) + if test "x$ac_old_val" != "x$ac_new_val"; then + # differences in whitespace do not lead to failure. + ac_old_val_w=`echo x $ac_old_val` + ac_new_val_w=`echo x $ac_new_val` + if test "$ac_old_val_w" != "$ac_new_val_w"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' has changed since the previous run:" >&5 +printf "%s\n" "$as_me: error: '$ac_var' has changed since the previous run:" >&2;} + ac_cache_corrupted=: + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: warning: ignoring whitespace changes in '$ac_var' since the previous run:" >&5 +printf "%s\n" "$as_me: warning: ignoring whitespace changes in '$ac_var' since the previous run:" >&2;} + eval $ac_var=\$ac_old_val + fi + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: former value: '$ac_old_val'" >&5 +printf "%s\n" "$as_me: former value: '$ac_old_val'" >&2;} + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: current value: '$ac_new_val'" >&5 +printf "%s\n" "$as_me: current value: '$ac_new_val'" >&2;} + fi;; + esac + # Pass precious variables to config.status. + if test "$ac_new_set" = set; then + case $ac_new_val in + *\'*) ac_arg=$ac_var=`printf "%s\n" "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;; + *) ac_arg=$ac_var=$ac_new_val ;; + esac + case " $ac_configure_args " in + *" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy. + *) as_fn_append ac_configure_args " '$ac_arg'" ;; + esac + fi +done +if $ac_cache_corrupted; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5 +printf "%s\n" "$as_me: error: changes in the environment can compromise the build" >&2;} + as_fn_error $? "run '${MAKE-make} distclean' and/or 'rm $cache_file' + and start over" "$LINENO" 5 +fi +## -------------------- ## +## Main body of script. ## +## -------------------- ## + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +AMUSE_LOG_ENVVARS() + +# Pick up Conda env or virtualenv + + if test "x$VIRTUAL_ENV" != x +then : + + CFLAGS="$CFLAGS -I${VIRTUAL_ENV}/include" + CXXFLAGS="$CXXFLAGS -I${VIRTUAL_ENV}/include" + FFLAGS="$FFLAGS -I${VIRTUAL_ENV}/include" + FCFLAGS="$FCFLAGS -I${VIRTUAL_ENV}/include" + LDFLAGS="$LDFLAGS -L${VIRTUAL_ENV}/lib -Wl,-rpath,${VIRTUAL_ENV}/lib" + PKG_CONFIG_PATH="$VIRTUAL_ENV/lib/pkgconfig:$PKG_CONFIG_PATH" + +fi + + if test "x$CONDA_PREFIX" != x +then : + + # Conda does not set FCFLAGS, so we copy from FFLAGS here + FCFLAGS="$FFLAGS" + LDFLAGS="$LDFLAGS -L${CONDA_PREFIX}/lib -Wl,-rpath,${CONDA_PREFIX}/lib" + # Conda pkg-config includes this already, but in case we have one from + # the system... + PKG_CONFIG_PATH="$PKG_CONFIG_PATH:${CONDA_PREFIX}/lib/pkgconfig" + +fi + # Needs to be exported or the PKG_CHECK_MODULES macro won't see it + export PKG_CONFIG_PATH + + + +# Set CPU_COUNT + + + + # Make sure we can run config.sub. +$SHELL "${ac_aux_dir}config.sub" sun4 >/dev/null 2>&1 || + as_fn_error $? "cannot run $SHELL ${ac_aux_dir}config.sub" "$LINENO" 5 + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking build system type" >&5 +printf %s "checking build system type... " >&6; } +if test ${ac_cv_build+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_build_alias=$build_alias +test "x$ac_build_alias" = x && + ac_build_alias=`$SHELL "${ac_aux_dir}config.guess"` +test "x$ac_build_alias" = x && + as_fn_error $? "cannot guess build type; you must specify one" "$LINENO" 5 +ac_cv_build=`$SHELL "${ac_aux_dir}config.sub" $ac_build_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $ac_build_alias failed" "$LINENO" 5 + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_build" >&5 +printf "%s\n" "$ac_cv_build" >&6; } +case $ac_cv_build in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical build" "$LINENO" 5;; +esac +build=$ac_cv_build +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_build +shift +build_cpu=$1 +build_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +build_os=$* +IFS=$ac_save_IFS +case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking host system type" >&5 +printf %s "checking host system type... " >&6; } +if test ${ac_cv_host+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test "x$host_alias" = x; then + ac_cv_host=$ac_cv_build +else + ac_cv_host=`$SHELL "${ac_aux_dir}config.sub" $host_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $host_alias failed" "$LINENO" 5 +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_host" >&5 +printf "%s\n" "$ac_cv_host" >&6; } +case $ac_cv_host in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical host" "$LINENO" 5;; +esac +host=$ac_cv_host +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_host +shift +host_cpu=$1 +host_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +host_os=$* +IFS=$ac_save_IFS +case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for grep that handles long lines and -e" >&5 +printf %s "checking for grep that handles long lines and -e... " >&6; } +if test ${ac_cv_path_GREP+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -z "$GREP"; then + ac_path_GREP_found=false + # Loop through the user's path and test for each of PROGNAME-LIST + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_prog in grep ggrep + do + for ac_exec_ext in '' $ac_executable_extensions; do + ac_path_GREP="$as_dir$ac_prog$ac_exec_ext" + as_fn_executable_p "$ac_path_GREP" || continue +# Check for GNU ac_path_GREP and select it if it is found. + # Check for GNU $ac_path_GREP +case `"$ac_path_GREP" --version 2>&1` in #( +*GNU*) + ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;; +#( +*) + ac_count=0 + printf %s 0123456789 >"conftest.in" + while : + do + cat "conftest.in" "conftest.in" >"conftest.tmp" + mv "conftest.tmp" "conftest.in" + cp "conftest.in" "conftest.nl" + printf "%s\n" 'GREP' >> "conftest.nl" + "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break + diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break + as_fn_arith $ac_count + 1 && ac_count=$as_val + if test $ac_count -gt ${ac_path_GREP_max-0}; then + # Best one so far, save it but keep looking for a better one + ac_cv_path_GREP="$ac_path_GREP" + ac_path_GREP_max=$ac_count + fi + # 10*(2^10) chars as input seems more than enough + test $ac_count -gt 10 && break + done + rm -f conftest.in conftest.tmp conftest.nl conftest.out;; +esac + + $ac_path_GREP_found && break 3 + done + done + done +IFS=$as_save_IFS + if test -z "$ac_cv_path_GREP"; then + as_fn_error $? "no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5 + fi +else + ac_cv_path_GREP=$GREP +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_GREP" >&5 +printf "%s\n" "$ac_cv_path_GREP" >&6; } + GREP="$ac_cv_path_GREP" + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for egrep" >&5 +printf %s "checking for egrep... " >&6; } +if test ${ac_cv_path_EGREP+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if echo a | $GREP -E '(a|b)' >/dev/null 2>&1 + then ac_cv_path_EGREP="$GREP -E" + else + if test -z "$EGREP"; then + ac_path_EGREP_found=false + # Loop through the user's path and test for each of PROGNAME-LIST + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_prog in egrep + do + for ac_exec_ext in '' $ac_executable_extensions; do + ac_path_EGREP="$as_dir$ac_prog$ac_exec_ext" + as_fn_executable_p "$ac_path_EGREP" || continue +# Check for GNU ac_path_EGREP and select it if it is found. + # Check for GNU $ac_path_EGREP +case `"$ac_path_EGREP" --version 2>&1` in #( +*GNU*) + ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;; +#( +*) + ac_count=0 + printf %s 0123456789 >"conftest.in" + while : + do + cat "conftest.in" "conftest.in" >"conftest.tmp" + mv "conftest.tmp" "conftest.in" + cp "conftest.in" "conftest.nl" + printf "%s\n" 'EGREP' >> "conftest.nl" + "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break + diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break + as_fn_arith $ac_count + 1 && ac_count=$as_val + if test $ac_count -gt ${ac_path_EGREP_max-0}; then + # Best one so far, save it but keep looking for a better one + ac_cv_path_EGREP="$ac_path_EGREP" + ac_path_EGREP_max=$ac_count + fi + # 10*(2^10) chars as input seems more than enough + test $ac_count -gt 10 && break + done + rm -f conftest.in conftest.tmp conftest.nl conftest.out;; +esac + + $ac_path_EGREP_found && break 3 + done + done + done +IFS=$as_save_IFS + if test -z "$ac_cv_path_EGREP"; then + as_fn_error $? "no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5 + fi +else + ac_cv_path_EGREP=$EGREP +fi + + fi ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_EGREP" >&5 +printf "%s\n" "$ac_cv_path_EGREP" >&6; } + EGREP="$ac_cv_path_EGREP" + + EGREP_TRADITIONAL=$EGREP + ac_cv_path_EGREP_TRADITIONAL=$EGREP + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking the number of available CPUs" >&5 +printf %s "checking the number of available CPUs... " >&6; } + CPU_COUNT="0" + + # Try generic methods + + # 'getconf' is POSIX utility, but '_NPROCESSORS_ONLN' and + # 'NPROCESSORS_ONLN' are platform-specific + command -v getconf >/dev/null 2>&1 && \ + CPU_COUNT=`getconf _NPROCESSORS_ONLN 2>/dev/null || getconf NPROCESSORS_ONLN 2>/dev/null` || CPU_COUNT="0" + if test "$CPU_COUNT" -gt "0" 2>/dev/null || ! command -v nproc >/dev/null 2>&1 +then : + : # empty +else case e in #( + e) # 'nproc' is part of GNU Coreutils and is widely available + CPU_COUNT=`OMP_NUM_THREADS='' nproc 2>/dev/null` || CPU_COUNT=`nproc 2>/dev/null` || CPU_COUNT="0" + ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null +then : + : # empty +else case e in #( + e) # Try platform-specific preferred methods + case $host_os in #( + *linux*) : + CPU_COUNT=`lscpu -p 2>/dev/null | $EGREP -e '^[0-9]+,' -c` || CPU_COUNT="0" ;; #( + *darwin*) : + CPU_COUNT=`sysctl -n hw.logicalcpu 2>/dev/null` || CPU_COUNT="0" ;; #( + freebsd*) : + command -v sysctl >/dev/null 2>&1 && CPU_COUNT=`sysctl -n kern.smp.cpus 2>/dev/null` || CPU_COUNT="0" ;; #( + netbsd*) : + command -v sysctl >/dev/null 2>&1 && CPU_COUNT=`sysctl -n hw.ncpuonline 2>/dev/null` || CPU_COUNT="0" ;; #( + solaris*) : + command -v psrinfo >/dev/null 2>&1 && CPU_COUNT=`psrinfo 2>/dev/null | $EGREP -e '^[0-9].*on-line' -c 2>/dev/null` || CPU_COUNT="0" ;; #( + mingw*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + msys*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + cygwin*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + *) : + ;; +esac ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null || ! command -v sysctl >/dev/null 2>&1 +then : + : # empty +else case e in #( + e) # Try less preferred generic method + # 'hw.ncpu' exist on many platforms, but not on GNU/Linux + CPU_COUNT=`sysctl -n hw.ncpu 2>/dev/null` || CPU_COUNT="0" + ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null +then : + : # empty +else case e in #( + e) # Try platform-specific fallback methods + # They can be less accurate and slower then preferred methods + case $host_os in #( + *linux*) : + CPU_COUNT=`$EGREP -e '^processor' -c /proc/cpuinfo 2>/dev/null` || CPU_COUNT="0" ;; #( + *darwin*) : + CPU_COUNT=`system_profiler SPHardwareDataType 2>/dev/null | $EGREP -i -e 'number of cores:'|cut -d : -f 2 -s|tr -d ' '` || CPU_COUNT="0" ;; #( + freebsd*) : + CPU_COUNT=`dmesg 2>/dev/null| $EGREP -e '^cpu[0-9]+: '|sort -u|$EGREP -e '^' -c` || CPU_COUNT="0" ;; #( + netbsd*) : + CPU_COUNT=`command -v cpuctl >/dev/null 2>&1 && cpuctl list 2>/dev/null| $EGREP -e '^[0-9]+ .* online ' -c` || \ + CPU_COUNT=`dmesg 2>/dev/null| $EGREP -e '^cpu[0-9]+ at'|sort -u|$EGREP -e '^' -c` || CPU_COUNT="0" ;; #( + solaris*) : + command -v kstat >/dev/null 2>&1 && CPU_COUNT=`kstat -m cpu_info -s state -p 2>/dev/null | $EGREP -c -e 'on-line'` || \ + CPU_COUNT=`kstat -m cpu_info 2>/dev/null | $EGREP -c -e 'module: cpu_info'` || CPU_COUNT="0" ;; #( + mingw*) : + if CPU_COUNT=`reg query 'HKLM\\Hardware\\Description\\System\\CentralProcessor' 2>/dev/null | $EGREP -e '\\\\[0-9]+$' -c` +then : + : # empty +else case e in #( + e) test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; +esac +fi ;; #( + msys*) : + test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; #( + cygwin*) : + test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; #( + *) : + ;; +esac ;; +esac +fi + if test "x$CPU_COUNT" != "x0" && test "$CPU_COUNT" -gt 0 2>/dev/null +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CPU_COUNT" >&5 +printf "%s\n" "$CPU_COUNT" >&6; } + +else case e in #( + e) CPU_COUNT="1" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unable to detect (assuming 1)" >&5 +printf "%s\n" "unable to detect (assuming 1)" >&6; } + ;; +esac +fi + + +# Find the compiler(s) +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu +if test -n "$ac_tool_prefix"; then + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_FC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$FC"; then + ac_cv_prog_FC="$FC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_FC="$ac_tool_prefix$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +FC=$ac_cv_prog_FC +if test -n "$FC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $FC" >&5 +printf "%s\n" "$FC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$FC" && break + done +fi +if test -z "$FC"; then + ac_ct_FC=$FC + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_FC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_FC"; then + ac_cv_prog_ac_ct_FC="$ac_ct_FC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_FC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_FC=$ac_cv_prog_ac_ct_FC +if test -n "$ac_ct_FC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_FC" >&5 +printf "%s\n" "$ac_ct_FC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$ac_ct_FC" && break +done + + if test "x$ac_ct_FC" = x; then + FC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + FC=$ac_ct_FC + fi +fi + + +# Provide some information about the compiler. +printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for Fortran compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +for ac_option in --version -v -V -qversion; do + { { ac_try="$ac_compiler $ac_option >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compiler $ac_option >&5") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + sed '10a\ +... rest of stderr output deleted ... + 10q' conftest.err >conftest.er1 + cat conftest.er1 >&5 + fi + rm -f conftest.er1 conftest.err + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +done +rm -f a.out + +cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the Fortran compiler works" >&5 +printf %s "checking whether the Fortran compiler works... " >&6; } +ac_link_default=`printf "%s\n" "$ac_link" | sed 's/ -o *conftest[^ ]*//'` + +# The possible output files: +ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*" + +ac_rmfiles= +for ac_file in $ac_files +do + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + * ) ac_rmfiles="$ac_rmfiles $ac_file";; + esac +done +rm -f $ac_rmfiles + +if { { ac_try="$ac_link_default" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link_default") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + # Autoconf-2.13 could set the ac_cv_exeext variable to 'no'. +# So ignore a value of 'no', otherwise this would lead to 'EXEEXT = no' +# in a Makefile. We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test ${ac_cv_exeext+y} && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an '-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else case e in #( + e) ac_file='' ;; +esac +fi +if test -z "$ac_file" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error 77 "Fortran compiler cannot create executables +See 'config.log' for more details" "$LINENO" 5; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for Fortran compiler default output file name" >&5 +printf %s "checking for Fortran compiler default output file name... " >&6; } +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5 +printf "%s\n" "$ac_file" >&6; } +ac_exeext=$ac_cv_exeext + +rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out +ac_clean_files=$ac_clean_files_save +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5 +printf %s "checking for suffix of executables... " >&6; } +if { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + # If both 'conftest.exe' and 'conftest' are 'present' (well, observable) +# catch 'conftest.exe'. For instance with Cygwin, 'ls conftest' will +# work properly (i.e., refer to 'conftest.exe'), while it won't with +# 'rm'. +for ac_file in conftest.exe conftest conftest.*; do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + break;; + * ) break;; + esac +done +else case e in #( + e) { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "cannot compute suffix of executables: cannot compile and link +See 'config.log' for more details" "$LINENO" 5; } ;; +esac +fi +rm -f conftest conftest$ac_cv_exeext +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5 +printf "%s\n" "$ac_cv_exeext" >&6; } + +rm -f conftest.$ac_ext +EXEEXT=$ac_cv_exeext +ac_exeext=$EXEEXT +cat > conftest.$ac_ext <<_ACEOF + program main + open(unit=9,file='conftest.out') + close(unit=9) + + end +_ACEOF +ac_clean_files="$ac_clean_files conftest.out" +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5 +printf %s "checking whether we are cross compiling... " >&6; } +if test "$cross_compiling" != yes; then + { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } + if { ac_try='./conftest$ac_cv_exeext' + { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; }; then + cross_compiling=no + else + if test "$cross_compiling" = maybe; then + cross_compiling=yes + else + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error 77 "cannot run Fortran compiled programs. +If you meant to cross compile, use '--host'. +See 'config.log' for more details" "$LINENO" 5; } + fi + fi +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5 +printf "%s\n" "$cross_compiling" >&6; } + +rm -f conftest.$ac_ext conftest$ac_cv_exeext \ + conftest.o conftest.obj conftest.out +ac_clean_files=$ac_clean_files_save +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5 +printf %s "checking for suffix of object files... " >&6; } +if test ${ac_cv_objext+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.o conftest.obj +if { { ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compile") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + for ac_file in conftest.o conftest.obj conftest.*; do + test -f "$ac_file" || continue; + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;; + *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'` + break;; + esac +done +else case e in #( + e) printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "cannot compute suffix of object files: cannot compile +See 'config.log' for more details" "$LINENO" 5; } ;; +esac +fi +rm -f conftest.$ac_cv_objext conftest.$ac_ext ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5 +printf "%s\n" "$ac_cv_objext" >&6; } +OBJEXT=$ac_cv_objext +ac_objext=$OBJEXT +# If we don't use '.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the compiler supports GNU Fortran" >&5 +printf %s "checking whether the compiler supports GNU Fortran... " >&6; } +if test ${ac_cv_fc_compiler_gnu+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat > conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + ac_compiler_gnu=yes +else case e in #( + e) ac_compiler_gnu=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +ac_cv_fc_compiler_gnu=$ac_compiler_gnu + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_fc_compiler_gnu" >&5 +printf "%s\n" "$ac_cv_fc_compiler_gnu" >&6; } +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + +ac_ext=$ac_save_ext +ac_test_FCFLAGS=${FCFLAGS+y} +ac_save_FCFLAGS=$FCFLAGS +FCFLAGS= +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether $FC accepts -g" >&5 +printf %s "checking whether $FC accepts -g... " >&6; } +if test ${ac_cv_prog_fc_g+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) FCFLAGS=-g +cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + ac_cv_prog_fc_g=yes +else case e in #( + e) ac_cv_prog_fc_g=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_fc_g" >&5 +printf "%s\n" "$ac_cv_prog_fc_g" >&6; } +if test $ac_test_FCFLAGS; then + FCFLAGS=$ac_save_FCFLAGS +elif test $ac_cv_prog_fc_g = yes; then + if test "x$ac_cv_fc_compiler_gnu" = xyes; then + FCFLAGS="-g -O2" + else + FCFLAGS="-g" + fi +else + if test "x$ac_cv_fc_compiler_gnu" = xyes; then + FCFLAGS="-O2" + else + FCFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + GFC=yes +else + GFC= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking if the fortran compiler supports iso c binding" >&5 +printf %s "checking if the fortran compiler supports iso c binding... " >&6; } +cat > conftest.$ac_ext <<_ACEOF + + + program conftest + use ISO_C_BINDING + integer, dimension(10) :: n + end + + +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + + FC_ISO_C_BINDINGS="yes" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ax_cv_fc_iso_c_bindings" >&5 +printf "%s\n" "$ax_cv_fc_iso_c_bindings" >&6; } + +else case e in #( + e) + FC_ISO_C_BINDINGS="no" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no, fortran codes and sockets or embedding will not work." >&5 +printf "%s\n" "no, fortran codes and sockets or embedding will not work." >&6; } + ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +# The intel compiler sometimes generates these work.pc and .pcl files +rm -f work.pc work.pcl +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +# Find tools for creating static libraries +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking target system type" >&5 +printf %s "checking target system type... " >&6; } +if test ${ac_cv_target+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test "x$target_alias" = x; then + ac_cv_target=$ac_cv_host +else + ac_cv_target=`$SHELL "${ac_aux_dir}config.sub" $target_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $target_alias failed" "$LINENO" 5 +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_target" >&5 +printf "%s\n" "$ac_cv_target" >&6; } +case $ac_cv_target in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical target" "$LINENO" 5;; +esac +target=$ac_cv_target +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_target +shift +target_cpu=$1 +target_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +target_os=$* +IFS=$ac_save_IFS +case $target_os in *\ *) target_os=`echo "$target_os" | sed 's/ /-/g'`;; esac + + +# The aliases save the names the user supplied, while $host etc. +# will get canonicalized. +test -n "$target_alias" && + test "$program_prefix$program_suffix$program_transform_name" = \ + NONENONEs,x,x, && + program_prefix=${target_alias}- +# Extract the first word of "$target_alias-ar", so it can be a program name with args. +set dummy $target_alias-ar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_AR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$AR"; then + ac_cv_prog_AR="$AR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_AR="$target_alias-ar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +AR=$ac_cv_prog_AR +if test -n "$AR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $AR" >&5 +printf "%s\n" "$AR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +if test -z "$ac_cv_prog_AR"; then + if test "$build" = "$target"; then + ac_ct_AR=$AR + # Extract the first word of "ar", so it can be a program name with args. +set dummy ar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_AR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_AR"; then + ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_AR="ar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + test -z "$ac_cv_prog_ac_ct_AR" && ac_cv_prog_ac_ct_AR=":" +fi ;; +esac +fi +ac_ct_AR=$ac_cv_prog_ac_ct_AR +if test -n "$ac_ct_AR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_AR" >&5 +printf "%s\n" "$ac_ct_AR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + AR=$ac_ct_AR + else + AR=":" + fi +else + AR="$ac_cv_prog_AR" +fi + +if test $AR = ":" +then : + as_fn_error $? "ar command not found." "$LINENO" 5 +fi + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_RANLIB+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5 +printf "%s\n" "$RANLIB" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_RANLIB+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5 +printf "%s\n" "$ac_ct_RANLIB" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +if test $RANLIB = ":" +then : + as_fn_error $? "ranlib command not found." "$LINENO" 5 +fi + +# Find something to download things with + + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}wget", so it can be a program name with args. +set dummy ${ac_tool_prefix}wget; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_WGET+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$WGET"; then + ac_cv_prog_WGET="$WGET" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_WGET="${ac_tool_prefix}wget" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +WGET=$ac_cv_prog_WGET +if test -n "$WGET"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $WGET" >&5 +printf "%s\n" "$WGET" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_WGET"; then + ac_ct_WGET=$WGET + # Extract the first word of "wget", so it can be a program name with args. +set dummy wget; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_WGET+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_WGET"; then + ac_cv_prog_ac_ct_WGET="$ac_ct_WGET" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_WGET="wget" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_WGET=$ac_cv_prog_ac_ct_WGET +if test -n "$ac_ct_WGET"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_WGET" >&5 +printf "%s\n" "$ac_ct_WGET" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_WGET" = x; then + WGET="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + WGET=$ac_ct_WGET + fi +else + WGET="$ac_cv_prog_WGET" +fi + + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}curl", so it can be a program name with args. +set dummy ${ac_tool_prefix}curl; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CURL+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CURL"; then + ac_cv_prog_CURL="$CURL" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CURL="${ac_tool_prefix}curl" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CURL=$ac_cv_prog_CURL +if test -n "$CURL"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CURL" >&5 +printf "%s\n" "$CURL" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CURL"; then + ac_ct_CURL=$CURL + # Extract the first word of "curl", so it can be a program name with args. +set dummy curl; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CURL+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CURL"; then + ac_cv_prog_ac_ct_CURL="$ac_ct_CURL" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CURL="curl" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CURL=$ac_cv_prog_ac_ct_CURL +if test -n "$ac_ct_CURL"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CURL" >&5 +printf "%s\n" "$ac_ct_CURL" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CURL" = x; then + CURL="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CURL=$ac_ct_CURL + fi +else + CURL="$ac_cv_prog_CURL" +fi + + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for a wget or curl to download files with" >&5 +printf %s "checking for a wget or curl to download files with... " >&6; } + if test "x$WGET" != "x" + then + # The MESA SDK server rejects wget, this is the official work-around + DOWNLOAD="$WGET --progress=bar:force:noscroll --user-agent='' -O -" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + if test "x$CURL" != "x" + then + DOWNLOAD="$CURL -L" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + fi + fi + + + + + +# Find AMUSE libraries + + + + + + + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="gcc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + if test "$as_dir$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $# != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir$ac_word${1+' '}$@" + fi +fi +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}clang", so it can be a program name with args. +set dummy ${ac_tool_prefix}clang; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}clang" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "clang", so it can be a program name with args. +set dummy clang; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="clang" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +fi + + +test -z "$CC" && { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "no acceptable C compiler found in \$PATH +See 'config.log' for more details" "$LINENO" 5; } + +# Provide some information about the compiler. +printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +for ac_option in --version -v -V -qversion -version; do + { { ac_try="$ac_compiler $ac_option >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compiler $ac_option >&5") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + sed '10a\ +... rest of stderr output deleted ... + 10q' conftest.err >conftest.er1 + cat conftest.er1 >&5 + fi + rm -f conftest.er1 conftest.err + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +done + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the compiler supports GNU C" >&5 +printf %s "checking whether the compiler supports GNU C... " >&6; } +if test ${ac_cv_c_compiler_gnu+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ +#ifndef __GNUC__ + choke me +#endif + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_compiler_gnu=yes +else case e in #( + e) ac_compiler_gnu=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +ac_cv_c_compiler_gnu=$ac_compiler_gnu + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5 +printf "%s\n" "$ac_cv_c_compiler_gnu" >&6; } +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test $ac_compiler_gnu = yes; then + GCC=yes +else + GCC= +fi +ac_test_CFLAGS=${CFLAGS+y} +ac_save_CFLAGS=$CFLAGS +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5 +printf %s "checking whether $CC accepts -g... " >&6; } +if test ${ac_cv_prog_cc_g+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_save_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + ac_cv_prog_cc_g=no + CFLAGS="-g" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_g=yes +else case e in #( + e) CFLAGS="" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + +else case e in #( + e) ac_c_werror_flag=$ac_save_c_werror_flag + CFLAGS="-g" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_g=yes +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext + ac_c_werror_flag=$ac_save_c_werror_flag ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5 +printf "%s\n" "$ac_cv_prog_cc_g" >&6; } +if test $ac_test_CFLAGS; then + CFLAGS=$ac_save_CFLAGS +elif test $ac_cv_prog_cc_g = yes; then + if test "$GCC" = yes; then + CFLAGS="-g -O2" + else + CFLAGS="-g" + fi +else + if test "$GCC" = yes; then + CFLAGS="-O2" + else + CFLAGS= + fi +fi +ac_prog_cc_stdc=no +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C11 features" >&5 +printf %s "checking for $CC option to enable C11 features... " >&6; } +if test ${ac_cv_prog_cc_c11+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c11=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c11_program +_ACEOF +for ac_arg in '' -std=gnu11 +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c11=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c11" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c11" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c11" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c11" >&5 +printf "%s\n" "$ac_cv_prog_cc_c11" >&6; } + CC="$CC $ac_cv_prog_cc_c11" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c11 + ac_prog_cc_stdc=c11 ;; +esac +fi +fi +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C99 features" >&5 +printf %s "checking for $CC option to enable C99 features... " >&6; } +if test ${ac_cv_prog_cc_c99+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c99=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c99_program +_ACEOF +for ac_arg in '' -std=gnu99 -std=c99 -c99 -qlanglvl=extc1x -qlanglvl=extc99 -AC99 -D_STDC_C99= +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c99=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c99" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c99" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c99" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c99" >&5 +printf "%s\n" "$ac_cv_prog_cc_c99" >&6; } + CC="$CC $ac_cv_prog_cc_c99" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c99 + ac_prog_cc_stdc=c99 ;; +esac +fi +fi +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C89 features" >&5 +printf %s "checking for $CC option to enable C89 features... " >&6; } +if test ${ac_cv_prog_cc_c89+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c89=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c89_program +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c89=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c89" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c89" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5 +printf "%s\n" "$ac_cv_prog_cc_c89" >&6; } + CC="$CC $ac_cv_prog_cc_c89" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c89 + ac_prog_cc_stdc=c89 ;; +esac +fi +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + + + + + + + +if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}pkg-config", so it can be a program name with args. +set dummy ${ac_tool_prefix}pkg-config; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_path_PKG_CONFIG+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) case $PKG_CONFIG in + [\\/]* | ?:[\\/]*) + ac_cv_path_PKG_CONFIG="$PKG_CONFIG" # Let the user override the test with a path. + ;; + *) + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_path_PKG_CONFIG="$as_dir$ac_word$ac_exec_ext" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + ;; +esac ;; +esac +fi +PKG_CONFIG=$ac_cv_path_PKG_CONFIG +if test -n "$PKG_CONFIG"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $PKG_CONFIG" >&5 +printf "%s\n" "$PKG_CONFIG" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_path_PKG_CONFIG"; then + ac_pt_PKG_CONFIG=$PKG_CONFIG + # Extract the first word of "pkg-config", so it can be a program name with args. +set dummy pkg-config; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_path_ac_pt_PKG_CONFIG+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) case $ac_pt_PKG_CONFIG in + [\\/]* | ?:[\\/]*) + ac_cv_path_ac_pt_PKG_CONFIG="$ac_pt_PKG_CONFIG" # Let the user override the test with a path. + ;; + *) + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_path_ac_pt_PKG_CONFIG="$as_dir$ac_word$ac_exec_ext" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + ;; +esac ;; +esac +fi +ac_pt_PKG_CONFIG=$ac_cv_path_ac_pt_PKG_CONFIG +if test -n "$ac_pt_PKG_CONFIG"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_pt_PKG_CONFIG" >&5 +printf "%s\n" "$ac_pt_PKG_CONFIG" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_pt_PKG_CONFIG" = x; then + PKG_CONFIG="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + PKG_CONFIG=$ac_pt_PKG_CONFIG + fi +else + PKG_CONFIG="$ac_cv_path_PKG_CONFIG" +fi + +fi +if test -n "$PKG_CONFIG"; then + _pkg_min_version=0.9.0 + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking pkg-config is at least version $_pkg_min_version" >&5 +printf %s "checking pkg-config is at least version $_pkg_min_version... " >&6; } + if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + PKG_CONFIG="" + fi +fi + + + amuse_save_LIBS="$LIBS" + amuse_save_LIB_CFLAGS="$FORSOCKETS_CFLAGS" + amuse_save_LIB_LIBS="$FORSOCKETS_LIBS" + amuse_save_PKG_CONFIG_PATH="$PKG_CONFIG_PATH" + + # If we have an active virtualenv, make sure pkg-config searches it + if test "a${VIRTUAL_ENV}" != "a" + then + PKG_CONFIG_PATH="${VIRTUAL_ENV}/lib/pkgconfig:${PKG_CONFIG_PATH}" + fi + + # All AMUSE libs export C symbols + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + # Search for the library, first directly then fall back to pkg-config + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for library containing forsockets_close" >&5 +printf %s "checking for library containing forsockets_close... " >&6; } +if test ${ac_cv_search_forsockets_close+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_func_search_save_LIBS=$LIBS +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. + The 'extern "C"' is for builds by C++ compilers; + although this is not generally supported in C code supporting it here + has little cost and some practical benefit (sr 110532). */ +#ifdef __cplusplus +extern "C" +#endif +char forsockets_close (void); +int +main (void) +{ +return forsockets_close (); + ; + return 0; +} +_ACEOF +for ac_lib in '' forsockets +do + if test -z "$ac_lib"; then + ac_res="none required" + else + ac_res=-l$ac_lib + LIBS="-l$ac_lib $ac_func_search_save_LIBS" + fi + if ac_fn_c_try_link "$LINENO" +then : + ac_cv_search_forsockets_close=$ac_res +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext + if test ${ac_cv_search_forsockets_close+y} +then : + break +fi +done +if test ${ac_cv_search_forsockets_close+y} +then : + +else case e in #( + e) ac_cv_search_forsockets_close=no ;; +esac +fi +rm conftest.$ac_ext +LIBS=$ac_func_search_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_forsockets_close" >&5 +printf "%s\n" "$ac_cv_search_forsockets_close" >&6; } +ac_res=$ac_cv_search_forsockets_close +if test "$ac_res" != no +then : + test "$ac_res" = "none required" || LIBS="$ac_res $LIBS" + + FOUND_FORSOCKETS="yes" + FORSOCKETS_LIBS="$LIBS" + FORSOCKETS_CFLAGS="" + +else case e in #( + e) + +pkg_failed=no +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for FORSOCKETS" >&5 +printf %s "checking for FORSOCKETS... " >&6; } + +if test -n "$FORSOCKETS_CFLAGS"; then + pkg_cv_FORSOCKETS_CFLAGS="$FORSOCKETS_CFLAGS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"forsockets\""; } >&5 + ($PKG_CONFIG --exists --print-errors "forsockets") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then + pkg_cv_FORSOCKETS_CFLAGS=`$PKG_CONFIG --cflags "forsockets" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes +else + pkg_failed=yes +fi + else + pkg_failed=untried +fi +if test -n "$FORSOCKETS_LIBS"; then + pkg_cv_FORSOCKETS_LIBS="$FORSOCKETS_LIBS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"forsockets\""; } >&5 + ($PKG_CONFIG --exists --print-errors "forsockets") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then + pkg_cv_FORSOCKETS_LIBS=`$PKG_CONFIG --libs "forsockets" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes +else + pkg_failed=yes +fi + else + pkg_failed=untried +fi + + + +if test $pkg_failed = yes; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + +if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then + _pkg_short_errors_supported=yes +else + _pkg_short_errors_supported=no +fi + if test $_pkg_short_errors_supported = yes; then + FORSOCKETS_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "forsockets" 2>&1` + else + FORSOCKETS_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "forsockets" 2>&1` + fi + # Put the nasty error message in config.log where it belongs + echo "$FORSOCKETS_PKG_ERRORS" >&5 + + + FOUND_FORSOCKETS="no" + +elif test $pkg_failed = untried; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + + FOUND_FORSOCKETS="no" + +else + FORSOCKETS_CFLAGS=$pkg_cv_FORSOCKETS_CFLAGS + FORSOCKETS_LIBS=$pkg_cv_FORSOCKETS_LIBS + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + + FOUND_FORSOCKETS="yes" + +fi + ;; +esac +fi + + + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + PKG_CONFIG_PATH="$amuse_save_PKG_CONFIG_PATH" + LIBS="$amuse_save_LIBS" + + # If we have an active CONDA environment, assume that the lib is coming from + # there and add an additional flag so that .mod files can be found. Only really + # needed for stopcond and forsockets, and hopefully conda-forge will give us a + # better solution soon. + if test "${FOUND_FORSOCKETS}" == "yes" -a "x$CONDA_PREFIX" != "x" + then + FORSOCKETS_CFLAGS="${FORSOCKETS_CFLAGS} -I${CONDA_PREFIX}/include" + fi + + # If the user overrode the variables, go with what they set instead of + # what we just detected. + if test "x$amuse_save_LIB_CFLAGS" != "x" +then : + + FORSOCKETS_CFLAGS="$amuse_save_LIB_CFLAGS" + +fi + if test "x$amuse_save_LIB_LIBS" != "x" +then : + + FORSOCKETS_LIBS="$amuse_save_LIB_LIBS" + +fi + + + + + + + + +# Find external dependencies +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + + + + + + + + for ac_prog in mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_MPIFC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$MPIFC"; then + ac_cv_prog_MPIFC="$MPIFC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_MPIFC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +MPIFC=$ac_cv_prog_MPIFC +if test -n "$MPIFC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $MPIFC" >&5 +printf "%s\n" "$MPIFC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$MPIFC" && break +done +test -n "$MPIFC" || MPIFC="$FC" + + ax_mpi_save_FC="$FC" + FC="$MPIFC" + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking checking MPI Fortran flags" >&5 +printf %s "checking checking MPI Fortran flags... " >&6; } + ax_mpi_fc_flags="`$MPIFC -showme:compile 2>/dev/null| cut -d\ -f2-`" + ax_mpi_fc_libs="`$MPIFC -showme:link 2>/dev/null| cut -d\ -f2-`" + if test "x$ax_mpi_fc_flags" = "x" +then : + + ax_mpi_fc_flags="`$MPIFC -show -c 2>/dev/null| cut -d\ -f2-|sed s/-c\ //`" + ax_mpi_fc_libs="`$MPIFC -show 2>/dev/null| cut -d\ -f2-`" + if test "x$ax_mpi_fc_flags" = "x" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: could not determine c flags from show functions" >&5 +printf "%s\n" "could not determine c flags from show functions" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: flags found" >&5 +printf "%s\n" "flags found" >&6; } ;; +esac +fi + + +else case e in #( + e) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: flags found" >&5 +printf "%s\n" "flags found" >&6; } ;; +esac +fi + MPI_FCFLAGS="$ax_mpi_fc_flags" + MPI_FCLIBS="$ax_mpi_fc_libs" + + + + +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init" >&5 +printf %s "checking for MPI_Init... " >&6; } + cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + MPILIBS=" " + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +fi + + if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lfmpi" >&5 +printf %s "checking for MPI_Init in -lfmpi... " >&6; } +if test ${ac_cv_lib_fmpi_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lfmpi $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_fmpi_MPI_Init=yes +else case e in #( + e) ac_cv_lib_fmpi_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_fmpi_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_fmpi_MPI_Init" >&6; } +if test "x$ac_cv_lib_fmpi_MPI_Init" = xyes +then : + MPILIBS="-lfmpi" +fi + + fi + if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpichf90" >&5 +printf %s "checking for MPI_Init in -lmpichf90... " >&6; } +if test ${ac_cv_lib_mpichf90_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpichf90 $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpichf90_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpichf90_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpichf90_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpichf90_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpichf90_MPI_Init" = xyes +then : + MPILIBS="-lmpichf90" +fi + + fi + + +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpi" >&5 +printf %s "checking for MPI_Init in -lmpi... " >&6; } +if test ${ac_cv_lib_mpi_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpi $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpi_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpi_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpi_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpi_MPI_Init" = xyes +then : + MPILIBS="-lmpi" +fi + +fi +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpich" >&5 +printf %s "checking for MPI_Init in -lmpich... " >&6; } +if test ${ac_cv_lib_mpich_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpich $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpich_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpich_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpich_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpich_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpich_MPI_Init" = xyes +then : + MPILIBS="-lmpich" +fi + +fi + +if test x != x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for mpif.h" >&5 +printf %s "checking for mpif.h... " >&6; } + cat > conftest.$ac_ext <<_ACEOF + program main + include 'mpif.h' + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } +else case e in #( + e) MPILIBS="" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +fi + +FC="$ax_mpi_save_FC" + + + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x = x"$MPILIBS"; then + + : +else + +printf "%s\n" "#define HAVE_MPI 1" >>confdefs.h + + : +fi + + +# TODO: it looks like Krome can use Intel MKL, and conda-forge packages it + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +# Generate output +ac_config_files="$ac_config_files config.mk" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. If it contains results you don't +# want to keep, you may remove or edit it. +# +# config.status only pays attention to the cache file if you give it +# the --recheck option to rerun configure. +# +# 'ac_cv_env_foo' variables (set or unset) will be overridden when +# loading this file, other *unset* 'ac_cv_foo' will be assigned the +# following values. + +_ACEOF + +# The following way of writing the cache mishandles newlines in values, +# but we know of no workaround that is simple, portable, and efficient. +# So, we kill variables containing newlines. +# Ultrix sh set writes to stderr and can't be redirected directly, +# and sets the high bit in the cache file unless we assign to the vars. +( + for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do + eval ac_val=\$$ac_var + case $ac_val in #( + *${as_nl}*) + case $ac_var in #( + *_cv_*) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5 +printf "%s\n" "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; + esac + case $ac_var in #( + _ | IFS | as_nl) ;; #( + BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( + *) { eval $ac_var=; unset $ac_var;} ;; + esac ;; + esac + done + + (set) 2>&1 | + case $as_nl`(ac_space=' '; set) 2>&1` in #( + *${as_nl}ac_space=\ *) + # 'set' does not quote correctly, so add quotes: double-quote + # substitution turns \\\\ into \\, and sed turns \\ into \. + sed -n \ + "s/'/'\\\\''/g; + s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p" + ;; #( + *) + # 'set' quotes correctly as required by POSIX, so do not add quotes. + sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" + ;; + esac | + sort +) | + sed ' + /^ac_cv_env_/b end + t clear + :clear + s/^\([^=]*\)=\(.*[{}].*\)$/test ${\1+y} || &/ + t end + s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/ + :end' >>confcache +if diff "$cache_file" confcache >/dev/null 2>&1; then :; else + if test -w "$cache_file"; then + if test "x$cache_file" != "x/dev/null"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5 +printf "%s\n" "$as_me: updating cache $cache_file" >&6;} + if test ! -f "$cache_file" || test -h "$cache_file"; then + cat confcache >"$cache_file" + else + case $cache_file in #( + */* | ?:*) + mv -f confcache "$cache_file"$$ && + mv -f "$cache_file"$$ "$cache_file" ;; #( + *) + mv -f confcache "$cache_file" ;; + esac + fi + fi + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5 +printf "%s\n" "$as_me: not updating unwritable cache $cache_file" >&6;} + fi +fi +rm -f confcache + +test "x$prefix" = xNONE && prefix=$ac_default_prefix +# Let make expand exec_prefix. +test "x$exec_prefix" = xNONE && exec_prefix='${prefix}' + +# Transform confdefs.h into DEFS. +# Protect against shell expansion while executing Makefile rules. +# Protect against Makefile macro expansion. +# +# If the first sed substitution is executed (which looks for macros that +# take arguments), then branch to the quote section. Otherwise, +# look for a macro that doesn't take arguments. +ac_script=' +:mline +/\\$/{ + N + s,\\\n,, + b mline +} +t clear +:clear +s/^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*([^)]*)\)[ ]*\(.*\)/-D\1=\2/g +t quote +s/^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)/-D\1=\2/g +t quote +b any +:quote +s/[][ `~#$^&*(){}\\|;'\''"<>?]/\\&/g +s/\$/$$/g +H +:any +${ + g + s/^\n// + s/\n/ /g + p +} +' +DEFS=`sed -n "$ac_script" confdefs.h` + + +ac_libobjs= +ac_ltlibobjs= +U= +for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue + # 1. Remove the extension, and $U if already installed. + ac_script='s/\$U\././;s/\.o$//;s/\.obj$//' + ac_i=`printf "%s\n" "$ac_i" | sed "$ac_script"` + # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR + # will be set to the directory where LIBOBJS objects are built. + as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext" + as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo' +done +LIBOBJS=$ac_libobjs + +LTLIBOBJS=$ac_ltlibobjs + + + +: "${CONFIG_STATUS=./config.status}" +ac_write_fail=0 +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files $CONFIG_STATUS" +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5 +printf "%s\n" "$as_me: creating $CONFIG_STATUS" >&6;} +as_write_fail=0 +cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1 +#! $SHELL +# Generated by $as_me. +# Run this file to recreate the current configuration. +# Compiler output produced by configure, useful for debugging +# configure, is in config.log if it exists. + +debug=false +ac_cs_recheck=false +ac_cs_silent=false + +SHELL=\${CONFIG_SHELL-$SHELL} +export SHELL +_ASEOF +cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1 +## -------------------- ## +## M4sh Initialization. ## +## -------------------- ## + +# Be more Bourne compatible +DUALCASE=1; export DUALCASE # for MKS sh +if test ${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which + # is contrary to our usage. Disable this feature. + alias -g '${1+"$@"}'='"$@"' + setopt NO_GLOB_SUBST +else case e in #( + e) case `(set -o) 2>/dev/null` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi + + + +# Reset variables that may have inherited troublesome values from +# the environment. + +# IFS needs to be set, to space, tab, and newline, in precisely that order. +# (If _AS_PATH_WALK were called with IFS unset, it would have the +# side effect of setting IFS to empty, thus disabling word splitting.) +# Quoting is to prevent editors from complaining about space-tab. +as_nl=' +' +export as_nl +IFS=" "" $as_nl" + +PS1='$ ' +PS2='> ' +PS4='+ ' + +# Ensure predictable behavior from utilities with locale-dependent output. +LC_ALL=C +export LC_ALL +LANGUAGE=C +export LANGUAGE + +# We cannot yet rely on "unset" to work, but we need these variables +# to be unset--not just set to an empty or harmless value--now, to +# avoid bugs in old shells (e.g. pre-3.0 UWIN ksh). 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"cannot create directory $as_dir" + + +} # as_fn_mkdir_p +if mkdir -p . 2>/dev/null; then + as_mkdir_p='mkdir -p "$as_dir"' +else + test -d ./-p && rmdir ./-p + as_mkdir_p=false +fi + + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p +as_test_x='test -x' +as_executable_p=as_fn_executable_p + +# Sed expression to map a string onto a valid CPP name. +as_sed_cpp="y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g" +as_tr_cpp="eval sed '$as_sed_cpp'" # deprecated + +# Sed expression to map a string onto a valid variable name. +as_sed_sh="y%*+%pp%;s%[^_$as_cr_alnum]%_%g" +as_tr_sh="eval sed '$as_sed_sh'" # deprecated + + +exec 6>&1 +## ----------------------------------- ## +## Main body of $CONFIG_STATUS script. ## +## ----------------------------------- ## +_ASEOF +test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1 + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +# Save the log message, to keep $0 and so on meaningful, and to +# report actual input values of CONFIG_FILES etc. instead of their +# values after options handling. +ac_log=" +This file was extended by amuse-krome $as_me 1.0, which was +generated by GNU Autoconf 2.72. Invocation command line was + + CONFIG_FILES = $CONFIG_FILES + CONFIG_HEADERS = $CONFIG_HEADERS + CONFIG_LINKS = $CONFIG_LINKS + CONFIG_COMMANDS = $CONFIG_COMMANDS + $ $0 $@ + +on `(hostname || uname -n) 2>/dev/null | sed 1q` +" + +_ACEOF + +case $ac_config_files in *" +"*) set x $ac_config_files; shift; ac_config_files=$*;; +esac + + + +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +# Files that config.status was made for. +config_files="$ac_config_files" + +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +ac_cs_usage="\ +'$as_me' instantiates files and other configuration actions +from templates according to the current configuration. Unless the files +and actions are specified as TAGs, all are instantiated by default. + +Usage: $0 [OPTION]... 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"missing file argument" ;; + esac + as_fn_append CONFIG_FILES " '$ac_optarg'" + ac_need_defaults=false;; + --he | --h | --help | --hel | -h ) + printf "%s\n" "$ac_cs_usage"; exit ;; + -q | -quiet | --quiet | --quie | --qui | --qu | --q \ + | -silent | --silent | --silen | --sile | --sil | --si | --s) + ac_cs_silent=: ;; + + # This is an error. + -*) as_fn_error $? "unrecognized option: '$1' +Try '$0 --help' for more information." ;; + + *) as_fn_append ac_config_targets " $1" + ac_need_defaults=false ;; + + esac + shift +done + +ac_configure_extra_args= + +if $ac_cs_silent; then + exec 6>/dev/null + ac_configure_extra_args="$ac_configure_extra_args --silent" +fi + +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +if \$ac_cs_recheck; then + set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion + shift + \printf "%s\n" "running CONFIG_SHELL=$SHELL \$*" >&6 + CONFIG_SHELL='$SHELL' + export CONFIG_SHELL + exec "\$@" +fi + +_ACEOF +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +exec 5>>config.log +{ + echo + sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX +## Running $as_me. ## +_ASBOX + printf "%s\n" "$ac_log" +} >&5 + +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 + +# Handling of arguments. +for ac_config_target in $ac_config_targets +do + case $ac_config_target in + "config.mk") CONFIG_FILES="$CONFIG_FILES config.mk" ;; + + *) as_fn_error $? "invalid argument: '$ac_config_target'" "$LINENO" 5;; + esac +done + + +# If the user did not use the arguments to specify the items to instantiate, +# then the envvar interface is used. Set only those that are not. +# We use the long form for the default assignment because of an extremely +# bizarre bug on SunOS 4.1.3. +if $ac_need_defaults; then + test ${CONFIG_FILES+y} || CONFIG_FILES=$config_files +fi + +# Have a temporary directory for convenience. Make it in the build tree +# simply because there is no reason against having it here, and in addition, +# creating and moving files from /tmp can sometimes cause problems. +# Hook for its removal unless debugging. +# Note that there is a small window in which the directory will not be cleaned: +# after its creation but before its name has been assigned to '$tmp'. +$debug || +{ + tmp= ac_tmp= + trap 'exit_status=$? + : "${ac_tmp:=$tmp}" + { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status +' 0 + trap 'as_fn_exit 1' 1 2 13 15 +} +# Create a (secure) tmp directory for tmp files. + +{ + tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` && + test -d "$tmp" +} || +{ + tmp=./conf$$-$RANDOM + (umask 077 && mkdir "$tmp") +} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5 +ac_tmp=$tmp + +# Set up the scripts for CONFIG_FILES section. +# No need to generate them if there are no CONFIG_FILES. +# This happens for instance with './config.status config.h'. +if test -n "$CONFIG_FILES"; then + + +ac_cr=`echo X | tr X '\015'` +# On cygwin, bash can eat \r inside `` if the user requested igncr. +# But we know of no other shell where ac_cr would be empty at this +# point, so we can use a bashism as a fallback. +if test "x$ac_cr" = x; then + eval ac_cr=\$\'\\r\' +fi +ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' /dev/null` +if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then + ac_cs_awk_cr='\\r' +else + ac_cs_awk_cr=$ac_cr +fi + +echo 'BEGIN {' >"$ac_tmp/subs1.awk" && +_ACEOF + + +{ + echo "cat >conf$$subs.awk <<_ACEOF" && + echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' && + echo "_ACEOF" +} >conf$$subs.sh || + as_fn_error $? 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"could not setup config files machinery" "$LINENO" 5 +_ACEOF + +# VPATH may cause trouble with some makes, so we remove sole $(srcdir), +# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and +# trailing colons and then remove the whole line if VPATH becomes empty +# (actually we leave an empty line to preserve line numbers). +if test "x$srcdir" = x.; then + ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{ +h +s/// +s/^/:/ +s/[ ]*$/:/ +s/:\$(srcdir):/:/g +s/:\${srcdir}:/:/g +s/:@srcdir@:/:/g +s/^:*// +s/:*$// +x +s/\(=[ ]*\).*/\1/ +G +s/\n// +s/^[^=]*=[ ]*$// +}' +fi + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +fi # test -n "$CONFIG_FILES" + + +eval set X " :F $CONFIG_FILES " +shift +for ac_tag +do + case $ac_tag in + :[FHLC]) ac_mode=$ac_tag; continue;; + esac + case $ac_mode$ac_tag in + :[FHL]*:*);; + :L* | :C*:*) as_fn_error $? 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Generated by config.status. */ + configure_input='Generated from '` + printf "%s\n" "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g' + `' by configure.' + if test x"$ac_file" != x-; then + configure_input="$ac_file. $configure_input" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: creating $ac_file" >&5 +printf "%s\n" "$as_me: creating $ac_file" >&6;} + fi + # Neutralize special characters interpreted by sed in replacement strings. + case $configure_input in #( + *\&* | *\|* | *\\* ) + ac_sed_conf_input=`printf "%s\n" "$configure_input" | + sed 's/[\\\\&|]/\\\\&/g'`;; #( + *) ac_sed_conf_input=$configure_input;; + esac + + case $ac_tag in + *:-:* | *:-) cat >"$ac_tmp/stdin" \ + || as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;; + esac + ;; + esac + + ac_dir=`$as_dirname -- "$ac_file" || +$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$ac_file" : 'X\(//\)[^/]' \| \ + X"$ac_file" : 'X\(//\)$' \| \ + X"$ac_file" : 'X\(/\)' \| . 2>/dev/null || +printf "%s\n" X"$ac_file" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + as_dir="$ac_dir"; as_fn_mkdir_p + ac_builddir=. + +case "$ac_dir" in +.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;; +*) + ac_dir_suffix=/`printf "%s\n" "$ac_dir" | sed 's|^\.[\\/]||'` + # A ".." for each directory in $ac_dir_suffix. + ac_top_builddir_sub=`printf "%s\n" "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'` + case $ac_top_builddir_sub in + "") ac_top_builddir_sub=. ac_top_build_prefix= ;; + *) ac_top_build_prefix=$ac_top_builddir_sub/ ;; + esac ;; +esac +ac_abs_top_builddir=$ac_pwd +ac_abs_builddir=$ac_pwd$ac_dir_suffix +# for backward compatibility: +ac_top_builddir=$ac_top_build_prefix + +case $srcdir in + .) # We are building in place. + ac_srcdir=. + ac_top_srcdir=$ac_top_builddir_sub + ac_abs_top_srcdir=$ac_pwd ;; + [\\/]* | ?:[\\/]* ) # Absolute name. + ac_srcdir=$srcdir$ac_dir_suffix; + ac_top_srcdir=$srcdir + ac_abs_top_srcdir=$srcdir ;; + *) # Relative name. + ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix + ac_top_srcdir=$ac_top_build_prefix$srcdir + ac_abs_top_srcdir=$ac_pwd/$srcdir ;; +esac +ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix + + + case $ac_mode in + :F) + # + # CONFIG_FILE + # + +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +# If the template does not know about datarootdir, expand it. +# FIXME: This hack should be removed a few years after 2.60. +ac_datarootdir_hack=; ac_datarootdir_seen= +ac_sed_dataroot=' +/datarootdir/ { + p + q +} +/@datadir@/p +/@docdir@/p +/@infodir@/p +/@localedir@/p +/@mandir@/p' +case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in +*datarootdir*) ac_datarootdir_seen=yes;; +*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5 +printf "%s\n" "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;} +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 + ac_datarootdir_hack=' + s&@datadir@&$datadir&g + s&@docdir@&$docdir&g + s&@infodir@&$infodir&g + s&@localedir@&$localedir&g + s&@mandir@&$mandir&g + s&\\\${datarootdir}&$datarootdir&g' ;; +esac +_ACEOF + +# Neutralize VPATH when '$srcdir' = '.'. +# Shell code in configure.ac might set extrasub. +# FIXME: do we really want to maintain this feature? +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +ac_sed_extra="$ac_vpsub +$extrasub +_ACEOF +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +:t +/@[a-zA-Z_][a-zA-Z_0-9]*@/!b +s|@configure_input@|$ac_sed_conf_input|;t t +s&@top_builddir@&$ac_top_builddir_sub&;t t +s&@top_build_prefix@&$ac_top_build_prefix&;t t +s&@srcdir@&$ac_srcdir&;t t +s&@abs_srcdir@&$ac_abs_srcdir&;t t +s&@top_srcdir@&$ac_top_srcdir&;t t +s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t +s&@builddir@&$ac_builddir&;t t +s&@abs_builddir@&$ac_abs_builddir&;t t +s&@abs_top_builddir@&$ac_abs_top_builddir&;t t +$ac_datarootdir_hack +" +eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \ + >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5 + +test -z "$ac_datarootdir_hack$ac_datarootdir_seen" && + { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } && + { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \ + "$ac_tmp/out"`; test -z "$ac_out"; } && + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable 'datarootdir' +which seems to be undefined. Please make sure it is defined" >&5 +printf "%s\n" "$as_me: WARNING: $ac_file contains a reference to the variable 'datarootdir' +which seems to be undefined. Please make sure it is defined" >&2;} + + rm -f "$ac_tmp/stdin" + case $ac_file in + -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";; + *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";; + esac \ + || as_fn_error $? "could not create $ac_file" "$LINENO" 5 + ;; + + + + esac + +done # for ac_tag + + +as_fn_exit 0 +_ACEOF +ac_clean_files=$ac_clean_files_save + +test $ac_write_fail = 0 || + as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5 + + +# configure is writing to config.log, and then calls config.status. +# config.status does its own redirection, appending to config.log. +# Unfortunately, on DOS this fails, as config.log is still kept open +# by configure, so config.status won't be able to write to it; its +# output is simply discarded. So we exec the FD to /dev/null, +# effectively closing config.log, so it can be properly (re)opened and +# appended to by config.status. When coming back to configure, we +# need to make the FD available again. +if test "$no_create" != yes; then + ac_cs_success=: + ac_config_status_args= + test "$silent" = yes && + ac_config_status_args="$ac_config_status_args --quiet" + exec 5>/dev/null + $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false + exec 5>>config.log + # Use ||, not &&, to avoid exiting from the if with $? = 1, which + # would make configure fail if this is the last instruction. + $ac_cs_success || as_fn_exit 1 +fi +if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 +printf "%s\n" "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} +fi + + + diff --git a/src/amuse_kromesph/support/configure.ac b/src/amuse_kromesph/support/configure.ac new file mode 100644 index 0000000000..fe6c4ac13f --- /dev/null +++ b/src/amuse_kromesph/support/configure.ac @@ -0,0 +1,46 @@ +AC_CONFIG_AUX_DIR([shared]) +AC_CONFIG_MACRO_DIRS([shared/m4]) + +AC_INIT([amuse-krome], [1.0]) + +AMUSE_LOG_ENVVARS() + +# Pick up Conda env or virtualenv +AMUSE_VENV() + +# Set CPU_COUNT +AX_COUNT_CPUS() +AC_SUBST(CPU_COUNT) + +# Find the compiler(s) +AC_PROG_FC() +AX_FC_ISO_C_BINDING() + +# Find tools for creating static libraries +AC_CHECK_TARGET_TOOL([AR], [ar], [:]) +AS_IF([test $AR = ":"], [AC_MSG_ERROR([ar command not found.])]) + +AC_PROG_RANLIB() +AS_IF([test $RANLIB = ":"], [AC_MSG_ERROR([ranlib command not found.])]) + +# Find something to download things with +AMUSE_DOWNLOAD() + + +# Find AMUSE libraries +AMUSE_LIB_FORSOCKETS() + + +# Find external dependencies +AC_LANG_PUSH([Fortran]) + +AX_MPI() + +# TODO: it looks like Krome can use Intel MKL, and conda-forge packages it + +AC_LANG_POP([Fortran]) + +# Generate output +AC_CONFIG_FILES([config.mk]) +AC_OUTPUT + diff --git a/src/amuse_kromesph/support/shared b/src/amuse_kromesph/support/shared new file mode 120000 index 0000000000..00817b0193 --- /dev/null +++ b/src/amuse_kromesph/support/shared @@ -0,0 +1 @@ +../../../support/shared \ No newline at end of file diff --git a/src/amuse_kromesph/tests/test_kromesph.py b/src/amuse_kromesph/tests/test_kromesph.py new file mode 100644 index 0000000000..2dddef5ce5 --- /dev/null +++ b/src/amuse_kromesph/tests/test_kromesph.py @@ -0,0 +1,606 @@ +from amuse.datamodel import Particles +from amuse.ic.molecular_cloud import new_molecular_cloud +from amuse.support.testing.amusetest import TestWithMPI +from amuse.units import units, nbody_system +from amuse_kromesph.interface import ( + KromeSph, KromeSphInterface, solar_abundances +) +import numpy as np + + +default_options = dict(redirection='none') + +try: + # dynamically retrieve the species list from Krome since it can change + # based on the compilation options + instance = KromeSph() + krome_species = [key for key in instance.species.keys()] + E_index = krome_species.index('E') + krome_species.pop(E_index) +except: + krome_species = None + +class TestKromeSphInterface(TestWithMPI): + + def test_initialization(self): + print("Test 1: initialization") + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + self.assertEqual(0, instance.cleanup_code()) + instance.stop() + + def test_getters_and_setters(self): + print("Test 2: getters and setters") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.e5 + u = 500 + gamma = 5/3 + mu = 1.23 + ion = 1.e-11 + id, err = instance.new_particle(dens, u, gamma, mu, ion) + + new_dens = 2e5 + new_u = 1000 + new_gamma = 10/3 + new_mu = 2.23 + new_ionrate = 1e-12 + + instance.set_density(1, new_dens) + instance.set_internal_energy(1, new_u) + instance.set_gamma(1, new_gamma) + instance.set_mu(1, new_mu) + instance.set_ionrate(1, new_ionrate) + + res = instance.get_density(1) + self.assertEquals(res['rho'], new_dens) + res = instance.get_internal_energy(1) + self.assertEquals(res['u'], new_u) + res = instance.get_gamma(1) + self.assertEquals(res['gamma'], new_gamma) + res = instance.get_mu(1) + self.assertEquals(res['mu'], new_mu) + res = instance.get_ionrate(1) + self.assertEquals(res['ionrate'], new_ionrate) + + instance.stop() + + def test_add_1_particle_and_get_state(self): + print("Test 3: add particle, get state") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.e5 + u = 500 + gamma = 5/3 + mu = 1.23 + ion = 1.e-11 + id, err = instance.new_particle(dens, u, gamma, mu, ion) + + self.assertEqual(err, 0) + + self.assertEqual(instance.commit_particles(), 0) + + dens_, u_, gamma_, mu_, ion_, err = instance.get_state(id) + + self.assertEqual(err, 0) + + self.assertEqual(dens_, dens) + self.assertEqual(u_, u) + self.assertEqual(gamma_, gamma) + self.assertEqual(mu_, mu_) + self.assertEqual(ion_, ion) + + self.assertEqual(0, instance.cleanup_code()) + + instance.stop() + + def test_add_2_particles_and_get_state(self): + print("Test 4: add 2 particles, get state") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = [1.e5, 2.e5] + u = [500, 550] + gamma = [5/3, 6/4] + mu = [1.23, 2.23] + ion = [1.e-11, 2.e-11] + ids, err = instance.new_particle(dens, u, gamma, mu, ion) + + self.assertEqual(err, 0) + + self.assertEqual(instance.commit_particles(), 0) + + for i in range(2): + dens_, u_, gamma_, mu_, ion_, err = instance.get_state(ids[i]) + + self.assertEqual(err, 0) + + self.assertEqual(dens_, dens[i]) + self.assertEqual(u_, u[i]) + self.assertEqual(gamma_, gamma[i]) + self.assertEqual(mu_, mu[i]) + self.assertEqual(ion_, ion[i]) + + self.assertEqual(0, instance.cleanup_code()) + + instance.stop() + + def test_add_100_particles_and_get_state(self): + print("Test 5: add 100 particles, get state") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.e5*np.random.random(100) + u = 500.*np.random.random(100) + gamma = 3/5.*np.random.random(100) + mu = 1.23*np.random.random(100) + ion = 1.e-11*np.random.random(100) + ids, err = instance.new_particle(dens, u, gamma, mu, ion) + + self.assertEqual(err, 0) + + self.assertEqual(instance.commit_particles(), 0) + + for i in range(100): + dens_, u_, gamma_, mu_, ion_, err = instance.get_state(ids[i]) + + self.assertEqual(err, 0) + + self.assertEqual(dens_, dens[i]) + self.assertEqual(u_, u[i]) + self.assertEqual(gamma_, gamma[i]) + self.assertEqual(mu_, mu[i]) + self.assertEqual(ion_, ion[i]) + + self.assertEqual(0, instance.cleanup_code()) + + instance.stop() + + def test_get_species(self): + print("Test 6: can we get species?") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + + first, last, err = instance.get_firstlast_species_index() + self.assertEqual(err, 0) + self.assertTrue(last-first > 0) + + for i in range(first, last+1): + name, err = instance.get_species_name(i) + print(name) + self.assertEqual(err, 0) + index, err = instance.get_species_index(name) + self.assertEqual(i, index) + + instance.stop() + + def test_add_and_remove_particles(self): + print("Test 7: add 100 particles, remove particles") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.e5*np.random.random(100) + u = 500.*np.random.random(100) + gamma = 3/5.*np.random.random(100) + mu = 1.23*np.random.random(100) + ion = 1.e-11*np.random.random(100) + ids, err = instance.new_particle(dens, u, gamma, mu, ion) + + self.assertEqual(err, 0) + + self.assertEqual(instance.commit_particles(), 0) + + for i in ids[:10]: + instance.delete_particle(i) + + instance.recommit_particles() + + for i in range(10, 100): + dens_, u_, gamma_, mu_, ion_, err = instance.get_state(ids[i]) + + self.assertEqual(err, 0) + + self.assertEqual(dens_, dens[i]) + self.assertEqual(u_, u[i]) + self.assertEqual(gamma_, gamma[i]) + self.assertEqual(mu_, mu[i]) + self.assertEqual(ion_, ion[i]) + + dens_, u_, gamma_, mu_, ion_, err = instance.get_state(ids[0]) + + self.assertEqual(err, -1) + + self.assertEqual(0, instance.cleanup_code()) + + instance.stop() + + def test_add_particle_and_set_abundances(self): + print("Test 8: add particle, set abundances") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.e5 + u = 500. + gamma = 5/3 + mu = 1.23 + ion = 1.e-11 + id, err = instance.new_particle(dens, u, gamma, mu, ion) + + instance.commit_particles() + + first, last, err = instance.get_firstlast_species_index() + for i in range(first, last+1): + x, err = instance.get_abundance(id, i) + self.assertTrue((x >= 0.) & (x <= 1.)) + self.assertEqual(err, 0) + x, err = instance.get_abundance(id, last+1) + self.assertEqual(err, -1) + + if krome_species is not None: + xs = np.random.rand(len(krome_species)) + for i, s in enumerate(krome_species): + x = xs[i] + aid, err = instance.get_species_index(s) + instance.set_abundance(id, aid, x) + + for i, s in enumerate(krome_species): + x = xs[i] + aid, err = instance.get_species_index(s) + xx, err = instance.get_abundance(id, aid) + self.assertEqual(x, xx) + self.assertEqual(err, 0) + + def test_evolve(self): + print("Test 9: evolve test") + + instance = self.new_instance_of_an_optional_code(KromeSphInterface, **default_options) + assert instance is not None + self.assertEqual(0, instance.initialize_code()) + self.assertEqual(0, instance.commit_parameters()) + + dens = 1.86510064359e-17 # u.g * u.cm**-3 + u = 204790703997.0 # u.cm**2 * u.s**-2, + gamma = 5./3. # dimensionless + mu = 2.042463e-24 # u.grams + ion = 0 # u.s**-1 + id, err = instance.new_particle(dens, u, gamma, mu, ion) + instance.commit_particles() + + first, last, err = instance.get_firstlast_species_index() + for i in range(first, last+1): + err = instance.set_abundance(id, i, 1e-40) + print(instance.get_abundance(id, i)) + + yr = 365*24*3600. + err = instance.evolve_model(10000*yr) + self.assertEqual(err, 0) + time, err = instance.get_time() + self.assertEqual(err, 0) + self.assertEqual(time, 10000.*yr) + + instance.stop() + + +class TestKromeSph(TestWithMPI): + def molecular_cloud(self, N): + """Make a molecular cloud with N particles.""" + Mgas = 3e4 | units.MSun + Rgas = 0.14 | units.pc + + converter = nbody_system.nbody_to_si(Mgas, Rgas) + cloud = new_molecular_cloud( + target_number_of_particles=N, + convert_nbody=converter + ) + cloud.rho = 1.86510064359e-17 | units.g * units.cm**-3 + cloud.u = 204790703997.0 | units.cm**2 * units.s**-2 + gamma = 5./3. + cloud.mu = 1.23 | units.amu + cloud.gamma = gamma + cloud.ionrate = 0.0 | units.s**-1 + cloud.index = range(N) + return cloud + + def test_startup(self): + print("Test 1: basic startup and flow") + instance = self.new_instance_of_an_optional_code(KromeSph) + assert instance is not None + + self.assertEqual(instance.get_name_of_current_state(), 'UNINITIALIZED') + instance.initialize_code() + self.assertEqual(instance.get_name_of_current_state(), 'INITIALIZED') + instance.commit_parameters() + self.assertEqual(instance.get_name_of_current_state(), 'EDIT') + instance.commit_particles() + self.assertEqual(instance.get_name_of_current_state(), 'RUN') + + instance.cleanup_code() + instance.stop() + + def test_add_particles(self): + print("Test 2: adding particles") + + instance = self.new_instance_of_an_optional_code(KromeSph) + assert instance is not None + + parts = self.molecular_cloud(5) + + self.assertEqual(len(instance.particles), 0) + instance.particles.add_particles(parts) + self.assertEqual(len(instance.particles), len(parts)) + + self.assertEqual(instance.get_name_of_current_state(), 'EDIT') + + instance.commit_particles() + self.assertEqual(instance.get_number_of_particles(), len(parts)) + + part2 = instance.particles.copy() + + self.assertAlmostRelativeEquals(parts.rho, part2.rho, 12) + self.assertAlmostRelativeEquals(parts.u, part2.u, 12) + self.assertAlmostRelativeEquals(parts.gamma, part2.gamma, 12) + self.assertAlmostRelativeEquals(parts.mu, part2.mu, 12) + self.assertAlmostRelativeEquals(parts.ionrate, part2.ionrate, 12) + + instance.cleanup_code() + instance.stop() + + def test_add_particles_with_abundances(self): + print("Test 3: adding particles w abund.") + + instance = self.new_instance_of_an_optional_code(KromeSph) + assert instance is not None + + cloud = self.molecular_cloud(100) + instance.particles.add_particles(cloud) + + channel_chem_2_gas = instance.particles.new_channel_to(cloud) + channel_gas_2_chem = cloud.new_channel_to(instance.particles) + + for p in cloud.index: + instance.set_abundance(p+1, instance.species['H']+1, 0.76875095999999998) + instance.set_abundance(p+1, instance.species['H2']+1, 0.0023031866999999998) + instance.set_abundance(p+1, instance.species['H+']+1, 5.8058537999999997e-09) + instance.set_abundance(p+1, instance.species['HE']+1, 0.23894584999999999) + + instance.commit_particles() + instance.evolve_model(100 | units.yr) + self.assertAlmostRelativeEquals( + instance.model_time.as_quantity_in(units.yr), 100 | units.yr + ) + instance.cleanup_code() + instance.stop() + + def test_1000_particles_evolve(self): + print("Test 4: evolve test (1000 part)") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + parts = self.molecular_cloud(1000) + + Ns = len(instance.species) + parts.abundances = np.zeros((1000, Ns)) + + instance.particles.add_particles(parts) + + instance.evolve_model(1. | units.Myr) + + self.assertAlmostRelativeEquals( + instance.model_time.as_quantity_in(units.Myr), 1 | units.Myr + ) + + instance.cleanup_code() + instance.stop() + + def test_delete_particles_and_abundances(self): + print("Test 5: Delete particles") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + N_particles = 10 + parts = self.molecular_cloud(N_particles) + + instance.particles.add_particles(parts) + instance.commit_particles() + + instance.evolve_model(100 | units.yr) + + N_species = len(instance.species) + abundances = instance.particles.abundances + self.assertEquals(abundances.shape, (N_particles, N_species)) + self.assertEquals(instance.get_number_of_particles(), N_particles) + + instance.particles.remove_particle(parts[0]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-1) + self.assertEquals(instance.particles.abundances.shape, (N_particles-1, N_species)) + self.assertEquals(instance.particles.abundances.shape, abundances[1:, :].shape) + self.assertEquals(instance.particles.abundances, abundances[1:, :]) + + instance.particles.remove_particle(parts[1:5]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-5) + self.assertEquals(instance.particles.abundances.shape, (N_particles-5, N_species)) + self.assertEquals(instance.particles.abundances, abundances[5:, :]) + + instance.particles.remove_particles(parts[5:]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), 0) + + instance.cleanup_code() + instance.stop() + + def test_species_index(self): + print("Test 6: test querying species") + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + species = instance.species + for name, index in species.items(): + self.assertEquals( + instance.species[name], instance.get_species_index(name) + ) + + self.assertEquals( + name, instance.get_species_name(index) + ) + + first, last = instance.get_firstlast_species_index() + print(first, last) + # boundary check 1: first and last index round-trip correctly + for i in (first, last): + print(i) + name = instance.get_species_name(i) + idx = instance.get_species_index(name) + assert idx == i, f"boundary mismatch at i={i}: name={name}, got idx={idx}" + + # boundary check 2: full round-trip over every index, not just species dict membership + for i in range(first, last + 1): + print(i) + name = instance.get_species_name(i) + idx = instance.get_species_index(name) + assert idx == i, f"mismatch at i={i}: name={name!r}, idx={idx}" + + instance.cleanup_code() + instance.stop() + + def test_get_abundance(self): + print("Test 7: get_abundance") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + cloud = self.molecular_cloud(100) + instance.particles.add_particles(cloud) + + reference_abundances = { + 'H': 0.76875095999999998, + 'H2': 0.0023031866999999998, + 'H+': 5.8058537999999997e-09, + 'HE': 0.23894584999999999, + } + + for p in cloud.index: + for species, value in reference_abundances.items(): + instance.set_abundance(p+1, instance.species[species], value) + + instance.commit_particles() + + for species, expected in reference_abundances.items(): + result = instance.get_abundance(1, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected, 7) + + instance.cleanup_code() + instance.stop() + + def test_set_abundance(self): + print("Test 8: set_abundance") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + cloud = self.molecular_cloud(100) + instance.particles.add_particles(cloud) + + instance.set_abundance(1, instance.species['H2'], 0.0023031866999999998) + instance.commit_particles() + + result = instance.get_abundance(1, instance.species['H2']) + self.assertEquals(result, 0.0023031866999999998) + + instance.cleanup_code() + instance.stop() + + def test_set_abundances(self): + print("Test 9: set_abundances from array") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + cloud = self.molecular_cloud(2) + instance.particles.add_particles(cloud) + + n_species = len(instance.species) + abundances = np.zeros(n_species) + abundances[instance.species['H'] - 1] = 0.76875095999999998 + abundances[instance.species['H2'] - 1] = 0.0023031866999999998 + abundances[instance.species['H+'] - 1] = 5.8058537999999997e-09 + abundances[instance.species['HE'] - 1] = 0.23894584999999999 + + instance.set_abundances(1, abundances) + instance.set_abundances(2, abundances*2) + instance.commit_particles() + + for species, expected in [ + ('H', 0.76875095999999998), + ('H2', 0.0023031866999999998), + ('H+', 5.8058537999999997e-09), + ('HE', 0.23894584999999999), + ]: + result = instance.get_abundance(1, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected, 7) + result = instance.get_abundance(2, instance.species[species]) + self.assertAlmostRelativeEquals(result, expected*2, 7) + + instance.cleanup_code() + instance.stop() + + def test_get_abundances_by_name(self): + print("Test 10: get_abundances_by_name") + + instance = self.new_instance_of_an_optional_code(KromeSph, **default_options) + assert instance is not None + + cloud = self.molecular_cloud(10) + instance.particles.add_particles(cloud) + + reference_abundances = { + 'H': 0.76875095999999998, + 'H2': 0.0023031866999999998, + 'H+': 5.8058537999999997e-09, + 'HE': 0.23894584999999999, + } + + for p in cloud.index: + for species, value in reference_abundances.items(): + instance.set_abundance(p+1, instance.species[species], value) + + instance.commit_particles() + + # single-name input + result_single = instance.get_abundances_by_name(1, 'H') + self.assertAlmostRelativeEquals(result_single[0], reference_abundances['H'], 7) + + # sequence-of-names input, order must be preserved + names = ['H', 'H2', 'H+', 'HE'] + result_seq = instance.get_abundances_by_name(1, names) + expected_seq = np.array([reference_abundances[n] for n in names]) + self.assertAlmostRelativeEquals(result_seq, expected_seq, 7) + + instance.cleanup_code() + instance.stop() diff --git a/src/amuse_uclchem/Makefile b/src/amuse_uclchem/Makefile new file mode 100644 index 0000000000..3c8b7173ff --- /dev/null +++ b/src/amuse_uclchem/Makefile @@ -0,0 +1,61 @@ +ifneq (,$(filter-out clean distclean, $(MAKECMDGOALS))) +include support/config.mk +endif + + +# Detecting dependencies +support/config.mk: + cd support && ./configure + +# Downloading the code +VERSION = 70fa3545c4f2a541c34c7c663bea8c1814fe7374 + +uclchem.tar.gz: + $(DOWNLOAD) https://github.com/uclchem/UCLCHEM/archive/$(VERSION).tar.gz >$@ + +src/UCLCHEM-$(VERSION): uclchem.tar.gz + tar xf $< + mv UCLCHEM-$(VERSION) src/ + + +# UCLCHEM is a fortran code which is compiled to a Python API using np.f2py +# For this reason, the UCLCHEM interface only interacts with the Python side +.PHONY: install_uclchem +install_uclchem: | src/UCLCHEM-$(VERSION) +ifneq ($(CONDA_PREFIX),) + conda install --yes --channel conda-forge --override-channels pandas numpy pyyaml charset-normalizer matplotlib seaborn scipy tqdm joblib +endif + pip install src/UCLCHEM-$(VERSION) + + +uclchem_worker: interface.py install_uclchem + PYTHONPATH=. amusifier --type=py --mode=mpi -x interface UclchemInterface UclchemImplementation -o $@ + +amuse-uclchem_contains: uclchem_worker + + +# Building and installing packages +develop-%: %_contains + support/shared/uninstall.sh $* + python -m pip install -e packages/$* + +install-%: %_contains + support/shared/uninstall.sh $* + python -m pip install packages/$* + +package-%: %_contains + python3 -m pip install -vv --no-cache-dir --no-deps --no-build-isolation --prefix ${PREFIX} packages/$* + +test-%: + cd packages/$* && pytest + + +# Cleaning up +.PHONY: clean +clean: + rm -rf *worker* + +.PHONY: distclean +distclean: clean + rm -f support/config.mk support/config.log support/config.status + rm -rf support/autom4te.cache diff --git a/src/amuse_uclchem/__init__.py b/src/amuse_uclchem/__init__.py new file mode 100644 index 0000000000..04440315a2 --- /dev/null +++ b/src/amuse_uclchem/__init__.py @@ -0,0 +1 @@ +from amuse_uclchem.interface import Uclchem diff --git a/src/amuse_uclchem/interface.py b/src/amuse_uclchem/interface.py new file mode 100644 index 0000000000..9cc778d425 --- /dev/null +++ b/src/amuse_uclchem/interface.py @@ -0,0 +1,1085 @@ +import numpy as np +from numpy.typing import NDArray +import uclchem +from uclchem.model import ( + get_species_names as _get_species_names, AbstractModel +) + +from amuse.community.interface.chem import ( + ChemNumberDensityTemperature, + ChemicalEvolution, + ChemicalEvolutionInterface, + ChemNumberDensityTemperatureInterface, +) +from amuse.support.literature import LiteratureReferencesMixIn +from amuse.datamodel import Particle, Particles +from amuse.rfi.core import ( + LegacyFunctionSpecification, + PythonCodeInterface, + legacy_function, + remote_function +) +from amuse.units import units as u + + +class UclchemImplementation(object): + def __init__(self): + """ + Implementation of Uclchem legacy interface functions. + + Parameters + ---------- + current_time : float + Current simulation time. + chem_model : {'cloud', 'collapse', 'cshock', 'jshock', 'prestellarcore'} + Uclchem model for the chemistry evolution. + MODEL_MAP : dict[str, type[AbstractModel]] + Dictionary to map `chem_model` to a Uclchem AbstractModel class. + These are the actual models which compute the chemistry. + model_class : type[AbstractModel] + Current Uclchem AbstractModel class used when calling `evolve_model`. + self.param_dict : dict + Dictionary to hold any additional parameters sent to Uclchem before + evolving. Parameter getters and setters should modify this dictionary. + uclchem_particles : amuse.datamodel.Particles + Particles datamodel for storing Uclchem particles. + _ids : np.ndarray[int] + Array of unique ids for each particle in `uclchem_particles`. + _next_particle_id : int + Next particle index. New ids are assigned by `_get_new_id`. + """ + self.current_time: float = 0 + self.chem_model: str = 'cloud' + self.MODEL_MAP = { + 'cloud': uclchem.model.Cloud, + 'collapse': uclchem.model.Collapse, + 'cshock': uclchem.model.CShock, + 'prestellarcore': uclchem.model.PrestellarCore, + 'jshock': uclchem.model.JShock, + } + self.model_class = self._validate_chemical_model( + self.MODEL_MAP.get(self.chem_model, None) + ) + self.param_dict: dict = {} + self.uclchem_particles: Particles = Particles() + self._ids: NDArray = np.empty(0, dtype=np.int64) + self._next_particle_id: int = 0 + + def initialize_code(self) -> int: + return 0 + + def cleanup_code(self) -> int: + """Remove all the particles stored in Uclchem.""" + self.uclchem_particles.remove_particles(self.uclchem_particles) + return 0 + + def commit_parameters(self) -> int: + """ + Convert the chemical model string name to its corresponding AbstractModel class. + + Validates that the chemical model specified by the user maps to a valid + Uclchem model class. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `chem_model` is not a valid model name. + """ + model = self.MODEL_MAP.get(self.chem_model, None) + self.model_class = self._validate_chemical_model(model) + return 0 + + def commit_particles(self) -> int: + """ + Initialize the abundance vector attribute of the particle set + with an array of zeros. + + Returns + ------- + int : + 0 on success. + """ + species = tuple(_get_species_names()) + self.uclchem_particles.add_vector_attribute('abundances', species) + self.uclchem_particles.abundances = np.zeros(len(species)) #+ 1-30 + return 0 + + def recommit_parameters(self) -> int: + """ + Convert the chemical model name to its corresponding AbstractModel class. + + Validates that the chemical model specified by the user maps to a valid + Uclchem model class. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `chem_model` is not a valid model name. + """ + self.commit_parameters() + return 0 + + def recommit_particles(self) -> int: + """ + Recommit particles. + + Returns + ------- + int : + 0 on success. + """ + return 0 + + def evolve_model(self, time) -> int: + """ + Evolve the current model to a specified end time in years. + The chemistry physics can be changed by calling + `set_chemical_model`. + + Parameters + ---------- + time : float + Time to evolve the chemistry to in years. + + Returns + ------- + int : + Return status: + - 0: Evolved model successfully. + - -1 : Requested time is less than or equal to + the current simulation time. + """ + dt = float(time - self.current_time) + if dt <= 0: + return -1 + + for particle in self.uclchem_particles: + params = self._particle_to_dict(particle) + params['finalTime'] = dt + params.update(self.param_dict) + + starting_chem = ( + particle.abundances[np.newaxis, :] if + np.any(particle.abundances) else None + ) + new_model = self.model_class( + param_dict=params, + starting_chemistry=starting_chem + ) + physics = new_model.physics_array + particle.number_density = physics[-1, 0, 1] + particle.temperature = physics[-1, 0, 2] + particle.abundances = new_model.next_starting_chemistry_array[0, :] + + self.current_time = float(time) + return 0 + + def new_particle( + self, + index_of_the_particle, + number_density, + temperature, + ionrate, + radfield + ) -> int: + """ + Add a new particle to Uclchem. + + Parameters + ---------- + index_of_the_particle : amuse.rfi.python_code.ValueHolder[int] + Mutable container used to return the index of the new particle. + number_density : float + Number density of the particle in units of cm**-3. + temperature : float + Temperature of the particle in units of K. + ionrate : float + Ionization rate of the particle in units of s**-1. + radfield : float + Radiation field of the particle in units of habing. + + Returns + ------- + int : + 0 on success. + """ + p = Particle() + p.number_density = number_density + p.temperature = temperature + p.ionrate = ionrate + p.radfield = radfield + + id = self._get_new_id() + index_of_the_particle.value = id + self.uclchem_particles.add_particle(p) + self._ids = np.append(self._ids, id) + + return 0 + + def delete_particle(self, index_of_the_particle) -> int: + """ + Delete a particle in Uclchem. + + Parameters + ---------- + index_of_the_particle : int + index of the particle to delete, + as returned by 'new_particle`. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + self.uclchem_particles.remove_particles(self.uclchem_particles[i].as_set()) + self._ids = np.delete(self._ids, i) + return 0 + + def get_state( + self, + index_of_the_particle, + number_density, + temperature, + ionrate, + radfield + ) -> int: + """ + Retrieve the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + number_density : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the number density + of the particle in units of cm**-3. + temperature : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the temperature + of the particle in units of K. + ionrate : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the ionization + rate of the particle in units of s**-1. + radfield : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the radiation + field of the particle in units of habing. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + number_density.value = p.number_density + temperature.value = p.temperature + ionrate.value = p.ionrate + radfield.value = p.radfield + return 0 + + def set_state( + self, + index_of_the_particle, + number_density, + temperature, + ionrate, + radfield + ) -> int: + """ + Set the state of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + number_density : float + Number density of the particle in units of cm**-3. + temperature : float + Temperature of the particle in units of K. + ionrate : float + Ionization rate of the particle in units of s**-1. + radfield : float + Radiation field of the particle in units of habing. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + p.number_density = number_density + p.temperature = temperature + p.ionrate = ionrate + p.radfield = radfield + return 0 + + def get_number_density(self, index_of_the_particle, number_density) -> int: + """ + Retrieve the number density of a particle by index. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + number_density : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the number density + of the particle in units of cm**-3. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + number_density.value = p.number_density + return 0 + + def set_number_density(self, index_of_the_particle, number_density) -> int: + """ + Set the number density of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + number_density: float + Number density of the particle in units of cm**-3. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + p.number_density = number_density + return 0 + + def get_temperature(self, index_of_the_particle, temperature) -> int: + """ + Retrieve the temperature of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + temperature : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the temperature + of the particle in units of K. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + temperature.value = p.temperature + return 0 + + def set_temperature(self, index_of_the_particle, temperature) -> int: + """ + Set the temperature of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + temperature : float + Temperature of the particle in units of K. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + p.temperature = temperature + return 0 + + def get_ionrate(self, index_of_the_particle, ionrate) -> int: + """ + Retrieve the ionization rate of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + ionrate : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the ionization + rate of the particle in units of s**-1. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + ionrate.value = p.ionrate + return 0 + + def set_ionrate(self, index_of_the_particle, ionrate) -> int: + """ + Retrieve the ionization rate of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + ionrate : float + Ionization rate of the particle in units of s**-1. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + p.ionrate = ionrate + return 0 + + def get_radfield(self, index_of_the_particle, radfield) -> int: + """ + Retrieve the radiation field of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + radfield : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the radiation + field of the particle in units of habing. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + radfield.value = p.radfield + return 0 + + def set_radfield(self, index_of_the_particle, radfield) -> int: + """ + Set the radiation field of a particle by index. + + Parameters + ---------- + index_of_the_particle: int + Index of the particle as returned by `new_particle`. + radfield : float + Radiation field of the particle in units of habing. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + p = self.uclchem_particles[i] + p.radfield = radfield + return 0 + + def get_abundance(self, index_of_the_particle, species_index, abundance) -> int: + """ + Retrieve the chemical abundance of a species for a given particle by index. + + The `species_index` can be queried for using the methods `get_species_index` + and `get_species_name`. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + species_index : int + Index of the species in the abundance array of the particle. + The `species_index` can be queried for using `get_species_index`. + abundance : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the abundance of a particle. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + abundance.value = self.uclchem_particles[i].abundances[species_index] + return 0 + + def set_abundance(self, index_of_the_particle, species_index, abundance) -> int: + """ + Set the chemical abundance of a species for a given particle by index. + + The `species_index` can be queried for using the methods `get_species_index` + and `get_species_name`. + + Parameters + ---------- + index_of_the_particle : int + Index of the particle as returned by `new_particle`. + species_index : int + Index of the species in the abundance array of the particle. + The `species_index` can be queried for using `get_species_index`. + abundance : float + Abundance of the chemical species of the particle. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + """ + i = self._id_to_storage_index(index_of_the_particle) + + abundances = self.uclchem_particles[i].abundances + abundances[species_index] = abundance + self.uclchem_particles[i].abundances = abundances + return 0 + + def set_abundances(self, index_of_the_particle, abundances, N) -> int: + """ + Set the full chemical abundance array for a given particle. + + Parameters + ---------- + index_of_the_particle : np.ndarray[int] + Index of the particle as returned by `new_particle`. If an array, + only the first element is used. + abundances : np.ndarray[float] + Abundance values to assign to the particle, of length `N`. + N : int + Number of abundance values in `abundances`. Must match the + particle's existing abundance array length. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `index_of_the_particle` is not a valid particle id. + ValueError : + If `N` does not match the particle's existing number of abundances. + """ + if not isinstance(index_of_the_particle, int): + index_of_the_particle = index_of_the_particle[0] + i = self._id_to_storage_index(index_of_the_particle) + N_abundances = self.uclchem_particles[i].abundances.shape[0] + if N != N_abundances: + raise ValueError( + f'abundances must have shape {N_abundances}, got {N}!' + ) + self.uclchem_particles[i].abundances = abundances + return 0 + + def get_firstlast_species_index(self, first, last) -> int: + """ + Get the index of the first and last species inside Uclchem. + + This is a helper method for accessing the abundance array as + `instance.particles.abundances`. + + Parameters + ---------- + first : amuse.rfi.python_code.ValueHolder[int] + Index of the first species in the abundance array. + last : amuse.rfi.python_code.ValueHolder[int] + Index of the last species in the abundance array. + + Returns + ------- + int : + 0 on success. + """ + first.value = 0 + last.value = len(_get_species_names()) - 1 + return 0 + + def get_species_index(self, name, species_index) -> int: + """ + Given the name of a chemical species in the + chemical abundance array, retrieve its index. + + Chemical abundances for each particle are stored + as a 1D array, where each element corresponds to + the abundance of a particular species. + + Parameters + ---------- + name : str + Name of chemical species. Must be one of the + species tracked by Uclchem. + species_index : amuse.rfi.python_code.ValueHolder[int] + Mutable container used to return the index + of the species. + + Returns + ------- + int : + Return status: + - 0: Species index retrieved successfully. + - -1: Species does not exist. + + Examples + -------- + >>> chem = Uclchem() + >>> chem.get_species_index('H2O') + 31 + """ + species_names = _get_species_names() + + try: + idx = species_names.index(name) + except ValueError: + return -1 + + species_index.value = idx + return 0 + + def get_species_name(self, species_index, name) -> int: + """ + Given the index of a chemical species in the + chemical abundance array, retrieve its name. + + Chemical abundances for each particle are stored + as a 1D array, where each element corresponds to + the abundance of a particular species. + + Parameters + ---------- + species_index : int + Index of the chemical species in the abundance array. + name : amuse.rfi.python_code.ValueHolder[str] + Mutable container used to return the name of + the chemical species. + + Returns + ------- + int : + 0 on success. + + Examples + -------- + >>> chem = Uclchem() + >>> chem.get_species_name(31) + 'H2O' + """ + species_names = _get_species_names() + if not 0 <= species_index < len(species_names): + return -1 + + name.value = species_names[species_index] + return 0 + + def get_time(self, time) -> int: + """ + Retrieve current model time in years. + + Parameters + ---------- + time : amuse.rfi.python_code.ValueHolder[float] + Mutable container used to return the + current time in units of years. + + Returns + ------- + int : + 0 on success. + """ + time.value = self.current_time + return 0 + + def get_number_of_particles(self, number_of_particles) -> int: + """ + Retrieve the current number of particles in the code. + + Parameters + ---------- + number_of_particles : amuse.rfi.python_code.ValueHolder[int] + Mutable container used to return the + current number of particles. + + Returns + ------- + int : + 0 on success. + """ + number_of_particles.value = len(self.uclchem_particles) + return 0 + + def get_chemical_model(self, chem_model) -> int: + """ + Retrieve the chemical model type used by Uclchem. + This is the physics model used internally by Uclchem + to evolve the chemistry. + + Possible values are `'cloud'`, `'collapse'`, `'cshock'`, + `'jshock'`, and `'prestellarcore'`. + + Parameters + ---------- + chem_model : amuse.rfi.python_code.ValueHolder[str] + Mutable container used to return the current + model type. + + Returns + ------- + int : + 0 on success. + """ + chem_model.value = self.chem_model + return 0 + + def set_chemical_model(self, chem_model) -> int: + """ + Set the chemical model used by Uclchem. This is + the physics model used internally by Uclchem to + evolve the chemistry. + + Possible values are `'cloud'`, `'collapse'`, `'cshock'`, + `'jshock'`, and `'prestellarcore'`. + + Parameters + ---------- + chem_model : {'cloud', 'collapse', 'cshock', 'jshock', 'prestellarcore'} + Chemical model specifying the chemistry physics when evolving the particles. + + Returns + ------- + int : + 0 on success. + + Raises + ------ + ValueError : + If `chem_model` is not one of the allowed models. + """ + self.chem_model = chem_model + self.model_class = self._validate_chemical_model( + self.MODEL_MAP.get(self.chem_model, None) + ) + return 0 + + def _validate_chemical_model(self, model: type[AbstractModel] | None) -> type[AbstractModel]: + """ + Validate chemical model class. + + Parameters + ---------- + model : type[AbstractModel] | None + Model class to validate. + + Returns + ------- + type[AbstractModel] : + Validated model class. + + Raises + ------ + ValueError : + If `model` is `None`. + """ + if model is None: + options = ", ".join(f"'{k}'" for k in self.MODEL_MAP.keys()) + raise ValueError( + f"\nchem_model must be one of the following options: {options}! " + f"Got {self.chem_model!r}." + ) + return model + + def _id_to_storage_index(self, index_of_the_particle: int) -> int: + """ + Resolve a particle id to its current index in internal storage. + + Ids are assigned once per particle by `_get_new_id` and never reused. + `self._ids[k]` holds the id of the particle stored at position `k` in + `self.uclchem_particles`; this mapping is kept in sync by `new_particle` + and `delete_particle`. Because storage positions shift when a particle + is deleted while ids remain fixed, this lookup must be used instead of + assuming id and storage index are equal. + + Parameters + ---------- + index_of_the_particle : int + Id of the particle, as assigned in `new_particle` and returned via + its `index_of_the_particle` output parameter. + + Returns + ------- + int : + Current index of the particle in internal storage + (`self.uclchem_particles`). + + Raises + ------ + ValueError : + If no particle with the given id exists in `self._ids`. + """ + idx = np.where(self._ids == index_of_the_particle)[0] + if idx.size == 0: + raise ValueError(f'Particle id: {index_of_the_particle} not found!') + + return int(idx[0]) + + def _get_new_id(self) -> int: + """Create a unique, monotonically increasing id for `new_particle`.""" + new_id = self._next_particle_id + self._next_particle_id += 1 + + return int(new_id) + + def _particle_to_dict(self, particle: Particle) -> dict: + """ + Format an AMUSE Particle into a parameter dictionary + readable by Uclchem. + + Unlike AMUSE, Uclchem does not work with particles but + rather a dictionary of parameters. This is a helper function + to be called before evolving a particle with Uclchem. + + Parameters + ---------- + particle : amuse.datamodel.Particle + Particle to evolve by Uclchem. + + Returns + ------- + dict : + Particle returned as a dictionary with key, value + pairs taken from the particle attributes. + """ + param_dict = { + 'initialDens': float(particle.number_density), + 'initialTemp': float(particle.temperature), + 'zeta': float(particle.ionrate) / 1.3e-17, + 'radfield': float(particle.radfield), + } + return param_dict + + +class UclchemInterface( + ChemicalEvolutionInterface, + ChemNumberDensityTemperatureInterface, + PythonCodeInterface, + LiteratureReferencesMixIn, +): + """ + UCLCHEM: a gas-grain chemical code for astrochemical modelling. + + .. [#] ADS:2017AJ....154...38H (Holdship, J. ; Viti, S, ; Jiménez-Serra, I.; Makrymallis, A. ; Priestley, F. , 2017, AJ) + """ + def __init__(self, **options): + PythonCodeInterface.__init__( + self, + UclchemImplementation, + 'uclchem_worker', + **options + ) + LiteratureReferencesMixIn.__init__(self) + + @legacy_function + def new_particle(): + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter('index_of_the_particle', dtype='i', direction=function.OUT) + for x in ['number_density', 'temperature', 'ionrate', 'radfield']: + function.addParameter(x, dtype='d', direction=function.IN) + function.result_type = 'i' + return function + + @legacy_function + def get_state(): + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter('index_of_the_particle', dtype='i', direction=function.IN) + for x in ['number_density', 'temperature', 'ionrate', 'radfield']: + function.addParameter(x, dtype='d', direction=function.OUT) + function.result_type = 'i' + return function + + @legacy_function + def set_state(): + function = LegacyFunctionSpecification() + function.can_handle_array = True + function.addParameter('index_of_the_particle', dtype='i', direction=function.IN) + for x in ['number_density', 'temperature', 'ionrate', 'radfield']: + function.addParameter(x, dtype='d', direction=function.IN) + function.result_type = 'i' + return function + + @remote_function(can_handle_array=True) + def get_radfield(index_of_the_particle='i'): + returns (radfield='d') + + @remote_function(can_handle_array=True) + def set_radfield(index_of_the_particle='i', radfield='d'): + returns () + + @remote_function + def get_chemical_model(): + returns (chem_model='s') + + @remote_function + def set_chemical_model(chem_model='s'): + returns () + + +class Uclchem(ChemicalEvolution, ChemNumberDensityTemperature): + """Uclchem is a gas-grain chemical code for astrochemical modelling.""" + def __init__(self, unit_converter=None, **options): + + if unit_converter is not None: + raise ValueError('Uclchem uses predefined units') + + chem_interface = UclchemInterface(**options) + + ChemicalEvolution.__init__( + self, + chem_interface + ) + + first, last = self.get_firstlast_species_index() + self.species = dict() + for i in range(first, last+1): + self.species[self.get_species_name(i)] = i + + def define_methods(self, handler): + ChemicalEvolution.define_methods(self, handler) + ChemNumberDensityTemperature.define_methods(self, handler) + handler.add_method( + 'new_particle', + (u.cm**-3, u.K, u.s**-1, u.habing), + (handler.INDEX, handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_state', + (handler.INDEX,), + (u.cm**-3, u.K, u.s**-1, u.habing, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_state', + (handler.INDEX, u.cm**-3, u.K, u.s**-1, u.habing,), + (handler.ERROR_CODE,), + ) + + handler.add_method( + 'get_radfield', + (handler.INDEX,), + (u.habing, handler.ERROR_CODE,), + ) + + handler.add_method( + 'set_radfield', + (handler.INDEX, u.habing,), + (handler.ERROR_CODE,), + ) + + def define_parameters(self, handler): + handler.add_method_parameter( + 'get_chemical_model', + 'set_chemical_model', + 'chem_model', + "'cloud', 'collapse', 'cshock', 'jshock', 'prestellarcore'", + default_value='cloud' + ) + handler.add_interface_parameter( + 'out_species', 'Array of molecules to use', default_value=['H', 'H2'] + ) + + def define_particle_sets(self, handler): + ChemicalEvolution.define_particle_sets(self, handler) + ChemNumberDensityTemperature.define_particle_sets(self, handler) diff --git a/src/amuse_uclchem/packages/amuse-uclchem.amuse_deps b/src/amuse_uclchem/packages/amuse-uclchem.amuse_deps new file mode 100644 index 0000000000..161d18d08f --- /dev/null +++ b/src/amuse_uclchem/packages/amuse-uclchem.amuse_deps @@ -0,0 +1 @@ +fortran python diff --git a/src/amuse_uclchem/packages/amuse-uclchem/amuse_uclchem b/src/amuse_uclchem/packages/amuse-uclchem/amuse_uclchem new file mode 120000 index 0000000000..c25bddb6dd --- /dev/null +++ b/src/amuse_uclchem/packages/amuse-uclchem/amuse_uclchem @@ -0,0 +1 @@ +../.. \ No newline at end of file diff --git a/src/amuse_uclchem/packages/amuse-uclchem/pyproject.toml b/src/amuse_uclchem/packages/amuse-uclchem/pyproject.toml new file mode 100644 index 0000000000..9ae1b7a564 --- /dev/null +++ b/src/amuse_uclchem/packages/amuse-uclchem/pyproject.toml @@ -0,0 +1,48 @@ +[project] +name = "amuse-uclchem" +version = "0.0.1" +# use the line below instead of the version above if this code is inside the AMUSE +# repository +#dynamic = ["version"] +requires-python = ">=3.7" +dependencies = [ + "amuse-framework" +] + +[build-system] +requires = ["hatchling", "versioningit"] +build-backend = "hatchling.build" + +[tool.hatch.version] +source = "versioningit" + +[tool.versioningit.next-version] +method = "smallest" + +[tool.versioningit.format] +distance = "{next_version}.dev{distance}+{vcs}{rev}" +dirty = "{base_version}+d{build_date:%Y%m%d}" +distance-dirty = "{next_version}.dev{distance}+{vcs}{rev}.d{build_date:%Y%m%d}" + +[tool.versioningit.vcs] +method = { module = "version_helper", value = "get_amuse_version", module-dir = "amuse_uclchem/support/shared" } + +[tool.hatch.build] +skip-excluded-dirs = true + +[tool.hatch.build.targets.wheel] +include = ["amuse_uclchem/**/*.py"] +exclude = [ + "amuse_uclchem/packages", + "amuse_uclchem/support", + "amuse_uclchem/src", + "amuse_uclchem/tests" + ] +artifacts = ["amuse_uclchem/uclchem_worker"] + +[tool.pytest.ini_options] +pythonpath = ["amuse_uclchem/tests/"] + +testpaths = ["amuse_uclchem/tests"] + +addopts = "--import-mode=append" # FIXME diff --git a/src/amuse_uclchem/src/Makefile b/src/amuse_uclchem/src/Makefile new file mode 100644 index 0000000000..a0c44a85fa --- /dev/null +++ b/src/amuse_uclchem/src/Makefile @@ -0,0 +1,20 @@ +CODELIB = libuclchem.a + +CODEOBJS = uclchem.o + + +all: $(CODELIB) + +clean: + rm -f *.o *.a *.mod + +distclean: clean + +$(CODELIB): $(CODEOBJS) + rm -f $@ + $(AR) -ruv $@ $(CODEOBJS) + $(RANLIB) $@ + +%.o: %.f90 + $(FC) $(FCFLAGS) -c -o $@ $< + diff --git a/src/amuse_uclchem/support/aclocal.m4 b/src/amuse_uclchem/support/aclocal.m4 new file mode 100644 index 0000000000..11fd05ebb7 --- /dev/null +++ b/src/amuse_uclchem/support/aclocal.m4 @@ -0,0 +1,21 @@ +# generated automatically by aclocal 1.18.1 -*- Autoconf -*- + +# Copyright (C) 1996-2025 Free Software Foundation, Inc. + +# This file is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +m4_ifndef([AC_CONFIG_MACRO_DIRS], [m4_defun([_AM_CONFIG_MACRO_DIRS], [])m4_defun([AC_CONFIG_MACRO_DIRS], [_AM_CONFIG_MACRO_DIRS($@)])]) +m4_include([shared/m4/amuse_download.m4]) +m4_include([shared/m4/amuse_lib.m4]) +m4_include([shared/m4/amuse_venv.m4]) +m4_include([shared/m4/ax_count_cpus.m4]) +m4_include([shared/m4/ax_mpi.m4]) +m4_include([shared/m4/fortran.m4]) +m4_include([shared/m4/pkg.m4]) diff --git a/src/amuse_uclchem/support/config.mk.in b/src/amuse_uclchem/support/config.mk.in new file mode 100644 index 0000000000..41c03f2f83 --- /dev/null +++ b/src/amuse_uclchem/support/config.mk.in @@ -0,0 +1,16 @@ +# Compilers +FC = @FC@ + +MPIFC = @MPIFC@ + +CPU_COUNT = @CPU_COUNT@ + +# Tools +AR = @AR@ +RANLIB = @RANLIB@ +DOWNLOAD = @DOWNLOAD@ +TAR = @TAR@ + +# AMUSE framework libraries +STOPCOND_CFLAGS = @STOPCOND_CFLAGS@ +STOPCOND_LIBS = @STOPCOND_LIBS@ diff --git a/src/amuse_uclchem/support/configure b/src/amuse_uclchem/support/configure new file mode 100755 index 0000000000..881b0d41e4 --- /dev/null +++ b/src/amuse_uclchem/support/configure @@ -0,0 +1,6439 @@ +#! /bin/sh +# Guess values for system-dependent variables and create Makefiles. +# Generated by GNU Autoconf 2.72 for amuse-uclchem 1.0. +# +# +# Copyright (C) 1992-1996, 1998-2017, 2020-2023 Free Software Foundation, +# Inc. +# +# +# This configure script is free software; the Free Software Foundation +# gives unlimited permission to copy, distribute and modify it. +## -------------------- ## +## M4sh Initialization. ## +## -------------------- ## + +# Be more Bourne compatible +DUALCASE=1; export DUALCASE # for MKS sh +if test ${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which + # is contrary to our usage. Disable this feature. + alias -g '${1+"$@"}'='"$@"' + setopt NO_GLOB_SUBST +else case e in #( + e) case `(set -o) 2>/dev/null` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi + + + +# Reset variables that may have inherited troublesome values from +# the environment. + +# IFS needs to be set, to space, tab, and newline, in precisely that order. +# (If _AS_PATH_WALK were called with IFS unset, it would have the +# side effect of setting IFS to empty, thus disabling word splitting.) +# Quoting is to prevent editors from complaining about space-tab. +as_nl=' +' +export as_nl +IFS=" "" $as_nl" + +PS1='$ ' +PS2='> ' +PS4='+ ' + +# Ensure predictable behavior from utilities with locale-dependent output. +LC_ALL=C +export LC_ALL +LANGUAGE=C +export LANGUAGE + +# We cannot yet rely on "unset" to work, but we need these variables +# to be unset--not just set to an empty or harmless value--now, to +# avoid bugs in old shells (e.g. pre-3.0 UWIN ksh). This construct +# also avoids known problems related to "unset" and subshell syntax +# in other old shells (e.g. bash 2.01 and pdksh 5.2.14). +for as_var in BASH_ENV ENV MAIL MAILPATH CDPATH +do eval test \${$as_var+y} \ + && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || : +done + +# Ensure that fds 0, 1, and 2 are open. +if (exec 3>&0) 2>/dev/null; then :; else exec 0&1) 2>/dev/null; then :; else exec 1>/dev/null; fi +if (exec 3>&2) ; then :; else exec 2>/dev/null; fi + +# The user is always right. +if ${PATH_SEPARATOR+false} :; then + PATH_SEPARATOR=: + (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { + (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || + PATH_SEPARATOR=';' + } +fi + + +# Find who we are. Look in the path if we contain no directory separator. +as_myself= +case $0 in #(( + *[\\/]* ) as_myself=$0 ;; + *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + test -r "$as_dir$0" && as_myself=$as_dir$0 && break + done +IFS=$as_save_IFS + + ;; +esac +# We did not find ourselves, most probably we were run as 'sh COMMAND' +# in which case we are not to be found in the path. +if test "x$as_myself" = x; then + as_myself=$0 +fi +if test ! -f "$as_myself"; then + printf "%s\n" "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2 + exit 1 +fi + + +# Use a proper internal environment variable to ensure we don't fall + # into an infinite loop, continuously re-executing ourselves. + if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then + _as_can_reexec=no; export _as_can_reexec; + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed 'exec'. +printf "%s\n" "$0: could not re-execute with $CONFIG_SHELL" >&2 +exit 255 + fi + # We don't want this to propagate to other subprocesses. + { _as_can_reexec=; unset _as_can_reexec;} +if test "x$CONFIG_SHELL" = x; then + as_bourne_compatible="if test \${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which + # is contrary to our usage. Disable this feature. + alias -g '\${1+\"\$@\"}'='\"\$@\"' + setopt NO_GLOB_SUBST +else case e in #( + e) case \`(set -o) 2>/dev/null\` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi +" + as_required="as_fn_return () { (exit \$1); } +as_fn_success () { as_fn_return 0; } +as_fn_failure () { as_fn_return 1; } +as_fn_ret_success () { return 0; } +as_fn_ret_failure () { return 1; } + +exitcode=0 +as_fn_success || { exitcode=1; echo as_fn_success failed.; } +as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } +as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } +as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } +if ( set x; as_fn_ret_success y && test x = \"\$1\" ) +then : + +else case e in #( + e) exitcode=1; echo positional parameters were not saved. ;; +esac +fi +test x\$exitcode = x0 || exit 1 +blah=\$(echo \$(echo blah)) +test x\"\$blah\" = xblah || exit 1 +test -x / || exit 1" + as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO + as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO + eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" && + test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1 +test \$(( 1 + 1 )) = 2 || exit 1" + if (eval "$as_required") 2>/dev/null +then : + as_have_required=yes +else case e in #( + e) as_have_required=no ;; +esac +fi + if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null +then : + +else case e in #( + e) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +as_found=false +for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + as_found=: + case $as_dir in #( + /*) + for as_base in sh bash ksh sh5; do + # Try only shells that exist, to save several forks. + as_shell=$as_dir$as_base + if { test -f "$as_shell" || test -f "$as_shell.exe"; } && + as_run=a "$as_shell" -c "$as_bourne_compatible""$as_required" 2>/dev/null +then : + CONFIG_SHELL=$as_shell as_have_required=yes + if as_run=a "$as_shell" -c "$as_bourne_compatible""$as_suggested" 2>/dev/null +then : + break 2 +fi +fi + done;; + esac + as_found=false +done +IFS=$as_save_IFS +if $as_found +then : + +else case e in #( + e) if { test -f "$SHELL" || test -f "$SHELL.exe"; } && + as_run=a "$SHELL" -c "$as_bourne_compatible""$as_required" 2>/dev/null +then : + CONFIG_SHELL=$SHELL as_have_required=yes +fi ;; +esac +fi + + + if test "x$CONFIG_SHELL" != x +then : + export CONFIG_SHELL + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed 'exec'. +printf "%s\n" "$0: could not re-execute with $CONFIG_SHELL" >&2 +exit 255 +fi + + if test x$as_have_required = xno +then : + printf "%s\n" "$0: This script requires a shell more modern than all" + printf "%s\n" "$0: the shells that I found on your system." + if test ${ZSH_VERSION+y} ; then + printf "%s\n" "$0: In particular, zsh $ZSH_VERSION has bugs and should" + printf "%s\n" "$0: be upgraded to zsh 4.3.4 or later." + else + printf "%s\n" "$0: Please tell bug-autoconf@gnu.org about your system, +$0: including any error possibly output before this +$0: message. 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See below for descriptions of some of the useful variables. + +Defaults for the options are specified in brackets. + +Configuration: + -h, --help display this help and exit + --help=short display options specific to this package + --help=recursive display the short help of all the included packages + -V, --version display version information and exit + -q, --quiet, --silent do not print 'checking ...' messages + --cache-file=FILE cache test results in FILE [disabled] + -C, --config-cache alias for '--cache-file=config.cache' + -n, --no-create do not create output files + --srcdir=DIR find the sources in DIR [configure dir or '..'] + +Installation directories: + --prefix=PREFIX install architecture-independent files in PREFIX + [$ac_default_prefix] + --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX + [PREFIX] + +By default, 'make install' will install all the files in +'$ac_default_prefix/bin', '$ac_default_prefix/lib' etc. You can specify +an installation prefix other than '$ac_default_prefix' using '--prefix', +for instance '--prefix=\$HOME'. + +For better control, use the options below. + +Fine tuning of the installation directories: + --bindir=DIR user executables [EPREFIX/bin] + --sbindir=DIR system admin executables [EPREFIX/sbin] + --libexecdir=DIR program executables [EPREFIX/libexec] + --sysconfdir=DIR read-only single-machine data [PREFIX/etc] + --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com] + --localstatedir=DIR modifiable single-machine data [PREFIX/var] + --runstatedir=DIR modifiable per-process data [LOCALSTATEDIR/run] + --libdir=DIR object code libraries [EPREFIX/lib] + --includedir=DIR C header files [PREFIX/include] + --oldincludedir=DIR C header files for non-gcc [/usr/include] + --datarootdir=DIR read-only arch.-independent data root [PREFIX/share] + --datadir=DIR read-only architecture-independent data [DATAROOTDIR] + --infodir=DIR info documentation [DATAROOTDIR/info] + --localedir=DIR locale-dependent data [DATAROOTDIR/locale] + --mandir=DIR man documentation [DATAROOTDIR/man] + --docdir=DIR documentation root [DATAROOTDIR/doc/amuse-uclchem] + --htmldir=DIR html documentation [DOCDIR] + --dvidir=DIR dvi documentation [DOCDIR] + --pdfdir=DIR pdf documentation [DOCDIR] + --psdir=DIR ps documentation [DOCDIR] +_ACEOF + + cat <<\_ACEOF + +System types: + --build=BUILD configure for building on BUILD [guessed] + --host=HOST cross-compile to build programs to run on HOST [BUILD] + --target=TARGET configure for building compilers for TARGET [HOST] +_ACEOF +fi + +if test -n "$ac_init_help"; then + case $ac_init_help in + short | recursive ) echo "Configuration of amuse-uclchem 1.0:";; + esac + cat <<\_ACEOF + +Some influential environment variables: + FC Fortran compiler command + FCFLAGS Fortran compiler flags + LDFLAGS linker flags, e.g. -L if you have libraries in a + nonstandard directory + LIBS libraries to pass to the linker, e.g. -l + CC C compiler command + CFLAGS C compiler flags + CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I if + you have headers in a nonstandard directory + PKG_CONFIG path to pkg-config utility + PKG_CONFIG_PATH + directories to add to pkg-config's search path + PKG_CONFIG_LIBDIR + path overriding pkg-config's built-in search path + STOPCOND_CFLAGS + C compiler flags for STOPCOND, overriding pkg-config + STOPCOND_LIBS + linker flags for STOPCOND, overriding pkg-config + MPIFC MPI Fortran compiler command + +Use these variables to override the choices made by 'configure' or to help +it to find libraries and programs with nonstandard names/locations. + +Report bugs to the package provider. +_ACEOF +ac_status=$? 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+ cd "$ac_pwd" || { ac_status=$?; break; } + done +fi + +test -n "$ac_init_help" && exit $ac_status +if $ac_init_version; then + cat <<\_ACEOF +amuse-uclchem configure 1.0 +generated by GNU Autoconf 2.72 + +Copyright (C) 2023 Free Software Foundation, Inc. +This configure script is free software; the Free Software Foundation +gives unlimited permission to copy, distribute and modify it. +_ACEOF + exit +fi + +## ------------------------ ## +## Autoconf initialization. ## +## ------------------------ ## + +# ac_fn_fc_try_compile LINENO +# --------------------------- +# Try to compile conftest.$ac_ext, and return whether this succeeded. +ac_fn_fc_try_compile () +{ + as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack + rm -f conftest.$ac_objext conftest.beam + if { { ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compile") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + grep -v '^ *+' conftest.err >conftest.er1 + cat conftest.er1 >&5 + mv -f conftest.er1 conftest.err + fi + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } && { + test -z "$ac_fc_werror_flag" || + test ! -s conftest.err + } && test -s conftest.$ac_objext +then : + ac_retval=0 +else case e in #( + e) printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + + ac_retval=1 ;; +esac +fi + eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno + as_fn_set_status $ac_retval + +} # ac_fn_fc_try_compile + +# ac_fn_fc_try_link LINENO +# ------------------------ +# Try to link conftest.$ac_ext, and return whether this succeeded. +ac_fn_fc_try_link () +{ + as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack + rm -f conftest.$ac_objext conftest.beam conftest$ac_exeext + if { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>conftest.err + ac_status=$? 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We do this before executing the actions. + rm -rf conftest.dSYM conftest_ipa8_conftest.oo + eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno + as_fn_set_status $ac_retval + +} # ac_fn_c_try_link +ac_configure_args_raw= +for ac_arg +do + case $ac_arg in + *\'*) + ac_arg=`printf "%s\n" "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;; + esac + as_fn_append ac_configure_args_raw " '$ac_arg'" +done + +case $ac_configure_args_raw in + *$as_nl*) + ac_safe_unquote= ;; + *) + ac_unsafe_z='|&;<>()$`\\"*?[ '' ' # This string ends in space, tab. + ac_unsafe_a="$ac_unsafe_z#~" + ac_safe_unquote="s/ '\\([^$ac_unsafe_a][^$ac_unsafe_z]*\\)'/ \\1/g" + ac_configure_args_raw=` printf "%s\n" "$ac_configure_args_raw" | sed "$ac_safe_unquote"`;; +esac + +cat >config.log <<_ACEOF +This file contains any messages produced by compilers while +running configure, to aid debugging if configure makes a mistake. + +It was created by amuse-uclchem $as_me 1.0, which was +generated by GNU Autoconf 2.72. Invocation command line was + + $ $0$ac_configure_args_raw + +_ACEOF +exec 5>>config.log +{ +cat <<_ASUNAME +## --------- ## +## Platform. ## +## --------- ## + +hostname = `(hostname || uname -n) 2>/dev/null | sed 1q` +uname -m = `(uname -m) 2>/dev/null || echo unknown` +uname -r = `(uname -r) 2>/dev/null || echo unknown` +uname -s = `(uname -s) 2>/dev/null || echo unknown` +uname -v = `(uname -v) 2>/dev/null || echo unknown` + +/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown` +/bin/uname -X = `(/bin/uname -X) 2>/dev/null || echo unknown` + +/bin/arch = `(/bin/arch) 2>/dev/null || echo unknown` +/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown` +/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown` +/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown` +/bin/machine = `(/bin/machine) 2>/dev/null || echo unknown` +/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown` +/bin/universe = `(/bin/universe) 2>/dev/null || echo unknown` + +_ASUNAME + +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + printf "%s\n" "PATH: $as_dir" + done +IFS=$as_save_IFS + +} >&5 + +cat >&5 <<_ACEOF + + +## ----------- ## +## Core tests. ## +## ----------- ## + +_ACEOF + + +# Keep a trace of the command line. +# Strip out --no-create and --no-recursion so they do not pile up. +# Strip out --silent because we don't want to record it for future runs. +# Also quote any args containing shell meta-characters. +# Make two passes to allow for proper duplicate-argument suppression. +ac_configure_args= +ac_configure_args0= +ac_configure_args1= +ac_must_keep_next=false +for ac_pass in 1 2 +do + for ac_arg + do + case $ac_arg in + -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;; + -q | -quiet | --quiet | --quie | --qui | --qu | --q \ + | -silent | --silent | --silen | --sile | --sil) + continue ;; + *\'*) + ac_arg=`printf "%s\n" "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;; + esac + case $ac_pass in + 1) as_fn_append ac_configure_args0 " '$ac_arg'" ;; + 2) + as_fn_append ac_configure_args1 " '$ac_arg'" + if test $ac_must_keep_next = true; then + ac_must_keep_next=false # Got value, back to normal. + else + case $ac_arg in + *=* | --config-cache | -C | -disable-* | --disable-* \ + | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \ + | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \ + | -with-* | --with-* | -without-* | --without-* | --x) + case "$ac_configure_args0 " in + "$ac_configure_args1"*" '$ac_arg' "* ) continue ;; + esac + ;; + -* ) ac_must_keep_next=true ;; + esac + fi + as_fn_append ac_configure_args " '$ac_arg'" + ;; + esac + done +done +{ ac_configure_args0=; unset ac_configure_args0;} +{ ac_configure_args1=; unset ac_configure_args1;} + +# When interrupted or exit'd, cleanup temporary files, and complete +# config.log. We remove comments because anyway the quotes in there +# would cause problems or look ugly. +# WARNING: Use '\'' to represent an apostrophe within the trap. +# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug. +trap 'exit_status=$? + # Sanitize IFS. + IFS=" "" $as_nl" + # Save into config.log some information that might help in debugging. + { + echo + + printf "%s\n" "## ---------------- ## +## Cache variables. ## +## ---------------- ##" + echo + # The following way of writing the cache mishandles newlines in values, +( + for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do + eval ac_val=\$$ac_var + case $ac_val in #( + *${as_nl}*) + case $ac_var in #( + *_cv_*) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5 +printf "%s\n" "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; + esac + case $ac_var in #( + _ | IFS | as_nl) ;; #( + BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( + *) { eval $ac_var=; unset $ac_var;} ;; + esac ;; + esac + done + (set) 2>&1 | + case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #( + *${as_nl}ac_space=\ *) + sed -n \ + "s/'\''/'\''\\\\'\'''\''/g; + s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p" + ;; #( + *) + sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" + ;; + esac | + sort +) + echo + + printf "%s\n" "## ----------------- ## +## Output variables. ## +## ----------------- ##" + echo + for ac_var in $ac_subst_vars + do + eval ac_val=\$$ac_var + case $ac_val in + *\'\''*) ac_val=`printf "%s\n" "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; + esac + printf "%s\n" "$ac_var='\''$ac_val'\''" + done | sort + echo + + if test -n "$ac_subst_files"; then + printf "%s\n" "## ------------------- ## +## File substitutions. ## +## ------------------- ##" + echo + for ac_var in $ac_subst_files + do + eval ac_val=\$$ac_var + case $ac_val in + *\'\''*) ac_val=`printf "%s\n" "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;; + esac + printf "%s\n" "$ac_var='\''$ac_val'\''" + done | sort + echo + fi + + if test -s confdefs.h; then + printf "%s\n" "## ----------- ## +## confdefs.h. ## +## ----------- ##" + echo + cat confdefs.h + echo + fi + test "$ac_signal" != 0 && + printf "%s\n" "$as_me: caught signal $ac_signal" + printf "%s\n" "$as_me: exit $exit_status" + } >&5 + rm -f core *.core core.conftest.* && + rm -f -r conftest* confdefs* conf$$* $ac_clean_files && + exit $exit_status +' 0 +for ac_signal in 1 2 13 15; do + trap 'ac_signal='$ac_signal'; as_fn_exit 1' $ac_signal +done +ac_signal=0 + +# confdefs.h avoids OS command line length limits that DEFS can exceed. +rm -f -r conftest* confdefs.h + +printf "%s\n" "/* confdefs.h */" > confdefs.h + +# Predefined preprocessor variables. + +printf "%s\n" "#define PACKAGE_NAME \"$PACKAGE_NAME\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_TARNAME \"$PACKAGE_TARNAME\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_VERSION \"$PACKAGE_VERSION\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_STRING \"$PACKAGE_STRING\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_BUGREPORT \"$PACKAGE_BUGREPORT\"" >>confdefs.h + +printf "%s\n" "#define PACKAGE_URL \"$PACKAGE_URL\"" >>confdefs.h + + +# Let the site file select an alternate cache file if it wants to. +# Prefer an explicitly selected file to automatically selected ones. +if test -n "$CONFIG_SITE"; then + ac_site_files="$CONFIG_SITE" +elif test "x$prefix" != xNONE; then + ac_site_files="$prefix/share/config.site $prefix/etc/config.site" +else + ac_site_files="$ac_default_prefix/share/config.site $ac_default_prefix/etc/config.site" +fi + +for ac_site_file in $ac_site_files +do + case $ac_site_file in #( + */*) : + ;; #( + *) : + ac_site_file=./$ac_site_file ;; +esac + if test -f "$ac_site_file" && test -r "$ac_site_file"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5 +printf "%s\n" "$as_me: loading site script $ac_site_file" >&6;} + sed 's/^/| /' "$ac_site_file" >&5 + . "$ac_site_file" \ + || { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "failed to load site script $ac_site_file +See 'config.log' for more details" "$LINENO" 5; } + fi +done + +if test -r "$cache_file"; then + # Some versions of bash will fail to source /dev/null (special files + # actually), so we avoid doing that. DJGPP emulates it as a regular file. + if test /dev/null != "$cache_file" && test -f "$cache_file"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: loading cache $cache_file" >&5 +printf "%s\n" "$as_me: loading cache $cache_file" >&6;} + case $cache_file in + [\\/]* | ?:[\\/]* ) . "$cache_file";; + *) . "./$cache_file";; + esac + fi +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: creating cache $cache_file" >&5 +printf "%s\n" "$as_me: creating cache $cache_file" >&6;} + >$cache_file +fi + +# Test code for whether the C compiler supports C89 (global declarations) +ac_c_conftest_c89_globals=' +/* Does the compiler advertise C89 conformance? + Do not test the value of __STDC__, because some compilers set it to 0 + while being otherwise adequately conformant. */ +#if !defined __STDC__ +# error "Compiler does not advertise C89 conformance" +#endif + +#include +#include +struct stat; +/* Most of the following tests are stolen from RCS 5.7 src/conf.sh. */ +struct buf { int x; }; +struct buf * (*rcsopen) (struct buf *, struct stat *, int); +static char *e (char **p, int i) +{ + return p[i]; +} +static char *f (char * (*g) (char **, int), char **p, ...) +{ + char *s; + va_list v; + va_start (v,p); + s = g (p, va_arg (v,int)); + va_end (v); + return s; +} + +/* C89 style stringification. */ +#define noexpand_stringify(a) #a +const char *stringified = noexpand_stringify(arbitrary+token=sequence); + +/* C89 style token pasting. Exercises some of the corner cases that + e.g. old MSVC gets wrong, but not very hard. */ +#define noexpand_concat(a,b) a##b +#define expand_concat(a,b) noexpand_concat(a,b) +extern int vA; +extern int vbee; +#define aye A +#define bee B +int *pvA = &expand_concat(v,aye); +int *pvbee = &noexpand_concat(v,bee); + +/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has + function prototypes and stuff, but not \xHH hex character constants. + These do not provoke an error unfortunately, instead are silently treated + as an "x". The following induces an error, until -std is added to get + proper ANSI mode. Curiously \x00 != x always comes out true, for an + array size at least. It is necessary to write \x00 == 0 to get something + that is true only with -std. */ +int osf4_cc_array ['\''\x00'\'' == 0 ? 1 : -1]; + +/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters + inside strings and character constants. */ +#define FOO(x) '\''x'\'' +int xlc6_cc_array[FOO(a) == '\''x'\'' ? 1 : -1]; + +int test (int i, double x); +struct s1 {int (*f) (int a);}; +struct s2 {int (*f) (double a);}; +int pairnames (int, char **, int *(*)(struct buf *, struct stat *, int), + int, int);' + +# Test code for whether the C compiler supports C89 (body of main). +ac_c_conftest_c89_main=' +ok |= (argc == 0 || f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]); +' + +# Test code for whether the C compiler supports C99 (global declarations) +ac_c_conftest_c99_globals=' +/* Does the compiler advertise C99 conformance? */ +#if !defined __STDC_VERSION__ || __STDC_VERSION__ < 199901L +# error "Compiler does not advertise C99 conformance" +#endif + +// See if C++-style comments work. + +#include +extern int puts (const char *); +extern int printf (const char *, ...); +extern int dprintf (int, const char *, ...); +extern void *malloc (size_t); +extern void free (void *); + +// Check varargs macros. These examples are taken from C99 6.10.3.5. +// dprintf is used instead of fprintf to avoid needing to declare +// FILE and stderr. +#define debug(...) dprintf (2, __VA_ARGS__) +#define showlist(...) puts (#__VA_ARGS__) +#define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) +static void +test_varargs_macros (void) +{ + int x = 1234; + int y = 5678; + debug ("Flag"); + debug ("X = %d\n", x); + showlist (The first, second, and third items.); + report (x>y, "x is %d but y is %d", x, y); +} + +// Check long long types. +#define BIG64 18446744073709551615ull +#define BIG32 4294967295ul +#define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) +#if !BIG_OK + #error "your preprocessor is broken" +#endif +#if BIG_OK +#else + #error "your preprocessor is broken" +#endif +static long long int bignum = -9223372036854775807LL; +static unsigned long long int ubignum = BIG64; + +struct incomplete_array +{ + int datasize; + double data[]; +}; + +struct named_init { + int number; + const wchar_t *name; + double average; +}; + +typedef const char *ccp; + +static inline int +test_restrict (ccp restrict text) +{ + // Iterate through items via the restricted pointer. + // Also check for declarations in for loops. + for (unsigned int i = 0; *(text+i) != '\''\0'\''; ++i) + continue; + return 0; +} + +// Check varargs and va_copy. +static bool +test_varargs (const char *format, ...) +{ + va_list args; + va_start (args, format); + va_list args_copy; + va_copy (args_copy, args); + + const char *str = ""; + int number = 0; + float fnumber = 0; + + while (*format) + { + switch (*format++) + { + case '\''s'\'': // string + str = va_arg (args_copy, const char *); + break; + case '\''d'\'': // int + number = va_arg (args_copy, int); + break; + case '\''f'\'': // float + fnumber = va_arg (args_copy, double); + break; + default: + break; + } + } + va_end (args_copy); + va_end (args); + + return *str && number && fnumber; +} +' + +# Test code for whether the C compiler supports C99 (body of main). +ac_c_conftest_c99_main=' + // Check bool. + _Bool success = false; + success |= (argc != 0); + + // Check restrict. + if (test_restrict ("String literal") == 0) + success = true; + char *restrict newvar = "Another string"; + + // Check varargs. + success &= test_varargs ("s, d'\'' f .", "string", 65, 34.234); + test_varargs_macros (); + + // Check flexible array members. + struct incomplete_array *ia = + malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); + ia->datasize = 10; + for (int i = 0; i < ia->datasize; ++i) + ia->data[i] = i * 1.234; + // Work around memory leak warnings. + free (ia); + + // Check named initializers. + struct named_init ni = { + .number = 34, + .name = L"Test wide string", + .average = 543.34343, + }; + + ni.number = 58; + + int dynamic_array[ni.number]; + dynamic_array[0] = argv[0][0]; + dynamic_array[ni.number - 1] = 543; + + // work around unused variable warnings + ok |= (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == '\''x'\'' + || dynamic_array[ni.number - 1] != 543); +' + +# Test code for whether the C compiler supports C11 (global declarations) +ac_c_conftest_c11_globals=' +/* Does the compiler advertise C11 conformance? */ +#if !defined __STDC_VERSION__ || __STDC_VERSION__ < 201112L +# error "Compiler does not advertise C11 conformance" +#endif + +// Check _Alignas. +char _Alignas (double) aligned_as_double; +char _Alignas (0) no_special_alignment; +extern char aligned_as_int; +char _Alignas (0) _Alignas (int) aligned_as_int; + +// Check _Alignof. +enum +{ + int_alignment = _Alignof (int), + int_array_alignment = _Alignof (int[100]), + char_alignment = _Alignof (char) +}; +_Static_assert (0 < -_Alignof (int), "_Alignof is signed"); + +// Check _Noreturn. +int _Noreturn does_not_return (void) { for (;;) continue; } + +// Check _Static_assert. +struct test_static_assert +{ + int x; + _Static_assert (sizeof (int) <= sizeof (long int), + "_Static_assert does not work in struct"); + long int y; +}; + +// Check UTF-8 literals. +#define u8 syntax error! +char const utf8_literal[] = u8"happens to be ASCII" "another string"; + +// Check duplicate typedefs. +typedef long *long_ptr; +typedef long int *long_ptr; +typedef long_ptr long_ptr; + +// Anonymous structures and unions -- taken from C11 6.7.2.1 Example 1. +struct anonymous +{ + union { + struct { int i; int j; }; + struct { int k; long int l; } w; + }; + int m; +} v1; +' + +# Test code for whether the C compiler supports C11 (body of main). +ac_c_conftest_c11_main=' + _Static_assert ((offsetof (struct anonymous, i) + == offsetof (struct anonymous, w.k)), + "Anonymous union alignment botch"); + v1.i = 2; + v1.w.k = 5; + ok |= v1.i != 5; +' + +# Test code for whether the C compiler supports C11 (complete). +ac_c_conftest_c11_program="${ac_c_conftest_c89_globals} +${ac_c_conftest_c99_globals} +${ac_c_conftest_c11_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + ${ac_c_conftest_c99_main} + ${ac_c_conftest_c11_main} + return ok; +} +" + +# Test code for whether the C compiler supports C99 (complete). +ac_c_conftest_c99_program="${ac_c_conftest_c89_globals} +${ac_c_conftest_c99_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + ${ac_c_conftest_c99_main} + return ok; +} +" + +# Test code for whether the C compiler supports C89 (complete). +ac_c_conftest_c89_program="${ac_c_conftest_c89_globals} + +int +main (int argc, char **argv) +{ + int ok = 0; + ${ac_c_conftest_c89_main} + return ok; +} +" + + +# Auxiliary files required by this configure script. +ac_aux_files="config.guess config.sub" + +# Locations in which to look for auxiliary files. +ac_aux_dir_candidates="${srcdir}/shared" + +# Search for a directory containing all of the required auxiliary files, +# $ac_aux_files, from the $PATH-style list $ac_aux_dir_candidates. +# If we don't find one directory that contains all the files we need, +# we report the set of missing files from the *first* directory in +# $ac_aux_dir_candidates and give up. +ac_missing_aux_files="" +ac_first_candidate=: +printf "%s\n" "$as_me:${as_lineno-$LINENO}: looking for aux files: $ac_aux_files" >&5 +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +as_found=false +for as_dir in $ac_aux_dir_candidates +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + as_found=: + + printf "%s\n" "$as_me:${as_lineno-$LINENO}: trying $as_dir" >&5 + ac_aux_dir_found=yes + ac_install_sh= + for ac_aux in $ac_aux_files + do + # As a special case, if "install-sh" is required, that requirement + # can be satisfied by any of "install-sh", "install.sh", or "shtool", + # and $ac_install_sh is set appropriately for whichever one is found. + if test x"$ac_aux" = x"install-sh" + then + if test -f "${as_dir}install-sh"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}install-sh found" >&5 + ac_install_sh="${as_dir}install-sh -c" + elif test -f "${as_dir}install.sh"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}install.sh found" >&5 + ac_install_sh="${as_dir}install.sh -c" + elif test -f "${as_dir}shtool"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}shtool found" >&5 + ac_install_sh="${as_dir}shtool install -c" + else + ac_aux_dir_found=no + if $ac_first_candidate; then + ac_missing_aux_files="${ac_missing_aux_files} install-sh" + else + break + fi + fi + else + if test -f "${as_dir}${ac_aux}"; then + printf "%s\n" "$as_me:${as_lineno-$LINENO}: ${as_dir}${ac_aux} found" >&5 + else + ac_aux_dir_found=no + if $ac_first_candidate; then + ac_missing_aux_files="${ac_missing_aux_files} ${ac_aux}" + else + break + fi + fi + fi + done + if test "$ac_aux_dir_found" = yes; then + ac_aux_dir="$as_dir" + break + fi + ac_first_candidate=false + + as_found=false +done +IFS=$as_save_IFS +if $as_found +then : + +else case e in #( + e) as_fn_error $? "cannot find required auxiliary files:$ac_missing_aux_files" "$LINENO" 5 ;; +esac +fi + + +# These three variables are undocumented and unsupported, +# and are intended to be withdrawn in a future Autoconf release. +# They can cause serious problems if a builder's source tree is in a directory +# whose full name contains unusual characters. +if test -f "${ac_aux_dir}config.guess"; then + ac_config_guess="$SHELL ${ac_aux_dir}config.guess" +fi +if test -f "${ac_aux_dir}config.sub"; then + ac_config_sub="$SHELL ${ac_aux_dir}config.sub" +fi +if test -f "$ac_aux_dir/configure"; then + ac_configure="$SHELL ${ac_aux_dir}configure" +fi + +# Check that the precious variables saved in the cache have kept the same +# value. +ac_cache_corrupted=false +for ac_var in $ac_precious_vars; do + eval ac_old_set=\$ac_cv_env_${ac_var}_set + eval ac_new_set=\$ac_env_${ac_var}_set + eval ac_old_val=\$ac_cv_env_${ac_var}_value + eval ac_new_val=\$ac_env_${ac_var}_value + case $ac_old_set,$ac_new_set in + set,) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' was set to '$ac_old_val' in the previous run" >&5 +printf "%s\n" "$as_me: error: '$ac_var' was set to '$ac_old_val' in the previous run" >&2;} + ac_cache_corrupted=: ;; + ,set) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' was not set in the previous run" >&5 +printf "%s\n" "$as_me: error: '$ac_var' was not set in the previous run" >&2;} + ac_cache_corrupted=: ;; + ,);; + *) + if test "x$ac_old_val" != "x$ac_new_val"; then + # differences in whitespace do not lead to failure. + ac_old_val_w=`echo x $ac_old_val` + ac_new_val_w=`echo x $ac_new_val` + if test "$ac_old_val_w" != "$ac_new_val_w"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: '$ac_var' has changed since the previous run:" >&5 +printf "%s\n" "$as_me: error: '$ac_var' has changed since the previous run:" >&2;} + ac_cache_corrupted=: + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: warning: ignoring whitespace changes in '$ac_var' since the previous run:" >&5 +printf "%s\n" "$as_me: warning: ignoring whitespace changes in '$ac_var' since the previous run:" >&2;} + eval $ac_var=\$ac_old_val + fi + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: former value: '$ac_old_val'" >&5 +printf "%s\n" "$as_me: former value: '$ac_old_val'" >&2;} + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: current value: '$ac_new_val'" >&5 +printf "%s\n" "$as_me: current value: '$ac_new_val'" >&2;} + fi;; + esac + # Pass precious variables to config.status. + if test "$ac_new_set" = set; then + case $ac_new_val in + *\'*) ac_arg=$ac_var=`printf "%s\n" "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;; + *) ac_arg=$ac_var=$ac_new_val ;; + esac + case " $ac_configure_args " in + *" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy. + *) as_fn_append ac_configure_args " '$ac_arg'" ;; + esac + fi +done +if $ac_cache_corrupted; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5 +printf "%s\n" "$as_me: error: changes in the environment can compromise the build" >&2;} + as_fn_error $? "run '${MAKE-make} distclean' and/or 'rm $cache_file' + and start over" "$LINENO" 5 +fi +## -------------------- ## +## Main body of script. ## +## -------------------- ## + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +# Pick up Conda env or virtualenv + + if test "x$VIRTUAL_ENV" != x +then : + + CFLAGS="$CFLAGS -I${VIRTUAL_ENV}/include" + CXXFLAGS="$CXXFLAGS -I${VIRTUAL_ENV}/include" + FFLAGS="$FFLAGS -I${VIRTUAL_ENV}/include" + FCFLAGS="$FCFLAGS -I${VIRTUAL_ENV}/include" + LDFLAGS="$LDFLAGS -L${VIRTUAL_ENV}/lib -Wl,-rpath,${VIRTUAL_ENV}/lib" + PKG_CONFIG_PATH="$VIRTUAL_ENV/lib/pkgconfig:$PKG_CONFIG_PATH" + +fi + + if test "x$CONDA_PREFIX" != x +then : + + # Conda does not set FCFLAGS, so we copy from FFLAGS here + FCFLAGS="$FFLAGS" + LDFLAGS="$LDFLAGS -L${CONDA_PREFIX}/lib -Wl,-rpath,${CONDA_PREFIX}/lib" + # Conda pkg-config includes this already, but in case we have one from + # the system... + PKG_CONFIG_PATH="$PKG_CONFIG_PATH:${CONDA_PREFIX}/lib/pkgconfig" + +fi + # Needs to be exported or the PKG_CHECK_MODULES macro won't see it + export PKG_CONFIG_PATH + + + +# Set CPU_COUNT + + + + # Make sure we can run config.sub. +$SHELL "${ac_aux_dir}config.sub" sun4 >/dev/null 2>&1 || + as_fn_error $? "cannot run $SHELL ${ac_aux_dir}config.sub" "$LINENO" 5 + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking build system type" >&5 +printf %s "checking build system type... " >&6; } +if test ${ac_cv_build+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_build_alias=$build_alias +test "x$ac_build_alias" = x && + ac_build_alias=`$SHELL "${ac_aux_dir}config.guess"` +test "x$ac_build_alias" = x && + as_fn_error $? "cannot guess build type; you must specify one" "$LINENO" 5 +ac_cv_build=`$SHELL "${ac_aux_dir}config.sub" $ac_build_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $ac_build_alias failed" "$LINENO" 5 + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_build" >&5 +printf "%s\n" "$ac_cv_build" >&6; } +case $ac_cv_build in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical build" "$LINENO" 5;; +esac +build=$ac_cv_build +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_build +shift +build_cpu=$1 +build_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +build_os=$* +IFS=$ac_save_IFS +case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking host system type" >&5 +printf %s "checking host system type... " >&6; } +if test ${ac_cv_host+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test "x$host_alias" = x; then + ac_cv_host=$ac_cv_build +else + ac_cv_host=`$SHELL "${ac_aux_dir}config.sub" $host_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $host_alias failed" "$LINENO" 5 +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_host" >&5 +printf "%s\n" "$ac_cv_host" >&6; } +case $ac_cv_host in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical host" "$LINENO" 5;; +esac +host=$ac_cv_host +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_host +shift +host_cpu=$1 +host_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +host_os=$* +IFS=$ac_save_IFS +case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for grep that handles long lines and -e" >&5 +printf %s "checking for grep that handles long lines and -e... " >&6; } +if test ${ac_cv_path_GREP+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -z "$GREP"; then + ac_path_GREP_found=false + # Loop through the user's path and test for each of PROGNAME-LIST + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_prog in grep ggrep + do + for ac_exec_ext in '' $ac_executable_extensions; do + ac_path_GREP="$as_dir$ac_prog$ac_exec_ext" + as_fn_executable_p "$ac_path_GREP" || continue +# Check for GNU ac_path_GREP and select it if it is found. + # Check for GNU $ac_path_GREP +case `"$ac_path_GREP" --version 2>&1` in #( +*GNU*) + ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;; +#( +*) + ac_count=0 + printf %s 0123456789 >"conftest.in" + while : + do + cat "conftest.in" "conftest.in" >"conftest.tmp" + mv "conftest.tmp" "conftest.in" + cp "conftest.in" "conftest.nl" + printf "%s\n" 'GREP' >> "conftest.nl" + "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break + diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break + as_fn_arith $ac_count + 1 && ac_count=$as_val + if test $ac_count -gt ${ac_path_GREP_max-0}; then + # Best one so far, save it but keep looking for a better one + ac_cv_path_GREP="$ac_path_GREP" + ac_path_GREP_max=$ac_count + fi + # 10*(2^10) chars as input seems more than enough + test $ac_count -gt 10 && break + done + rm -f conftest.in conftest.tmp conftest.nl conftest.out;; +esac + + $ac_path_GREP_found && break 3 + done + done + done +IFS=$as_save_IFS + if test -z "$ac_cv_path_GREP"; then + as_fn_error $? "no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5 + fi +else + ac_cv_path_GREP=$GREP +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_GREP" >&5 +printf "%s\n" "$ac_cv_path_GREP" >&6; } + GREP="$ac_cv_path_GREP" + + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for egrep" >&5 +printf %s "checking for egrep... " >&6; } +if test ${ac_cv_path_EGREP+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if echo a | $GREP -E '(a|b)' >/dev/null 2>&1 + then ac_cv_path_EGREP="$GREP -E" + else + if test -z "$EGREP"; then + ac_path_EGREP_found=false + # Loop through the user's path and test for each of PROGNAME-LIST + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_prog in egrep + do + for ac_exec_ext in '' $ac_executable_extensions; do + ac_path_EGREP="$as_dir$ac_prog$ac_exec_ext" + as_fn_executable_p "$ac_path_EGREP" || continue +# Check for GNU ac_path_EGREP and select it if it is found. + # Check for GNU $ac_path_EGREP +case `"$ac_path_EGREP" --version 2>&1` in #( +*GNU*) + ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;; +#( +*) + ac_count=0 + printf %s 0123456789 >"conftest.in" + while : + do + cat "conftest.in" "conftest.in" >"conftest.tmp" + mv "conftest.tmp" "conftest.in" + cp "conftest.in" "conftest.nl" + printf "%s\n" 'EGREP' >> "conftest.nl" + "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break + diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break + as_fn_arith $ac_count + 1 && ac_count=$as_val + if test $ac_count -gt ${ac_path_EGREP_max-0}; then + # Best one so far, save it but keep looking for a better one + ac_cv_path_EGREP="$ac_path_EGREP" + ac_path_EGREP_max=$ac_count + fi + # 10*(2^10) chars as input seems more than enough + test $ac_count -gt 10 && break + done + rm -f conftest.in conftest.tmp conftest.nl conftest.out;; +esac + + $ac_path_EGREP_found && break 3 + done + done + done +IFS=$as_save_IFS + if test -z "$ac_cv_path_EGREP"; then + as_fn_error $? "no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5 + fi +else + ac_cv_path_EGREP=$EGREP +fi + + fi ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_EGREP" >&5 +printf "%s\n" "$ac_cv_path_EGREP" >&6; } + EGREP="$ac_cv_path_EGREP" + + EGREP_TRADITIONAL=$EGREP + ac_cv_path_EGREP_TRADITIONAL=$EGREP + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking the number of available CPUs" >&5 +printf %s "checking the number of available CPUs... " >&6; } + CPU_COUNT="0" + + # Try generic methods + + # 'getconf' is POSIX utility, but '_NPROCESSORS_ONLN' and + # 'NPROCESSORS_ONLN' are platform-specific + command -v getconf >/dev/null 2>&1 && \ + CPU_COUNT=`getconf _NPROCESSORS_ONLN 2>/dev/null || getconf NPROCESSORS_ONLN 2>/dev/null` || CPU_COUNT="0" + if test "$CPU_COUNT" -gt "0" 2>/dev/null || ! command -v nproc >/dev/null 2>&1 +then : + : # empty +else case e in #( + e) # 'nproc' is part of GNU Coreutils and is widely available + CPU_COUNT=`OMP_NUM_THREADS='' nproc 2>/dev/null` || CPU_COUNT=`nproc 2>/dev/null` || CPU_COUNT="0" + ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null +then : + : # empty +else case e in #( + e) # Try platform-specific preferred methods + case $host_os in #( + *linux*) : + CPU_COUNT=`lscpu -p 2>/dev/null | $EGREP -e '^[0-9]+,' -c` || CPU_COUNT="0" ;; #( + *darwin*) : + CPU_COUNT=`sysctl -n hw.logicalcpu 2>/dev/null` || CPU_COUNT="0" ;; #( + freebsd*) : + command -v sysctl >/dev/null 2>&1 && CPU_COUNT=`sysctl -n kern.smp.cpus 2>/dev/null` || CPU_COUNT="0" ;; #( + netbsd*) : + command -v sysctl >/dev/null 2>&1 && CPU_COUNT=`sysctl -n hw.ncpuonline 2>/dev/null` || CPU_COUNT="0" ;; #( + solaris*) : + command -v psrinfo >/dev/null 2>&1 && CPU_COUNT=`psrinfo 2>/dev/null | $EGREP -e '^[0-9].*on-line' -c 2>/dev/null` || CPU_COUNT="0" ;; #( + mingw*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + msys*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + cygwin*) : + CPU_COUNT=`ls -qpU1 /proc/registry/HKEY_LOCAL_MACHINE/HARDWARE/DESCRIPTION/System/CentralProcessor/ 2>/dev/null | $EGREP -e '^[0-9]+/' -c` || CPU_COUNT="0" ;; #( + *) : + ;; +esac ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null || ! command -v sysctl >/dev/null 2>&1 +then : + : # empty +else case e in #( + e) # Try less preferred generic method + # 'hw.ncpu' exist on many platforms, but not on GNU/Linux + CPU_COUNT=`sysctl -n hw.ncpu 2>/dev/null` || CPU_COUNT="0" + ;; +esac +fi + if test "$CPU_COUNT" -gt "0" 2>/dev/null +then : + : # empty +else case e in #( + e) # Try platform-specific fallback methods + # They can be less accurate and slower then preferred methods + case $host_os in #( + *linux*) : + CPU_COUNT=`$EGREP -e '^processor' -c /proc/cpuinfo 2>/dev/null` || CPU_COUNT="0" ;; #( + *darwin*) : + CPU_COUNT=`system_profiler SPHardwareDataType 2>/dev/null | $EGREP -i -e 'number of cores:'|cut -d : -f 2 -s|tr -d ' '` || CPU_COUNT="0" ;; #( + freebsd*) : + CPU_COUNT=`dmesg 2>/dev/null| $EGREP -e '^cpu[0-9]+: '|sort -u|$EGREP -e '^' -c` || CPU_COUNT="0" ;; #( + netbsd*) : + CPU_COUNT=`command -v cpuctl >/dev/null 2>&1 && cpuctl list 2>/dev/null| $EGREP -e '^[0-9]+ .* online ' -c` || \ + CPU_COUNT=`dmesg 2>/dev/null| $EGREP -e '^cpu[0-9]+ at'|sort -u|$EGREP -e '^' -c` || CPU_COUNT="0" ;; #( + solaris*) : + command -v kstat >/dev/null 2>&1 && CPU_COUNT=`kstat -m cpu_info -s state -p 2>/dev/null | $EGREP -c -e 'on-line'` || \ + CPU_COUNT=`kstat -m cpu_info 2>/dev/null | $EGREP -c -e 'module: cpu_info'` || CPU_COUNT="0" ;; #( + mingw*) : + if CPU_COUNT=`reg query 'HKLM\\Hardware\\Description\\System\\CentralProcessor' 2>/dev/null | $EGREP -e '\\\\[0-9]+$' -c` +then : + : # empty +else case e in #( + e) test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; +esac +fi ;; #( + msys*) : + test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; #( + cygwin*) : + test "$NUMBER_OF_PROCESSORS" -gt "0" 2>/dev/null && CPU_COUNT="$NUMBER_OF_PROCESSORS" ;; #( + *) : + ;; +esac ;; +esac +fi + if test "x$CPU_COUNT" != "x0" && test "$CPU_COUNT" -gt 0 2>/dev/null +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CPU_COUNT" >&5 +printf "%s\n" "$CPU_COUNT" >&6; } + +else case e in #( + e) CPU_COUNT="1" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unable to detect (assuming 1)" >&5 +printf "%s\n" "unable to detect (assuming 1)" >&6; } + ;; +esac +fi + + +# Find the compiler(s) +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu +if test -n "$ac_tool_prefix"; then + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_FC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$FC"; then + ac_cv_prog_FC="$FC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_FC="$ac_tool_prefix$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +FC=$ac_cv_prog_FC +if test -n "$FC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $FC" >&5 +printf "%s\n" "$FC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$FC" && break + done +fi +if test -z "$FC"; then + ac_ct_FC=$FC + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_FC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_FC"; then + ac_cv_prog_ac_ct_FC="$ac_ct_FC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_FC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_FC=$ac_cv_prog_ac_ct_FC +if test -n "$ac_ct_FC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_FC" >&5 +printf "%s\n" "$ac_ct_FC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$ac_ct_FC" && break +done + + if test "x$ac_ct_FC" = x; then + FC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + FC=$ac_ct_FC + fi +fi + + +# Provide some information about the compiler. +printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for Fortran compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +for ac_option in --version -v -V -qversion; do + { { ac_try="$ac_compiler $ac_option >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compiler $ac_option >&5") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + sed '10a\ +... rest of stderr output deleted ... + 10q' conftest.err >conftest.er1 + cat conftest.er1 >&5 + fi + rm -f conftest.er1 conftest.err + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +done +rm -f a.out + +cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out" +# Try to create an executable without -o first, disregard a.out. +# It will help us diagnose broken compilers, and finding out an intuition +# of exeext. +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the Fortran compiler works" >&5 +printf %s "checking whether the Fortran compiler works... " >&6; } +ac_link_default=`printf "%s\n" "$ac_link" | sed 's/ -o *conftest[^ ]*//'` + +# The possible output files: +ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*" + +ac_rmfiles= +for ac_file in $ac_files +do + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + * ) ac_rmfiles="$ac_rmfiles $ac_file";; + esac +done +rm -f $ac_rmfiles + +if { { ac_try="$ac_link_default" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link_default") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + # Autoconf-2.13 could set the ac_cv_exeext variable to 'no'. +# So ignore a value of 'no', otherwise this would lead to 'EXEEXT = no' +# in a Makefile. We should not override ac_cv_exeext if it was cached, +# so that the user can short-circuit this test for compilers unknown to +# Autoconf. +for ac_file in $ac_files '' +do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) + ;; + [ab].out ) + # We found the default executable, but exeext='' is most + # certainly right. + break;; + *.* ) + if test ${ac_cv_exeext+y} && test "$ac_cv_exeext" != no; + then :; else + ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + fi + # We set ac_cv_exeext here because the later test for it is not + # safe: cross compilers may not add the suffix if given an '-o' + # argument, so we may need to know it at that point already. + # Even if this section looks crufty: it has the advantage of + # actually working. + break;; + * ) + break;; + esac +done +test "$ac_cv_exeext" = no && ac_cv_exeext= + +else case e in #( + e) ac_file='' ;; +esac +fi +if test -z "$ac_file" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error 77 "Fortran compiler cannot create executables +See 'config.log' for more details" "$LINENO" 5; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for Fortran compiler default output file name" >&5 +printf %s "checking for Fortran compiler default output file name... " >&6; } +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5 +printf "%s\n" "$ac_file" >&6; } +ac_exeext=$ac_cv_exeext + +rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out +ac_clean_files=$ac_clean_files_save +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5 +printf %s "checking for suffix of executables... " >&6; } +if { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + # If both 'conftest.exe' and 'conftest' are 'present' (well, observable) +# catch 'conftest.exe'. For instance with Cygwin, 'ls conftest' will +# work properly (i.e., refer to 'conftest.exe'), while it won't with +# 'rm'. +for ac_file in conftest.exe conftest conftest.*; do + test -f "$ac_file" || continue + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; + *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` + break;; + * ) break;; + esac +done +else case e in #( + e) { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "cannot compute suffix of executables: cannot compile and link +See 'config.log' for more details" "$LINENO" 5; } ;; +esac +fi +rm -f conftest conftest$ac_cv_exeext +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5 +printf "%s\n" "$ac_cv_exeext" >&6; } + +rm -f conftest.$ac_ext +EXEEXT=$ac_cv_exeext +ac_exeext=$EXEEXT +cat > conftest.$ac_ext <<_ACEOF + program main + open(unit=9,file='conftest.out') + close(unit=9) + + end +_ACEOF +ac_clean_files="$ac_clean_files conftest.out" +# Check that the compiler produces executables we can run. If not, either +# the compiler is broken, or we cross compile. +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5 +printf %s "checking whether we are cross compiling... " >&6; } +if test "$cross_compiling" != yes; then + { { ac_try="$ac_link" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_link") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } + if { ac_try='./conftest$ac_cv_exeext' + { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; }; then + cross_compiling=no + else + if test "$cross_compiling" = maybe; then + cross_compiling=yes + else + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error 77 "cannot run Fortran compiled programs. +If you meant to cross compile, use '--host'. +See 'config.log' for more details" "$LINENO" 5; } + fi + fi +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5 +printf "%s\n" "$cross_compiling" >&6; } + +rm -f conftest.$ac_ext conftest$ac_cv_exeext \ + conftest.o conftest.obj conftest.out +ac_clean_files=$ac_clean_files_save +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5 +printf %s "checking for suffix of object files... " >&6; } +if test ${ac_cv_objext+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +rm -f conftest.o conftest.obj +if { { ac_try="$ac_compile" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compile") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +then : + for ac_file in conftest.o conftest.obj conftest.*; do + test -f "$ac_file" || continue; + case $ac_file in + *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;; + *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'` + break;; + esac +done +else case e in #( + e) printf "%s\n" "$as_me: failed program was:" >&5 +sed 's/^/| /' conftest.$ac_ext >&5 + +{ { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "cannot compute suffix of object files: cannot compile +See 'config.log' for more details" "$LINENO" 5; } ;; +esac +fi +rm -f conftest.$ac_cv_objext conftest.$ac_ext ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5 +printf "%s\n" "$ac_cv_objext" >&6; } +OBJEXT=$ac_cv_objext +ac_objext=$OBJEXT +# If we don't use '.F' as extension, the preprocessor is not run on the +# input file. (Note that this only needs to work for GNU compilers.) +ac_save_ext=$ac_ext +ac_ext=F +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the compiler supports GNU Fortran" >&5 +printf %s "checking whether the compiler supports GNU Fortran... " >&6; } +if test ${ac_cv_fc_compiler_gnu+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat > conftest.$ac_ext <<_ACEOF + program main +#ifndef __GNUC__ + choke me +#endif + + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + ac_compiler_gnu=yes +else case e in #( + e) ac_compiler_gnu=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +ac_cv_fc_compiler_gnu=$ac_compiler_gnu + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_fc_compiler_gnu" >&5 +printf "%s\n" "$ac_cv_fc_compiler_gnu" >&6; } +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + +ac_ext=$ac_save_ext +ac_test_FCFLAGS=${FCFLAGS+y} +ac_save_FCFLAGS=$FCFLAGS +FCFLAGS= +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether $FC accepts -g" >&5 +printf %s "checking whether $FC accepts -g... " >&6; } +if test ${ac_cv_prog_fc_g+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) FCFLAGS=-g +cat > conftest.$ac_ext <<_ACEOF + program main + + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + ac_cv_prog_fc_g=yes +else case e in #( + e) ac_cv_prog_fc_g=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_fc_g" >&5 +printf "%s\n" "$ac_cv_prog_fc_g" >&6; } +if test $ac_test_FCFLAGS; then + FCFLAGS=$ac_save_FCFLAGS +elif test $ac_cv_prog_fc_g = yes; then + if test "x$ac_cv_fc_compiler_gnu" = xyes; then + FCFLAGS="-g -O2" + else + FCFLAGS="-g" + fi +else + if test "x$ac_cv_fc_compiler_gnu" = xyes; then + FCFLAGS="-O2" + else + FCFLAGS= + fi +fi + +if test $ac_compiler_gnu = yes; then + GFC=yes +else + GFC= +fi +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking if the fortran compiler supports iso c binding" >&5 +printf %s "checking if the fortran compiler supports iso c binding... " >&6; } +cat > conftest.$ac_ext <<_ACEOF + + + program conftest + use ISO_C_BINDING + integer, dimension(10) :: n + end + + +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + + FC_ISO_C_BINDINGS="yes" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ax_cv_fc_iso_c_bindings" >&5 +printf "%s\n" "$ax_cv_fc_iso_c_bindings" >&6; } + +else case e in #( + e) + FC_ISO_C_BINDINGS="no" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no, fortran codes and sockets or embedding will not work." >&5 +printf "%s\n" "no, fortran codes and sockets or embedding will not work." >&6; } + ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +# The intel compiler sometimes generates these work.pc and .pcl files +rm -f work.pc work.pcl +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + +# Find tools for creating static libraries +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking target system type" >&5 +printf %s "checking target system type... " >&6; } +if test ${ac_cv_target+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test "x$target_alias" = x; then + ac_cv_target=$ac_cv_host +else + ac_cv_target=`$SHELL "${ac_aux_dir}config.sub" $target_alias` || + as_fn_error $? "$SHELL ${ac_aux_dir}config.sub $target_alias failed" "$LINENO" 5 +fi + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_target" >&5 +printf "%s\n" "$ac_cv_target" >&6; } +case $ac_cv_target in +*-*-*) ;; +*) as_fn_error $? "invalid value of canonical target" "$LINENO" 5;; +esac +target=$ac_cv_target +ac_save_IFS=$IFS; IFS='-' +set x $ac_cv_target +shift +target_cpu=$1 +target_vendor=$2 +shift; shift +# Remember, the first character of IFS is used to create $*, +# except with old shells: +target_os=$* +IFS=$ac_save_IFS +case $target_os in *\ *) target_os=`echo "$target_os" | sed 's/ /-/g'`;; esac + + +# The aliases save the names the user supplied, while $host etc. +# will get canonicalized. +test -n "$target_alias" && + test "$program_prefix$program_suffix$program_transform_name" = \ + NONENONEs,x,x, && + program_prefix=${target_alias}- +# Extract the first word of "$target_alias-ar", so it can be a program name with args. +set dummy $target_alias-ar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_AR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$AR"; then + ac_cv_prog_AR="$AR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_AR="$target_alias-ar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +AR=$ac_cv_prog_AR +if test -n "$AR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $AR" >&5 +printf "%s\n" "$AR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +if test -z "$ac_cv_prog_AR"; then + if test "$build" = "$target"; then + ac_ct_AR=$AR + # Extract the first word of "ar", so it can be a program name with args. +set dummy ar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_AR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_AR"; then + ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_AR="ar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + test -z "$ac_cv_prog_ac_ct_AR" && ac_cv_prog_ac_ct_AR=":" +fi ;; +esac +fi +ac_ct_AR=$ac_cv_prog_ac_ct_AR +if test -n "$ac_ct_AR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_AR" >&5 +printf "%s\n" "$ac_ct_AR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + AR=$ac_ct_AR + else + AR=":" + fi +else + AR="$ac_cv_prog_AR" +fi + +if test $AR = ":" +then : + as_fn_error $? "ar command not found." "$LINENO" 5 +fi + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. +set dummy ${ac_tool_prefix}ranlib; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_RANLIB+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$RANLIB"; then + ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +RANLIB=$ac_cv_prog_RANLIB +if test -n "$RANLIB"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5 +printf "%s\n" "$RANLIB" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_RANLIB"; then + ac_ct_RANLIB=$RANLIB + # Extract the first word of "ranlib", so it can be a program name with args. +set dummy ranlib; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_RANLIB+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_RANLIB"; then + ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_RANLIB="ranlib" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB +if test -n "$ac_ct_RANLIB"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5 +printf "%s\n" "$ac_ct_RANLIB" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_RANLIB" = x; then + RANLIB=":" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + RANLIB=$ac_ct_RANLIB + fi +else + RANLIB="$ac_cv_prog_RANLIB" +fi + +if test $RANLIB = ":" +then : + as_fn_error $? "ranlib command not found." "$LINENO" 5 +fi + +# Find tools to download and unpack with + + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}wget", so it can be a program name with args. +set dummy ${ac_tool_prefix}wget; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_WGET+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$WGET"; then + ac_cv_prog_WGET="$WGET" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_WGET="${ac_tool_prefix}wget" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +WGET=$ac_cv_prog_WGET +if test -n "$WGET"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $WGET" >&5 +printf "%s\n" "$WGET" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_WGET"; then + ac_ct_WGET=$WGET + # Extract the first word of "wget", so it can be a program name with args. +set dummy wget; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_WGET+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_WGET"; then + ac_cv_prog_ac_ct_WGET="$ac_ct_WGET" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_WGET="wget" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_WGET=$ac_cv_prog_ac_ct_WGET +if test -n "$ac_ct_WGET"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_WGET" >&5 +printf "%s\n" "$ac_ct_WGET" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_WGET" = x; then + WGET="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + WGET=$ac_ct_WGET + fi +else + WGET="$ac_cv_prog_WGET" +fi + + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}curl", so it can be a program name with args. +set dummy ${ac_tool_prefix}curl; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CURL+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CURL"; then + ac_cv_prog_CURL="$CURL" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CURL="${ac_tool_prefix}curl" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CURL=$ac_cv_prog_CURL +if test -n "$CURL"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CURL" >&5 +printf "%s\n" "$CURL" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CURL"; then + ac_ct_CURL=$CURL + # Extract the first word of "curl", so it can be a program name with args. +set dummy curl; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CURL+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CURL"; then + ac_cv_prog_ac_ct_CURL="$ac_ct_CURL" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CURL="curl" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CURL=$ac_cv_prog_ac_ct_CURL +if test -n "$ac_ct_CURL"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CURL" >&5 +printf "%s\n" "$ac_ct_CURL" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CURL" = x; then + CURL="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CURL=$ac_ct_CURL + fi +else + CURL="$ac_cv_prog_CURL" +fi + + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for a wget or curl to download files with" >&5 +printf %s "checking for a wget or curl to download files with... " >&6; } + if test "x$WGET" != "x" + then + # The MESA SDK server rejects wget, this is the official work-around + DOWNLOAD="$WGET --progress=bar:force:noscroll --user-agent='' -O -" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + if test "x$CURL" != "x" + then + DOWNLOAD="$CURL -L" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + fi + fi + + + +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}tar", so it can be a program name with args. +set dummy ${ac_tool_prefix}tar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_TAR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$TAR"; then + ac_cv_prog_TAR="$TAR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_TAR="${ac_tool_prefix}tar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +TAR=$ac_cv_prog_TAR +if test -n "$TAR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $TAR" >&5 +printf "%s\n" "$TAR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_TAR"; then + ac_ct_TAR=$TAR + # Extract the first word of "tar", so it can be a program name with args. +set dummy tar; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_TAR+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_TAR"; then + ac_cv_prog_ac_ct_TAR="$ac_ct_TAR" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_TAR="tar" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_TAR=$ac_cv_prog_ac_ct_TAR +if test -n "$ac_ct_TAR"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_TAR" >&5 +printf "%s\n" "$ac_ct_TAR" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_TAR" = x; then + TAR="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + TAR=$ac_ct_TAR + fi +else + TAR="$ac_cv_prog_TAR" +fi + + +# Find AMUSE libraries + + + + + + + + + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu +if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. +set dummy ${ac_tool_prefix}gcc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}gcc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "gcc", so it can be a program name with args. +set dummy gcc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="gcc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. +set dummy ${ac_tool_prefix}cc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}cc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + fi +fi +if test -z "$CC"; then + # Extract the first word of "cc", so it can be a program name with args. +set dummy cc; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else + ac_prog_rejected=no +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + if test "$as_dir$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then + ac_prog_rejected=yes + continue + fi + ac_cv_prog_CC="cc" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +if test $ac_prog_rejected = yes; then + # We found a bogon in the path, so make sure we never use it. + set dummy $ac_cv_prog_CC + shift + if test $# != 0; then + # We chose a different compiler from the bogus one. + # However, it has the same basename, so the bogon will be chosen + # first if we set CC to just the basename; use the full file name. + shift + ac_cv_prog_CC="$as_dir$ac_word${1+' '}$@" + fi +fi +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + for ac_prog in cl.exe + do + # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. +set dummy $ac_tool_prefix$ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="$ac_tool_prefix$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$CC" && break + done +fi +if test -z "$CC"; then + ac_ct_CC=$CC + for ac_prog in cl.exe +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$ac_ct_CC" && break +done + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +fi + +fi +if test -z "$CC"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}clang", so it can be a program name with args. +set dummy ${ac_tool_prefix}clang; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$CC"; then + ac_cv_prog_CC="$CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_CC="${ac_tool_prefix}clang" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +CC=$ac_cv_prog_CC +if test -n "$CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 +printf "%s\n" "$CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_prog_CC"; then + ac_ct_CC=$CC + # Extract the first word of "clang", so it can be a program name with args. +set dummy clang; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_ac_ct_CC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$ac_ct_CC"; then + ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_ac_ct_CC="clang" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +ac_ct_CC=$ac_cv_prog_ac_ct_CC +if test -n "$ac_ct_CC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 +printf "%s\n" "$ac_ct_CC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_ct_CC" = x; then + CC="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + CC=$ac_ct_CC + fi +else + CC="$ac_cv_prog_CC" +fi + +fi + + +test -z "$CC" && { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: in '$ac_pwd':" >&5 +printf "%s\n" "$as_me: error: in '$ac_pwd':" >&2;} +as_fn_error $? "no acceptable C compiler found in \$PATH +See 'config.log' for more details" "$LINENO" 5; } + +# Provide some information about the compiler. +printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5 +set X $ac_compile +ac_compiler=$2 +for ac_option in --version -v -V -qversion -version; do + { { ac_try="$ac_compiler $ac_option >&5" +case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +printf "%s\n" "$ac_try_echo"; } >&5 + (eval "$ac_compiler $ac_option >&5") 2>conftest.err + ac_status=$? + if test -s conftest.err; then + sed '10a\ +... rest of stderr output deleted ... + 10q' conftest.err >conftest.er1 + cat conftest.er1 >&5 + fi + rm -f conftest.er1 conftest.err + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } +done + +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether the compiler supports GNU C" >&5 +printf %s "checking whether the compiler supports GNU C... " >&6; } +if test ${ac_cv_c_compiler_gnu+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ +#ifndef __GNUC__ + choke me +#endif + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_compiler_gnu=yes +else case e in #( + e) ac_compiler_gnu=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +ac_cv_c_compiler_gnu=$ac_compiler_gnu + ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5 +printf "%s\n" "$ac_cv_c_compiler_gnu" >&6; } +ac_compiler_gnu=$ac_cv_c_compiler_gnu + +if test $ac_compiler_gnu = yes; then + GCC=yes +else + GCC= +fi +ac_test_CFLAGS=${CFLAGS+y} +ac_save_CFLAGS=$CFLAGS +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5 +printf %s "checking whether $CC accepts -g... " >&6; } +if test ${ac_cv_prog_cc_g+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_save_c_werror_flag=$ac_c_werror_flag + ac_c_werror_flag=yes + ac_cv_prog_cc_g=no + CFLAGS="-g" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_g=yes +else case e in #( + e) CFLAGS="" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + +else case e in #( + e) ac_c_werror_flag=$ac_save_c_werror_flag + CFLAGS="-g" + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main (void) +{ + + ; + return 0; +} +_ACEOF +if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_g=yes +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext + ac_c_werror_flag=$ac_save_c_werror_flag ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5 +printf "%s\n" "$ac_cv_prog_cc_g" >&6; } +if test $ac_test_CFLAGS; then + CFLAGS=$ac_save_CFLAGS +elif test $ac_cv_prog_cc_g = yes; then + if test "$GCC" = yes; then + CFLAGS="-g -O2" + else + CFLAGS="-g" + fi +else + if test "$GCC" = yes; then + CFLAGS="-O2" + else + CFLAGS= + fi +fi +ac_prog_cc_stdc=no +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C11 features" >&5 +printf %s "checking for $CC option to enable C11 features... " >&6; } +if test ${ac_cv_prog_cc_c11+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c11=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c11_program +_ACEOF +for ac_arg in '' -std=gnu11 +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c11=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c11" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c11" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c11" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c11" >&5 +printf "%s\n" "$ac_cv_prog_cc_c11" >&6; } + CC="$CC $ac_cv_prog_cc_c11" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c11 + ac_prog_cc_stdc=c11 ;; +esac +fi +fi +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C99 features" >&5 +printf %s "checking for $CC option to enable C99 features... " >&6; } +if test ${ac_cv_prog_cc_c99+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c99=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c99_program +_ACEOF +for ac_arg in '' -std=gnu99 -std=c99 -c99 -qlanglvl=extc1x -qlanglvl=extc99 -AC99 -D_STDC_C99= +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c99=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c99" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c99" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c99" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c99" >&5 +printf "%s\n" "$ac_cv_prog_cc_c99" >&6; } + CC="$CC $ac_cv_prog_cc_c99" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c99 + ac_prog_cc_stdc=c99 ;; +esac +fi +fi +if test x$ac_prog_cc_stdc = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $CC option to enable C89 features" >&5 +printf %s "checking for $CC option to enable C89 features... " >&6; } +if test ${ac_cv_prog_cc_c89+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_cv_prog_cc_c89=no +ac_save_CC=$CC +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ +$ac_c_conftest_c89_program +_ACEOF +for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" +do + CC="$ac_save_CC $ac_arg" + if ac_fn_c_try_compile "$LINENO" +then : + ac_cv_prog_cc_c89=$ac_arg +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam + test "x$ac_cv_prog_cc_c89" != "xno" && break +done +rm -f conftest.$ac_ext +CC=$ac_save_CC ;; +esac +fi + +if test "x$ac_cv_prog_cc_c89" = xno +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 +printf "%s\n" "unsupported" >&6; } +else case e in #( + e) if test "x$ac_cv_prog_cc_c89" = x +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 +printf "%s\n" "none needed" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5 +printf "%s\n" "$ac_cv_prog_cc_c89" >&6; } + CC="$CC $ac_cv_prog_cc_c89" ;; +esac +fi + ac_cv_prog_cc_stdc=$ac_cv_prog_cc_c89 + ac_prog_cc_stdc=c89 ;; +esac +fi +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + + + + + + + +if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then + if test -n "$ac_tool_prefix"; then + # Extract the first word of "${ac_tool_prefix}pkg-config", so it can be a program name with args. +set dummy ${ac_tool_prefix}pkg-config; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_path_PKG_CONFIG+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) case $PKG_CONFIG in + [\\/]* | ?:[\\/]*) + ac_cv_path_PKG_CONFIG="$PKG_CONFIG" # Let the user override the test with a path. + ;; + *) + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_path_PKG_CONFIG="$as_dir$ac_word$ac_exec_ext" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + ;; +esac ;; +esac +fi +PKG_CONFIG=$ac_cv_path_PKG_CONFIG +if test -n "$PKG_CONFIG"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $PKG_CONFIG" >&5 +printf "%s\n" "$PKG_CONFIG" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + +fi +if test -z "$ac_cv_path_PKG_CONFIG"; then + ac_pt_PKG_CONFIG=$PKG_CONFIG + # Extract the first word of "pkg-config", so it can be a program name with args. +set dummy pkg-config; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_path_ac_pt_PKG_CONFIG+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) case $ac_pt_PKG_CONFIG in + [\\/]* | ?:[\\/]*) + ac_cv_path_ac_pt_PKG_CONFIG="$ac_pt_PKG_CONFIG" # Let the user override the test with a path. + ;; + *) + as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_path_ac_pt_PKG_CONFIG="$as_dir$ac_word$ac_exec_ext" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + + ;; +esac ;; +esac +fi +ac_pt_PKG_CONFIG=$ac_cv_path_ac_pt_PKG_CONFIG +if test -n "$ac_pt_PKG_CONFIG"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_pt_PKG_CONFIG" >&5 +printf "%s\n" "$ac_pt_PKG_CONFIG" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + if test "x$ac_pt_PKG_CONFIG" = x; then + PKG_CONFIG="" + else + case $cross_compiling:$ac_tool_warned in +yes:) +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 +printf "%s\n" "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} +ac_tool_warned=yes ;; +esac + PKG_CONFIG=$ac_pt_PKG_CONFIG + fi +else + PKG_CONFIG="$ac_cv_path_PKG_CONFIG" +fi + +fi +if test -n "$PKG_CONFIG"; then + _pkg_min_version=0.9.0 + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking pkg-config is at least version $_pkg_min_version" >&5 +printf %s "checking pkg-config is at least version $_pkg_min_version... " >&6; } + if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + PKG_CONFIG="" + fi +fi + + + amuse_save_LIBS="$LIBS" + amuse_save_LIB_CFLAGS="$STOPCOND_CFLAGS" + amuse_save_LIB_LIBS="$STOPCOND_LIBS" + amuse_save_PKG_CONFIG_PATH="$PKG_CONFIG_PATH" + + # If we have an active virtualenv, make sure pkg-config searches it + if test "a${VIRTUAL_ENV}" != "a" + then + PKG_CONFIG_PATH="${VIRTUAL_ENV}/lib/pkgconfig:${PKG_CONFIG_PATH}" + fi + + # All AMUSE libs export C symbols + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + # Search for the library, first directly then fall back to pkg-config + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for library containing is_condition_enabled" >&5 +printf %s "checking for library containing is_condition_enabled... " >&6; } +if test ${ac_cv_search_is_condition_enabled+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_func_search_save_LIBS=$LIBS +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. + The 'extern "C"' is for builds by C++ compilers; + although this is not generally supported in C code supporting it here + has little cost and some practical benefit (sr 110532). */ +#ifdef __cplusplus +extern "C" +#endif +char is_condition_enabled (void); +int +main (void) +{ +return is_condition_enabled (); + ; + return 0; +} +_ACEOF +for ac_lib in '' stopcond +do + if test -z "$ac_lib"; then + ac_res="none required" + else + ac_res=-l$ac_lib + LIBS="-l$ac_lib $ac_func_search_save_LIBS" + fi + if ac_fn_c_try_link "$LINENO" +then : + ac_cv_search_is_condition_enabled=$ac_res +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext + if test ${ac_cv_search_is_condition_enabled+y} +then : + break +fi +done +if test ${ac_cv_search_is_condition_enabled+y} +then : + +else case e in #( + e) ac_cv_search_is_condition_enabled=no ;; +esac +fi +rm conftest.$ac_ext +LIBS=$ac_func_search_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_is_condition_enabled" >&5 +printf "%s\n" "$ac_cv_search_is_condition_enabled" >&6; } +ac_res=$ac_cv_search_is_condition_enabled +if test "$ac_res" != no +then : + test "$ac_res" = "none required" || LIBS="$ac_res $LIBS" + + FOUND_STOPCOND="yes" + STOPCOND_LIBS="$LIBS" + STOPCOND_CFLAGS="" + +else case e in #( + e) + +pkg_failed=no +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for STOPCOND" >&5 +printf %s "checking for STOPCOND... " >&6; } + +if test -n "$STOPCOND_CFLAGS"; then + pkg_cv_STOPCOND_CFLAGS="$STOPCOND_CFLAGS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"stopcond\""; } >&5 + ($PKG_CONFIG --exists --print-errors "stopcond") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then + pkg_cv_STOPCOND_CFLAGS=`$PKG_CONFIG --cflags "stopcond" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes +else + pkg_failed=yes +fi + else + pkg_failed=untried +fi +if test -n "$STOPCOND_LIBS"; then + pkg_cv_STOPCOND_LIBS="$STOPCOND_LIBS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ + { { printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"stopcond\""; } >&5 + ($PKG_CONFIG --exists --print-errors "stopcond") 2>&5 + ac_status=$? + printf "%s\n" "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then + pkg_cv_STOPCOND_LIBS=`$PKG_CONFIG --libs "stopcond" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes +else + pkg_failed=yes +fi + else + pkg_failed=untried +fi + + + +if test $pkg_failed = yes; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + +if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then + _pkg_short_errors_supported=yes +else + _pkg_short_errors_supported=no +fi + if test $_pkg_short_errors_supported = yes; then + STOPCOND_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "stopcond" 2>&1` + else + STOPCOND_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "stopcond" 2>&1` + fi + # Put the nasty error message in config.log where it belongs + echo "$STOPCOND_PKG_ERRORS" >&5 + + + FOUND_STOPCOND="no" + +elif test $pkg_failed = untried; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } + + FOUND_STOPCOND="no" + +else + STOPCOND_CFLAGS=$pkg_cv_STOPCOND_CFLAGS + STOPCOND_LIBS=$pkg_cv_STOPCOND_LIBS + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } + + FOUND_STOPCOND="yes" + +fi + ;; +esac +fi + + + ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + + PKG_CONFIG_PATH="$amuse_save_PKG_CONFIG_PATH" + LIBS="$amuse_save_LIBS" + + # If we have an active CONDA environment, assume that the lib is coming from + # there and add an additional flag so that .mod files can be found. Only really + # needed for stopcond and forsockets, and hopefully conda-forge will give us a + # better solution soon. + if test "${FOUND_STOPCOND}" == "yes" -a "x$CONDA_PREFIX" != "x" + then + STOPCOND_CFLAGS="${STOPCOND_CFLAGS} -I${CONDA_PREFIX}/include" + fi + + # If the user overrode the variables, go with what they set instead of + # what we just detected. + if test "x$amuse_save_LIB_CFLAGS" != "x" +then : + + STOPCOND_CFLAGS="$amuse_save_LIB_CFLAGS" + +fi + if test "x$amuse_save_LIB_LIBS" != "x" +then : + + STOPCOND_LIBS="$amuse_save_LIB_LIBS" + +fi + + + + + + + +# Find external dependencies +ac_ext=${ac_fc_srcext-f} +ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' +ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_fc_compiler_gnu + + + + + + + for ac_prog in mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c +do + # Extract the first word of "$ac_prog", so it can be a program name with args. +set dummy $ac_prog; ac_word=$2 +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 +printf %s "checking for $ac_word... " >&6; } +if test ${ac_cv_prog_MPIFC+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) if test -n "$MPIFC"; then + ac_cv_prog_MPIFC="$MPIFC" # Let the user override the test. +else +as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + for ac_exec_ext in '' $ac_executable_extensions; do + if as_fn_executable_p "$as_dir$ac_word$ac_exec_ext"; then + ac_cv_prog_MPIFC="$ac_prog" + printf "%s\n" "$as_me:${as_lineno-$LINENO}: found $as_dir$ac_word$ac_exec_ext" >&5 + break 2 + fi +done + done +IFS=$as_save_IFS + +fi ;; +esac +fi +MPIFC=$ac_cv_prog_MPIFC +if test -n "$MPIFC"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $MPIFC" >&5 +printf "%s\n" "$MPIFC" >&6; } +else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } +fi + + + test -n "$MPIFC" && break +done +test -n "$MPIFC" || MPIFC="$FC" + + ax_mpi_save_FC="$FC" + FC="$MPIFC" + + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking checking MPI Fortran flags" >&5 +printf %s "checking checking MPI Fortran flags... " >&6; } + ax_mpi_fc_flags="`$MPIFC -showme:compile 2>/dev/null| cut -d\ -f2-`" + ax_mpi_fc_libs="`$MPIFC -showme:link 2>/dev/null| cut -d\ -f2-`" + if test "x$ax_mpi_fc_flags" = "x" +then : + + ax_mpi_fc_flags="`$MPIFC -show -c 2>/dev/null| cut -d\ -f2-|sed s/-c\ //`" + ax_mpi_fc_libs="`$MPIFC -show 2>/dev/null| cut -d\ -f2-`" + if test "x$ax_mpi_fc_flags" = "x" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: could not determine c flags from show functions" >&5 +printf "%s\n" "could not determine c flags from show functions" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: flags found" >&5 +printf "%s\n" "flags found" >&6; } ;; +esac +fi + + +else case e in #( + e) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: flags found" >&5 +printf "%s\n" "flags found" >&6; } ;; +esac +fi + MPI_FCFLAGS="$ax_mpi_fc_flags" + MPI_FCLIBS="$ax_mpi_fc_libs" + + + + +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init" >&5 +printf %s "checking for MPI_Init... " >&6; } + cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + MPILIBS=" " + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } +else case e in #( + e) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +fi + + if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lfmpi" >&5 +printf %s "checking for MPI_Init in -lfmpi... " >&6; } +if test ${ac_cv_lib_fmpi_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lfmpi $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_fmpi_MPI_Init=yes +else case e in #( + e) ac_cv_lib_fmpi_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_fmpi_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_fmpi_MPI_Init" >&6; } +if test "x$ac_cv_lib_fmpi_MPI_Init" = xyes +then : + MPILIBS="-lfmpi" +fi + + fi + if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpichf90" >&5 +printf %s "checking for MPI_Init in -lmpichf90... " >&6; } +if test ${ac_cv_lib_mpichf90_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpichf90 $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpichf90_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpichf90_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpichf90_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpichf90_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpichf90_MPI_Init" = xyes +then : + MPILIBS="-lmpichf90" +fi + + fi + + +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpi" >&5 +printf %s "checking for MPI_Init in -lmpi... " >&6; } +if test ${ac_cv_lib_mpi_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpi $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpi_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpi_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpi_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpi_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpi_MPI_Init" = xyes +then : + MPILIBS="-lmpi" +fi + +fi +if test x = x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for MPI_Init in -lmpich" >&5 +printf %s "checking for MPI_Init in -lmpich... " >&6; } +if test ${ac_cv_lib_mpich_MPI_Init+y} +then : + printf %s "(cached) " >&6 +else case e in #( + e) ac_check_lib_save_LIBS=$LIBS +LIBS="-lmpich $LIBS" +cat > conftest.$ac_ext <<_ACEOF + program main + call MPI_Init + end +_ACEOF +if ac_fn_fc_try_link "$LINENO" +then : + ac_cv_lib_mpich_MPI_Init=yes +else case e in #( + e) ac_cv_lib_mpich_MPI_Init=no ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS ;; +esac +fi +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_mpich_MPI_Init" >&5 +printf "%s\n" "$ac_cv_lib_mpich_MPI_Init" >&6; } +if test "x$ac_cv_lib_mpich_MPI_Init" = xyes +then : + MPILIBS="-lmpich" +fi + +fi + +if test x != x"$MPILIBS"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for mpif.h" >&5 +printf %s "checking for mpif.h... " >&6; } + cat > conftest.$ac_ext <<_ACEOF + program main + include 'mpif.h' + end +_ACEOF +if ac_fn_fc_try_compile "$LINENO" +then : + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +printf "%s\n" "yes" >&6; } +else case e in #( + e) MPILIBS="" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 +printf "%s\n" "no" >&6; } ;; +esac +fi +rm -f core conftest.err conftest.$ac_objext conftest.beam conftest.$ac_ext +fi + +FC="$ax_mpi_save_FC" + + + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x = x"$MPILIBS"; then + + : +else + +printf "%s\n" "#define HAVE_MPI 1" >>confdefs.h + + : +fi + +ac_ext=c +ac_cpp='$CPP $CPPFLAGS' +ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' +ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' +ac_compiler_gnu=$ac_cv_c_compiler_gnu + + +# Generate output +ac_config_files="$ac_config_files config.mk" + +cat >confcache <<\_ACEOF +# This file is a shell script that caches the results of configure +# tests run on this system so they can be shared between configure +# scripts and configure runs, see configure's option --config-cache. +# It is not useful on other systems. If it contains results you don't +# want to keep, you may remove or edit it. +# +# config.status only pays attention to the cache file if you give it +# the --recheck option to rerun configure. +# +# 'ac_cv_env_foo' variables (set or unset) will be overridden when +# loading this file, other *unset* 'ac_cv_foo' will be assigned the +# following values. + +_ACEOF + +# The following way of writing the cache mishandles newlines in values, +# but we know of no workaround that is simple, portable, and efficient. +# So, we kill variables containing newlines. +# Ultrix sh set writes to stderr and can't be redirected directly, +# and sets the high bit in the cache file unless we assign to the vars. +( + for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do + eval ac_val=\$$ac_var + case $ac_val in #( + *${as_nl}*) + case $ac_var in #( + *_cv_*) { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5 +printf "%s\n" "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; + esac + case $ac_var in #( + _ | IFS | as_nl) ;; #( + BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( + *) { eval $ac_var=; unset $ac_var;} ;; + esac ;; + esac + done + + (set) 2>&1 | + case $as_nl`(ac_space=' '; set) 2>&1` in #( + *${as_nl}ac_space=\ *) + # 'set' does not quote correctly, so add quotes: double-quote + # substitution turns \\\\ into \\, and sed turns \\ into \. + sed -n \ + "s/'/'\\\\''/g; + s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p" + ;; #( + *) + # 'set' quotes correctly as required by POSIX, so do not add quotes. + sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" + ;; + esac | + sort +) | + sed ' + /^ac_cv_env_/b end + t clear + :clear + s/^\([^=]*\)=\(.*[{}].*\)$/test ${\1+y} || &/ + t end + s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/ + :end' >>confcache +if diff "$cache_file" confcache >/dev/null 2>&1; then :; else + if test -w "$cache_file"; then + if test "x$cache_file" != "x/dev/null"; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5 +printf "%s\n" "$as_me: updating cache $cache_file" >&6;} + if test ! -f "$cache_file" || test -h "$cache_file"; then + cat confcache >"$cache_file" + else + case $cache_file in #( + */* | ?:*) + mv -f confcache "$cache_file"$$ && + mv -f "$cache_file"$$ "$cache_file" ;; #( + *) + mv -f confcache "$cache_file" ;; + esac + fi + fi + else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5 +printf "%s\n" "$as_me: not updating unwritable cache $cache_file" >&6;} + fi +fi +rm -f confcache + +test "x$prefix" = xNONE && prefix=$ac_default_prefix +# Let make expand exec_prefix. +test "x$exec_prefix" = xNONE && exec_prefix='${prefix}' + +# Transform confdefs.h into DEFS. +# Protect against shell expansion while executing Makefile rules. +# Protect against Makefile macro expansion. +# +# If the first sed substitution is executed (which looks for macros that +# take arguments), then branch to the quote section. Otherwise, +# look for a macro that doesn't take arguments. +ac_script=' +:mline +/\\$/{ + N + s,\\\n,, + b mline +} +t clear +:clear +s/^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*([^)]*)\)[ ]*\(.*\)/-D\1=\2/g +t quote +s/^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)/-D\1=\2/g +t quote +b any +:quote +s/[][ `~#$^&*(){}\\|;'\''"<>?]/\\&/g +s/\$/$$/g +H +:any +${ + g + s/^\n// + s/\n/ /g + p +} +' +DEFS=`sed -n "$ac_script" confdefs.h` + + +ac_libobjs= +ac_ltlibobjs= +U= +for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue + # 1. Remove the extension, and $U if already installed. + ac_script='s/\$U\././;s/\.o$//;s/\.obj$//' + ac_i=`printf "%s\n" "$ac_i" | sed "$ac_script"` + # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR + # will be set to the directory where LIBOBJS objects are built. + as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext" + as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo' +done +LIBOBJS=$ac_libobjs + +LTLIBOBJS=$ac_ltlibobjs + + + +: "${CONFIG_STATUS=./config.status}" +ac_write_fail=0 +ac_clean_files_save=$ac_clean_files +ac_clean_files="$ac_clean_files $CONFIG_STATUS" +{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5 +printf "%s\n" "$as_me: creating $CONFIG_STATUS" >&6;} +as_write_fail=0 +cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1 +#! $SHELL +# Generated by $as_me. +# Run this file to recreate the current configuration. +# Compiler output produced by configure, useful for debugging +# configure, is in config.log if it exists. + +debug=false +ac_cs_recheck=false +ac_cs_silent=false + +SHELL=\${CONFIG_SHELL-$SHELL} +export SHELL +_ASEOF +cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1 +## -------------------- ## +## M4sh Initialization. ## +## -------------------- ## + +# Be more Bourne compatible +DUALCASE=1; export DUALCASE # for MKS sh +if test ${ZSH_VERSION+y} && (emulate sh) >/dev/null 2>&1 +then : + emulate sh + NULLCMD=: + # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which + # is contrary to our usage. Disable this feature. + alias -g '${1+"$@"}'='"$@"' + setopt NO_GLOB_SUBST +else case e in #( + e) case `(set -o) 2>/dev/null` in #( + *posix*) : + set -o posix ;; #( + *) : + ;; +esac ;; +esac +fi + + + +# Reset variables that may have inherited troublesome values from +# the environment. + +# IFS needs to be set, to space, tab, and newline, in precisely that order. +# (If _AS_PATH_WALK were called with IFS unset, it would have the +# side effect of setting IFS to empty, thus disabling word splitting.) +# Quoting is to prevent editors from complaining about space-tab. +as_nl=' +' +export as_nl +IFS=" "" $as_nl" + +PS1='$ ' +PS2='> ' +PS4='+ ' + +# Ensure predictable behavior from utilities with locale-dependent output. +LC_ALL=C +export LC_ALL +LANGUAGE=C +export LANGUAGE + +# We cannot yet rely on "unset" to work, but we need these variables +# to be unset--not just set to an empty or harmless value--now, to +# avoid bugs in old shells (e.g. pre-3.0 UWIN ksh). This construct +# also avoids known problems related to "unset" and subshell syntax +# in other old shells (e.g. bash 2.01 and pdksh 5.2.14). +for as_var in BASH_ENV ENV MAIL MAILPATH CDPATH +do eval test \${$as_var+y} \ + && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || : +done + +# Ensure that fds 0, 1, and 2 are open. +if (exec 3>&0) 2>/dev/null; then :; else exec 0&1) 2>/dev/null; then :; else exec 1>/dev/null; fi +if (exec 3>&2) ; then :; else exec 2>/dev/null; fi + +# The user is always right. +if ${PATH_SEPARATOR+false} :; then + PATH_SEPARATOR=: + (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { + (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || + PATH_SEPARATOR=';' + } +fi + + +# Find who we are. Look in the path if we contain no directory separator. +as_myself= +case $0 in #(( + *[\\/]* ) as_myself=$0 ;; + *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR +for as_dir in $PATH +do + IFS=$as_save_IFS + case $as_dir in #((( + '') as_dir=./ ;; + */) ;; + *) as_dir=$as_dir/ ;; + esac + test -r "$as_dir$0" && as_myself=$as_dir$0 && break + done +IFS=$as_save_IFS + + ;; +esac +# We did not find ourselves, most probably we were run as 'sh COMMAND' +# in which case we are not to be found in the path. +if test "x$as_myself" = x; then + as_myself=$0 +fi +if test ! -f "$as_myself"; then + printf "%s\n" "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2 + exit 1 +fi + + + +# as_fn_error STATUS ERROR [LINENO LOG_FD] +# ---------------------------------------- +# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are +# provided, also output the error to LOG_FD, referencing LINENO. Then exit the +# script with STATUS, using 1 if that was 0. +as_fn_error () +{ + as_status=$1; test $as_status -eq 0 && as_status=1 + if test "$4"; then + as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack + printf "%s\n" "$as_me:${as_lineno-$LINENO}: error: $2" >&$4 + fi + printf "%s\n" "$as_me: error: $2" >&2 + as_fn_exit $as_status +} # as_fn_error + + +# as_fn_set_status STATUS +# ----------------------- +# Set $? to STATUS, without forking. +as_fn_set_status () +{ + return $1 +} # as_fn_set_status + +# as_fn_exit STATUS +# ----------------- +# Exit the shell with STATUS, even in a "trap 0" or "set -e" context. +as_fn_exit () +{ + set +e + as_fn_set_status $1 + exit $1 +} # as_fn_exit + +# as_fn_unset VAR +# --------------- +# Portably unset VAR. +as_fn_unset () +{ + { eval $1=; unset $1;} +} +as_unset=as_fn_unset + +# as_fn_append VAR VALUE +# ---------------------- +# Append the text in VALUE to the end of the definition contained in VAR. Take +# advantage of any shell optimizations that allow amortized linear growth over +# repeated appends, instead of the typical quadratic growth present in naive +# implementations. +if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null +then : + eval 'as_fn_append () + { + eval $1+=\$2 + }' +else case e in #( + e) as_fn_append () + { + eval $1=\$$1\$2 + } ;; +esac +fi # as_fn_append + +# as_fn_arith ARG... +# ------------------ +# Perform arithmetic evaluation on the ARGs, and store the result in the +# global $as_val. Take advantage of shells that can avoid forks. The arguments +# must be portable across $(()) and expr. +if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null +then : + eval 'as_fn_arith () + { + as_val=$(( $* )) + }' +else case e in #( + e) as_fn_arith () + { + as_val=`expr "$@" || test $? -eq 1` + } ;; +esac +fi # as_fn_arith + + +if expr a : '\(a\)' >/dev/null 2>&1 && + test "X`expr 00001 : '.*\(...\)'`" = X001; then + as_expr=expr +else + as_expr=false +fi + +if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then + as_basename=basename +else + as_basename=false +fi + +if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then + as_dirname=dirname +else + as_dirname=false +fi + +as_me=`$as_basename -- "$0" || +$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \ + X"$0" : 'X\(//\)$' \| \ + X"$0" : 'X\(/\)' \| . 2>/dev/null || +printf "%s\n" X/"$0" | + sed '/^.*\/\([^/][^/]*\)\/*$/{ + s//\1/ + q + } + /^X\/\(\/\/\)$/{ + s//\1/ + q + } + /^X\/\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + +# Avoid depending upon Character Ranges. +as_cr_letters='abcdefghijklmnopqrstuvwxyz' +as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ' +as_cr_Letters=$as_cr_letters$as_cr_LETTERS +as_cr_digits='0123456789' +as_cr_alnum=$as_cr_Letters$as_cr_digits + + +# Determine whether it's possible to make 'echo' print without a newline. +# These variables are no longer used directly by Autoconf, but are AC_SUBSTed +# for compatibility with existing Makefiles. +ECHO_C= ECHO_N= ECHO_T= +case `echo -n x` in #((((( +-n*) + case `echo 'xy\c'` in + *c*) ECHO_T=' ';; # ECHO_T is single tab character. + xy) ECHO_C='\c';; + *) echo `echo ksh88 bug on AIX 6.1` > /dev/null + ECHO_T=' ';; + esac;; +*) + ECHO_N='-n';; +esac + +# For backward compatibility with old third-party macros, we provide +# the shell variables $as_echo and $as_echo_n. New code should use +# AS_ECHO(["message"]) and AS_ECHO_N(["message"]), respectively. +as_echo='printf %s\n' +as_echo_n='printf %s' + +rm -f conf$$ conf$$.exe conf$$.file +if test -d conf$$.dir; then + rm -f conf$$.dir/conf$$.file +else + rm -f conf$$.dir + mkdir conf$$.dir 2>/dev/null +fi +if (echo >conf$$.file) 2>/dev/null; then + if ln -s conf$$.file conf$$ 2>/dev/null; then + as_ln_s='ln -s' + # ... but there are two gotchas: + # 1) On MSYS, both 'ln -s file dir' and 'ln file dir' fail. + # 2) DJGPP < 2.04 has no symlinks; 'ln -s' creates a wrapper executable. + # In both cases, we have to default to 'cp -pR'. + ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || + as_ln_s='cp -pR' + elif ln conf$$.file conf$$ 2>/dev/null; then + as_ln_s=ln + else + as_ln_s='cp -pR' + fi +else + as_ln_s='cp -pR' +fi +rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file +rmdir conf$$.dir 2>/dev/null + + +# as_fn_mkdir_p +# ------------- +# Create "$as_dir" as a directory, including parents if necessary. +as_fn_mkdir_p () +{ + + case $as_dir in #( + -*) as_dir=./$as_dir;; + esac + test -d "$as_dir" || eval $as_mkdir_p || { + as_dirs= + while :; do + case $as_dir in #( + *\'*) as_qdir=`printf "%s\n" "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'( + *) as_qdir=$as_dir;; + esac + as_dirs="'$as_qdir' $as_dirs" + as_dir=`$as_dirname -- "$as_dir" || +$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$as_dir" : 'X\(//\)[^/]' \| \ + X"$as_dir" : 'X\(//\)$' \| \ + X"$as_dir" : 'X\(/\)' \| . 2>/dev/null || +printf "%s\n" X"$as_dir" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + test -d "$as_dir" && break + done + test -z "$as_dirs" || eval "mkdir $as_dirs" + } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir" + + +} # as_fn_mkdir_p +if mkdir -p . 2>/dev/null; then + as_mkdir_p='mkdir -p "$as_dir"' +else + test -d ./-p && rmdir ./-p + as_mkdir_p=false +fi + + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p +as_test_x='test -x' +as_executable_p=as_fn_executable_p + +# Sed expression to map a string onto a valid CPP name. +as_sed_cpp="y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g" +as_tr_cpp="eval sed '$as_sed_cpp'" # deprecated + +# Sed expression to map a string onto a valid variable name. +as_sed_sh="y%*+%pp%;s%[^_$as_cr_alnum]%_%g" +as_tr_sh="eval sed '$as_sed_sh'" # deprecated + + +exec 6>&1 +## ----------------------------------- ## +## Main body of $CONFIG_STATUS script. ## +## ----------------------------------- ## +_ASEOF +test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1 + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +# Save the log message, to keep $0 and so on meaningful, and to +# report actual input values of CONFIG_FILES etc. instead of their +# values after options handling. +ac_log=" +This file was extended by amuse-uclchem $as_me 1.0, which was +generated by GNU Autoconf 2.72. Invocation command line was + + CONFIG_FILES = $CONFIG_FILES + CONFIG_HEADERS = $CONFIG_HEADERS + CONFIG_LINKS = $CONFIG_LINKS + CONFIG_COMMANDS = $CONFIG_COMMANDS + $ $0 $@ + +on `(hostname || uname -n) 2>/dev/null | sed 1q` +" + +_ACEOF + +case $ac_config_files in *" +"*) set x $ac_config_files; shift; ac_config_files=$*;; +esac + + + +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +# Files that config.status was made for. +config_files="$ac_config_files" + +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +ac_cs_usage="\ +'$as_me' instantiates files and other configuration actions +from templates according to the current configuration. Unless the files +and actions are specified as TAGs, all are instantiated by default. + +Usage: $0 [OPTION]... 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"missing file argument" ;; + esac + as_fn_append CONFIG_FILES " '$ac_optarg'" + ac_need_defaults=false;; + --he | --h | --help | --hel | -h ) + printf "%s\n" "$ac_cs_usage"; exit ;; + -q | -quiet | --quiet | --quie | --qui | --qu | --q \ + | -silent | --silent | --silen | --sile | --sil | --si | --s) + ac_cs_silent=: ;; + + # This is an error. + -*) as_fn_error $? "unrecognized option: '$1' +Try '$0 --help' for more information." ;; + + *) as_fn_append ac_config_targets " $1" + ac_need_defaults=false ;; + + esac + shift +done + +ac_configure_extra_args= + +if $ac_cs_silent; then + exec 6>/dev/null + ac_configure_extra_args="$ac_configure_extra_args --silent" +fi + +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +if \$ac_cs_recheck; then + set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion + shift + \printf "%s\n" "running CONFIG_SHELL=$SHELL \$*" >&6 + CONFIG_SHELL='$SHELL' + export CONFIG_SHELL + exec "\$@" +fi + +_ACEOF +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +exec 5>>config.log +{ + echo + sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX +## Running $as_me. ## +_ASBOX + printf "%s\n" "$ac_log" +} >&5 + +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 + +# Handling of arguments. +for ac_config_target in $ac_config_targets +do + case $ac_config_target in + "config.mk") CONFIG_FILES="$CONFIG_FILES config.mk" ;; + + *) as_fn_error $? "invalid argument: '$ac_config_target'" "$LINENO" 5;; + esac +done + + +# If the user did not use the arguments to specify the items to instantiate, +# then the envvar interface is used. Set only those that are not. +# We use the long form for the default assignment because of an extremely +# bizarre bug on SunOS 4.1.3. +if $ac_need_defaults; then + test ${CONFIG_FILES+y} || CONFIG_FILES=$config_files +fi + +# Have a temporary directory for convenience. Make it in the build tree +# simply because there is no reason against having it here, and in addition, +# creating and moving files from /tmp can sometimes cause problems. +# Hook for its removal unless debugging. +# Note that there is a small window in which the directory will not be cleaned: +# after its creation but before its name has been assigned to '$tmp'. +$debug || +{ + tmp= ac_tmp= + trap 'exit_status=$? + : "${ac_tmp:=$tmp}" + { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status +' 0 + trap 'as_fn_exit 1' 1 2 13 15 +} +# Create a (secure) tmp directory for tmp files. + +{ + tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` && + test -d "$tmp" +} || +{ + tmp=./conf$$-$RANDOM + (umask 077 && mkdir "$tmp") +} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5 +ac_tmp=$tmp + +# Set up the scripts for CONFIG_FILES section. +# No need to generate them if there are no CONFIG_FILES. +# This happens for instance with './config.status config.h'. +if test -n "$CONFIG_FILES"; then + + +ac_cr=`echo X | tr X '\015'` +# On cygwin, bash can eat \r inside `` if the user requested igncr. +# But we know of no other shell where ac_cr would be empty at this +# point, so we can use a bashism as a fallback. +if test "x$ac_cr" = x; then + eval ac_cr=\$\'\\r\' +fi +ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' /dev/null` +if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then + ac_cs_awk_cr='\\r' +else + ac_cs_awk_cr=$ac_cr +fi + +echo 'BEGIN {' >"$ac_tmp/subs1.awk" && +_ACEOF + + +{ + echo "cat >conf$$subs.awk <<_ACEOF" && + echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' && + echo "_ACEOF" +} >conf$$subs.sh || + as_fn_error $? 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"could not setup config files machinery" "$LINENO" 5 +_ACEOF + +# VPATH may cause trouble with some makes, so we remove sole $(srcdir), +# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and +# trailing colons and then remove the whole line if VPATH becomes empty +# (actually we leave an empty line to preserve line numbers). +if test "x$srcdir" = x.; then + ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{ +h +s/// +s/^/:/ +s/[ ]*$/:/ +s/:\$(srcdir):/:/g +s/:\${srcdir}:/:/g +s/:@srcdir@:/:/g +s/^:*// +s/:*$// +x +s/\(=[ ]*\).*/\1/ +G +s/\n// +s/^[^=]*=[ ]*$// +}' +fi + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +fi # test -n "$CONFIG_FILES" + + +eval set X " :F $CONFIG_FILES " +shift +for ac_tag +do + case $ac_tag in + :[FHLC]) ac_mode=$ac_tag; continue;; + esac + case $ac_mode$ac_tag in + :[FHL]*:*);; + :L* | :C*:*) as_fn_error $? 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"could not create $ac_file" "$LINENO" 5 ;; + esac + ;; + esac + + ac_dir=`$as_dirname -- "$ac_file" || +$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ + X"$ac_file" : 'X\(//\)[^/]' \| \ + X"$ac_file" : 'X\(//\)$' \| \ + X"$ac_file" : 'X\(/\)' \| . 2>/dev/null || +printf "%s\n" X"$ac_file" | + sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ + s//\1/ + q + } + /^X\(\/\/\)[^/].*/{ + s//\1/ + q + } + /^X\(\/\/\)$/{ + s//\1/ + q + } + /^X\(\/\).*/{ + s//\1/ + q + } + s/.*/./; q'` + as_dir="$ac_dir"; as_fn_mkdir_p + ac_builddir=. + +case "$ac_dir" in +.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;; +*) + ac_dir_suffix=/`printf "%s\n" "$ac_dir" | sed 's|^\.[\\/]||'` + # A ".." for each directory in $ac_dir_suffix. + ac_top_builddir_sub=`printf "%s\n" "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'` + case $ac_top_builddir_sub in + "") ac_top_builddir_sub=. ac_top_build_prefix= ;; + *) ac_top_build_prefix=$ac_top_builddir_sub/ ;; + esac ;; +esac +ac_abs_top_builddir=$ac_pwd +ac_abs_builddir=$ac_pwd$ac_dir_suffix +# for backward compatibility: +ac_top_builddir=$ac_top_build_prefix + +case $srcdir in + .) # We are building in place. + ac_srcdir=. + ac_top_srcdir=$ac_top_builddir_sub + ac_abs_top_srcdir=$ac_pwd ;; + [\\/]* | ?:[\\/]* ) # Absolute name. + ac_srcdir=$srcdir$ac_dir_suffix; + ac_top_srcdir=$srcdir + ac_abs_top_srcdir=$srcdir ;; + *) # Relative name. + ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix + ac_top_srcdir=$ac_top_build_prefix$srcdir + ac_abs_top_srcdir=$ac_pwd/$srcdir ;; +esac +ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix + + + case $ac_mode in + :F) + # + # CONFIG_FILE + # + +_ACEOF + +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +# If the template does not know about datarootdir, expand it. +# FIXME: This hack should be removed a few years after 2.60. +ac_datarootdir_hack=; ac_datarootdir_seen= +ac_sed_dataroot=' +/datarootdir/ { + p + q +} +/@datadir@/p +/@docdir@/p +/@infodir@/p +/@localedir@/p +/@mandir@/p' +case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in +*datarootdir*) ac_datarootdir_seen=yes;; +*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*) + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5 +printf "%s\n" "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;} +_ACEOF +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 + ac_datarootdir_hack=' + s&@datadir@&$datadir&g + s&@docdir@&$docdir&g + s&@infodir@&$infodir&g + s&@localedir@&$localedir&g + s&@mandir@&$mandir&g + s&\\\${datarootdir}&$datarootdir&g' ;; +esac +_ACEOF + +# Neutralize VPATH when '$srcdir' = '.'. +# Shell code in configure.ac might set extrasub. +# FIXME: do we really want to maintain this feature? +cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 +ac_sed_extra="$ac_vpsub +$extrasub +_ACEOF +cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 +:t +/@[a-zA-Z_][a-zA-Z_0-9]*@/!b +s|@configure_input@|$ac_sed_conf_input|;t t +s&@top_builddir@&$ac_top_builddir_sub&;t t +s&@top_build_prefix@&$ac_top_build_prefix&;t t +s&@srcdir@&$ac_srcdir&;t t +s&@abs_srcdir@&$ac_abs_srcdir&;t t +s&@top_srcdir@&$ac_top_srcdir&;t t +s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t +s&@builddir@&$ac_builddir&;t t +s&@abs_builddir@&$ac_abs_builddir&;t t +s&@abs_top_builddir@&$ac_abs_top_builddir&;t t +$ac_datarootdir_hack +" +eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \ + >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5 + +test -z "$ac_datarootdir_hack$ac_datarootdir_seen" && + { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } && + { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \ + "$ac_tmp/out"`; test -z "$ac_out"; } && + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable 'datarootdir' +which seems to be undefined. Please make sure it is defined" >&5 +printf "%s\n" "$as_me: WARNING: $ac_file contains a reference to the variable 'datarootdir' +which seems to be undefined. Please make sure it is defined" >&2;} + + rm -f "$ac_tmp/stdin" + case $ac_file in + -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";; + *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";; + esac \ + || as_fn_error $? "could not create $ac_file" "$LINENO" 5 + ;; + + + + esac + +done # for ac_tag + + +as_fn_exit 0 +_ACEOF +ac_clean_files=$ac_clean_files_save + +test $ac_write_fail = 0 || + as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5 + + +# configure is writing to config.log, and then calls config.status. +# config.status does its own redirection, appending to config.log. +# Unfortunately, on DOS this fails, as config.log is still kept open +# by configure, so config.status won't be able to write to it; its +# output is simply discarded. So we exec the FD to /dev/null, +# effectively closing config.log, so it can be properly (re)opened and +# appended to by config.status. When coming back to configure, we +# need to make the FD available again. +if test "$no_create" != yes; then + ac_cs_success=: + ac_config_status_args= + test "$silent" = yes && + ac_config_status_args="$ac_config_status_args --quiet" + exec 5>/dev/null + $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false + exec 5>>config.log + # Use ||, not &&, to avoid exiting from the if with $? = 1, which + # would make configure fail if this is the last instruction. + $ac_cs_success || as_fn_exit 1 +fi +if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 +printf "%s\n" "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} +fi + + + diff --git a/src/amuse_uclchem/support/configure.ac b/src/amuse_uclchem/support/configure.ac new file mode 100644 index 0000000000..e8dbdc4af9 --- /dev/null +++ b/src/amuse_uclchem/support/configure.ac @@ -0,0 +1,39 @@ +AC_CONFIG_AUX_DIR([shared]) +AC_CONFIG_MACRO_DIRS([shared/m4]) + +AC_INIT([amuse-uclchem], [1.0]) + +# Pick up Conda env or virtualenv +AMUSE_VENV() + +# Set CPU_COUNT +AX_COUNT_CPUS() +AC_SUBST(CPU_COUNT) + +# Find the compiler(s) +AC_PROG_FC() +AX_FC_ISO_C_BINDING() + +# Find tools for creating static libraries +AC_CHECK_TARGET_TOOL([AR], [ar], [:]) +AS_IF([test $AR = ":"], [AC_MSG_ERROR([ar command not found.])]) + +AC_PROG_RANLIB() +AS_IF([test $RANLIB = ":"], [AC_MSG_ERROR([ranlib command not found.])]) + +# Find tools to download and unpack with +AMUSE_DOWNLOAD() +AC_CHECK_TOOL(TAR, tar) + +# Find AMUSE libraries +AMUSE_LIB_STOPCOND() + +# Find external dependencies +AC_LANG_PUSH([Fortran]) +AX_MPI() +AC_LANG_POP([Fortran]) + +# Generate output +AC_CONFIG_FILES([config.mk]) +AC_OUTPUT + diff --git a/src/amuse_uclchem/support/shared b/src/amuse_uclchem/support/shared new file mode 120000 index 0000000000..00817b0193 --- /dev/null +++ b/src/amuse_uclchem/support/shared @@ -0,0 +1 @@ +../../../support/shared \ No newline at end of file diff --git a/src/amuse_uclchem/tests/test_uclchem.py b/src/amuse_uclchem/tests/test_uclchem.py new file mode 100644 index 0000000000..3bf6213de0 --- /dev/null +++ b/src/amuse_uclchem/tests/test_uclchem.py @@ -0,0 +1,483 @@ +import numpy as np +from numpy.typing import NDArray +from uclchem.model import get_species_names as _get_species_names + +from amuse.datamodel import Particle, Particles +from amuse.support.testing.amusetest import TestWithMPI +from amuse.units import units as u +from amuse_uclchem.interface import UclchemInterface, Uclchem + + +class TestUclchemInterface(TestWithMPI): + + def test_getters_and_setters(self): + instance = self.new_instance_of_an_optional_code(UclchemInterface) + assert instance is not None + + instance.new_particle(1, 2, 3, 4) + instance.new_particle(11, 12, 13, 14) + + result = instance.get_state(0) + self.assertEquals(result['number_density'], 1) + self.assertEquals(result['temperature'], 2) + self.assertEquals(result['ionrate'], 3) + self.assertEquals(result['radfield'], 4) + + result = instance.get_state(1) + self.assertEquals(result['number_density'], 11) + self.assertEquals(result['temperature'], 12) + self.assertEquals(result['ionrate'], 13) + self.assertEquals(result['radfield'], 14) + + instance.set_state(0, 5, 6, 7, 8) + result = instance.get_state(0) + self.assertEquals(result['number_density'], 5) + self.assertEquals(result['temperature'], 6) + self.assertEquals(result['ionrate'], 7) + self.assertEquals(result['radfield'], 8) + + instance.set_number_density(0, 10) + result = instance.get_number_density(0) + self.assertEquals(result['number_density'], 10) + + instance.set_temperature(0, 20) + result = instance.get_temperature(0) + self.assertEquals(result['temperature'], 20) + + instance.set_ionrate(0, 30) + result = instance.get_ionrate(0) + self.assertEquals(result['ionrate'], 30) + + instance.set_radfield(0, 40) + result = instance.get_radfield(0) + self.assertEquals(result['radfield'], 40) + + instance.set_chemical_model('prestellarcore') + result = instance.get_chemical_model() + self.assertEquals(result['chem_model'], 'prestellarcore') + + H_index = _get_species_names().index('H') + result = instance.get_species_name(H_index) + self.assertEquals(result['name'], 'H') + result = instance.get_species_index('H') + self.assertEquals(result['species_index'], H_index) + + result = instance.get_time() + self.assertEquals(result['time'], 0) + + instance.commit_particles() + instance.set_abundance(0, 0, 5) + + result = instance.get_abundance(0, 0) + self.assertEquals(result['abundance'], 5) + + instance.stop() + +class TestUclchem(TestWithMPI): + + def generate_single_particle(self): + p = Particle() + p.number_density = 1e4 | u.cm**-3 + p.temperature = 10 | u.K + p.ionrate = 1.3e-17 | u.s**-1 + p.radfield = 1 | u.habing + + return p + + def generate_two_particles(self): + p = Particles(2) + p[0].number_density = 1e4 | u.cm**-3 + p[0].temperature = 10 | u.K + p[0].ionrate = 1.3e-17 | u.s**-1 + p[0].radfield = 1 | u.habing + + p[1].number_density = 1e5 | u.cm**-3 + p[1].temperature = 20 | u.K + p[1].ionrate = 1.3e-17 | u.s**-1 + p[1].radfield = 1 | u.habing + + return p + + def _validate_particle_state(self, particle1, particle2): + attributes = [ + 'key', 'number_density', 'temperature', 'ionrate', 'radfield' + ] + for attr in attributes: + self.assertEquals(getattr(particle1, attr), getattr(particle2, attr)) + + def test_parameters(self): + """Test parameters defined for Uclchem.""" + instance = self.new_instance_of_an_optional_code(Uclchem) + assert instance is not None + + self.assertEquals(instance.parameters.chem_model, 'cloud') + instance.parameters.chem_model = 'jshock' + self.assertEquals(instance.parameters.chem_model, 'jshock') + + instance.stop + + def test_methods(self): + """Test methods defined for Uclchem.""" + instance = self.new_instance_of_an_optional_code(Uclchem) + assert instance is not None + + p = self.generate_two_particles() + instance.particles.add_particles(p) + + new_state = [10 | u.cm**-3, 20 | u.K, 30 | u.s**-1, 40 | u.habing] + instance.set_state(0, *new_state) + self.assertEquals(instance.get_state(0), new_state) + + instance.set_number_density(1, 200 | u.cm**-3) + self.assertEquals(instance.get_number_density(1), 200 | u.cm**-3) + + instance.set_temperature(1, 200 | u.K) + self.assertEquals(instance.get_temperature(1), 200 | u.K) + + instance.set_ionrate(1, 200 | u.s**-1) + self.assertEquals(instance.get_ionrate(1), 200 | u.s**-1) + + instance.set_radfield(1, 200 | u.habing) + self.assertEquals(instance.get_radfield(1), 200 | u.habing) + + self.assertEquals(instance.get_number_of_particles(), 2) + self.assertEquals(len(instance.particles), 2) + + instance.stop() + + def test_add_particle(self): + """Test add single particle.""" + p = self.generate_single_particle() + instance = self.new_instance_of_an_optional_code(Uclchem) + assert instance is not None + + instance.commit_parameters() + instance.particles.add_particle(p) + + self.assertEquals(instance.get_number_of_particles(), 1) + self._validate_particle_state(instance.particles, p) + + instance.evolve_model(1e3 | u.yr) + self.assertAlmostEquals(instance.model_time, 1e3| u.yr) + + instance.evolve_model(2e3 | u.yr) + self.assertAlmostEquals(instance.model_time, 2e3| u.yr) + + instance.stop() + + def test_add_particles(self): + """Test add 2 particles.""" + p = self.generate_two_particles() + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + instance.commit_parameters() + instance.particles.add_particles(p) + instance.commit_particles() + + self.assertEquals(instance.get_number_of_particles(), 2) + + self._validate_particle_state(instance.particles, p) + + instance.stop() + + def test_add_and_remove_particle(self): + """Add then delete a particle.""" + p = self.generate_single_particle() + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + instance.commit_parameters() + instance.particles.add_particle(p) + + self.assertEquals(instance.get_number_of_particles(), 1) + + instance.particles.remove_particle(instance.particles[0]) + self.assertEquals(instance.get_number_of_particles(), 0) + self.assertEquals(instance.particles.is_empty(), True) + + instance.stop() + + def test_add_and_remove_particles(self): + """Test add and delete multiple particles.""" + p1 = self.generate_two_particles() + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + instance.commit_parameters() + instance.particles.add_particles(p1) + + self._validate_particle_state(instance.particles[0], p1[0]) + self._validate_particle_state(instance.particles[1], p1[1]) + + self.assertEquals(instance.get_number_of_particles(), 2) + + instance.particles.remove_particle(instance.particles[1]) + + self.assertEquals(instance.get_number_of_particles(), 1) + self._validate_particle_state(instance.particles[0], p1[0]) + + p2 = self.generate_two_particles() + instance.particles.add_particles(p2) + + self.assertEquals(instance.get_number_of_particles(), 3) + + instance.particles.remove_particles(instance.particles) + self.assertEquals(instance.get_number_of_particles(), 0) + self.assertEquals(instance.particles.is_empty(), True) + + instance.stop() + + def test_set_abundance(self): + """Test setting a single chemical abundance for a particle.""" + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + p = self.generate_two_particles() + instance.particles.add_particles(p) + instance.commit_particles() + + instance.set_abundance(0, 0, 5) + assert instance.get_abundance(0, 0) == 5 + + instance.set_abundance(1, 230, 0.45283) + assert instance.get_abundance(1, 230) == 0.45283 + + instance.stop() + + def test_set_abundances(self): + """Test setting all abundances of a particle from an array.""" + instance = self.new_instance_of_an_optional_code(Uclchem) + assert instance is not None + + p = self.generate_two_particles() + instance.particles.add_particles(p) + instance.commit_particles() + + abundances = np.random.rand(335) + + instance.set_abundances(0, abundances) + assert np.all(instance.particles.abundances[0,:] == abundances) + assert np.all(instance.particles.abundances[1,:] == np.zeros(335)) + + instance.stop() + + def test_evolve_abundances(self): + """ + Test evolving a cloud model and getting the abundances. + The expected abundances are from evolving a cloud model + in UCLCHEM for 1e6 years. + """ + # expected abundances + abundances = self._cloud_abundances() + p = self.generate_single_particle() + + instance = self.new_instance_of_an_optional_code(Uclchem) + assert instance is not None + + instance.set_chemical_model = 'cloud' + instance.commit_parameters() + + instance.particles.add_particle(p) + instance.commit_particles() + + instance.evolve_model(1e6 | u.yr) + + self.assertAlmostRelativeEquals( + instance.particles.abundances, + abundances, + places=3 + ) + + instance.stop() + + def test_evolve_model(self): + """Test evolve model.""" + p = Particle() + p.number_density = 10010.000467300415 | u.cm**-3 + p.temperature = 10.0 | u.K + p.ionrate = 1.3e-17 | u.s**-1 + p.radfield = 1 | u.habing + + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + instance.parameters.chem_model = 'cloud' + instance.commit_parameters() + + instance.particles.add_particle(p) + instance.commit_particles() + + instance.evolve_model(1e6 | u.yr) + abund = instance.get_abundances_by_name(0, ['H', 'H2', 'H2O', 'CO', 'CH3OH']) + + expected_abundances = [ + 0.33620836113812969, + 0.33172125743196351, + 8.0494187005664807e-08, + 1.8889925479868117e-05, + 4.2327403848735972e-08 + ] + + for a, ea in zip(abund, expected_abundances): + self.assertAlmostEqual(a, ea, places=3) + + instance.stop() + + def test_delete_particles_and_abundances(self): + + instance = self.new_instance_of_an_optional_code(Uclchem, redirection='none') + assert instance is not None + + N_particles = 5 + parts = Particles(N_particles) + parts.number_density = np.random.rand(N_particles)*1.e5 | u.cm**-3 + parts.temperature = np.random.rand(N_particles)*50 | u.K + parts.ionrate = np.random.rand(N_particles)*2.e-17 | u.s**-1 + parts.radfield = np.random.rand(N_particles)* 1 | u.habing + + instance.particles.add_particles(parts) + instance.commit_particles() + + instance.evolve_model(10 | u.yr) + + N_species = len(instance.species) + abundances = instance.particles.abundances + self.assertEquals(abundances.shape, (N_particles, N_species)) + self.assertEquals(instance.get_number_of_particles(), N_particles) + + instance.particles.remove_particle(parts[0]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-1) + self.assertEquals(instance.particles.abundances.shape, (N_particles-1, N_species)) + self.assertEquals(instance.particles.abundances.shape, abundances[1:, :].shape) + self.assertEquals(instance.particles.abundances, abundances[1:, :]) + + instance.particles.remove_particle(parts[1:3]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), N_particles-3) + self.assertEquals(instance.particles.abundances.shape, (N_particles-3, N_species)) + self.assertEquals(instance.particles.abundances, abundances[3:, :]) + + instance.particles.remove_particles(parts[3:]) + instance.recommit_particles() + self.assertEquals(instance.get_number_of_particles(), 0) + + instance.stop() + + def _cloud_abundances(self) -> NDArray: + """Expected abundances for `test_evolve_abundances`.""" + return np.array([ + 3.36208361e-01, 4.61369488e-09, 3.31721257e-01, + 4.38197269e-13, 8.15598279e-11, 9.99488396e-02, + 8.12645596e-10, 7.08904893e-15, 5.16888465e-07, + 1.08596360e-09, 1.42864545e-08, 2.87411021e-15, + 7.51917181e-14, 4.28870164e-15, 2.43828929e-06, + 7.64367332e-12, 2.32751032e-09, 2.11880518e-13, + 2.07864774e-09, 1.69586361e-15, 6.26769743e-08, + 2.14176267e-14, 1.95447035e-09, 3.62119077e-15, + 9.95313910e-06, 1.08827712e-15, 3.19971826e-16, + 1.41425281e-08, 1.45296428e-13, 5.97751984e-08, + 2.34661031e-12, 8.04941870e-08, 6.61902375e-13, + 1.38106082e-15, 1.04967399e-14, 1.69083916e-10, + 1.02816814e-16, 2.42403960e-07, 3.04048256e-10, + 1.59373896e-10, 1.10012344e-16, 2.34185638e-09, + 5.97915707e-15, 1.52678652e-08, 1.68430327e-15, + 1.00000000e-30, 1.42401375e-07, 1.92584172e-15, + 2.17230482e-10, 1.88899255e-05, 2.37826162e-15, + 4.12739559e-14, 4.71140877e-14, 5.51363025e-07, + 4.29484423e-16, 1.62878151e-07, 1.74484429e-09, + 6.55590999e-10, 4.83742510e-09, 5.07433258e-13, + 7.18248760e-14, 1.48392378e-11, 3.31173363e-13, + 9.40929842e-17, 1.00000000e-30, 2.85293144e-08, + 4.71694221e-14, 4.19197231e-08, 6.62870254e-14, + 6.67440901e-18, 6.81309212e-17, 9.05161233e-08, + 4.68145842e-14, 5.78310798e-10, 2.64124780e-16, + 3.13549379e-23, 1.83731822e-21, 3.69728355e-09, + 4.23274038e-08, 7.13897444e-17, 8.09475813e-08, + 3.93543661e-14, 8.67122161e-07, 6.45547050e-10, + 5.42757174e-24, 1.00000000e-30, 3.52056723e-16, + 6.15576448e-09, 9.59852066e-15, 2.89098995e-15, + 4.44510918e-18, 2.40100604e-28, 1.08090881e-09, + 2.31894307e-15, 4.65021399e-09, 3.36479803e-11, + 2.64818515e-17, 1.46659285e-17, 6.61889156e-10, + 4.16306160e-17, 1.09076083e-22, 9.60083451e-12, + 3.03973148e-16, 1.00000000e-30, 6.39989322e-19, + 2.59686442e-14, 1.17614589e-13, 1.14610689e-14, + 4.23244839e-20, 8.20593623e-12, 4.72827238e-29, + 7.65633899e-13, 1.93349106e-17, 3.50836869e-14, + 2.75426473e-17, 9.16135047e-08, 1.04951960e-08, + 8.45826983e-15, 3.71549951e-08, 4.16848094e-14, + 1.24134269e-12, 1.72535687e-16, 3.42776908e-15, + 2.06186354e-14, 3.47867744e-13, 1.23347409e-11, + 1.00000000e-30, 1.70761558e-30, 5.04999946e-10, + 1.97571198e-15, 2.07955038e-10, 7.27834444e-11, + 8.99151127e-10, 1.13268490e-14, 1.00000000e-30, + 5.23636252e-16, 7.38363975e-17, 3.90547699e-12, + 1.28497122e-14, 1.00000000e-30, 2.45410589e-17, + 9.93967711e-14, 3.43220021e-11, 2.63594772e-19, + 3.72559009e-11, 2.84731830e-20, 1.82023994e-17, + 1.67475377e-09, 7.08004715e-16, 2.25659956e-09, + 1.83422292e-16, 1.27789499e-17, 5.74988257e-16, + 4.78376156e-20, 1.86954507e-17, 1.00000000e-30, + 1.00000000e-30, 1.18344510e-09, 1.99915901e-15, + 2.49119252e-21, 2.82446160e-15, 6.24740166e-13, + 6.34475884e-17, 2.84464002e-22, 3.39152297e-18, + 6.71433206e-13, 8.49966441e-08, 2.76360972e-08, + 5.95745469e-07, 1.79935805e-08, 1.18679841e-08, + 2.19166767e-08, 7.41495683e-08, 2.10906273e-08, + 6.98784562e-08, 9.09456185e-08, 6.07303266e-08, + 2.85491979e-07, 3.95060440e-07, 2.77333339e-07, + 1.78960527e-06, 3.82798327e-11, 4.22886005e-08, + 8.86610783e-11, 2.62887086e-10, 5.70752305e-10, + 2.32801138e-08, 1.55266295e-11, 1.00000000e-30, + 7.20995402e-07, 8.08703927e-08, 4.10848978e-15, + 5.03905135e-11, 7.08319460e-09, 7.22438067e-07, + 1.00000000e-30, 6.09926753e-09, 5.40185899e-09, + 3.12683239e-07, 5.40110042e-09, 9.44190223e-08, + 7.77051809e-11, 7.92534953e-08, 4.70742600e-09, + 9.32059348e-09, 9.87977467e-07, 1.04796423e-08, + 1.76637860e-08, 2.90738188e-16, 8.15181613e-09, + 4.99451493e-08, 1.01805087e-10, 6.52538037e-10, + 1.00000000e-30, 1.00000000e-30, 3.16973729e-15, + 1.25303750e-14, 8.38216460e-13, 5.56708716e-30, + 1.13282940e-12, 1.06141268e-15, 5.07243371e-16, + 1.64761325e-09, 3.53772976e-10, 1.00756299e-08, + 8.50669669e-14, 3.01479565e-10, 5.58077771e-10, + 1.00000000e-30, 1.00000000e-30, 5.50830415e-10, + 6.71010205e-12, 8.12120301e-11, 6.25144379e-10, + 1.00000000e-30, 2.89429591e-13, 1.00000000e-30, + 1.00000000e-30, 1.55826125e-12, 3.41505470e-12, + 1.54530315e-18, 2.14583928e-10, 7.48361616e-11, + 1.59369142e-18, 1.00000000e-30, 2.19347288e-16, + 1.44832408e-11, 9.51156923e-12, 2.31687436e-11, + 8.15517852e-05, 1.68746788e-06, 5.05638365e-05, + 6.93419081e-05, 1.17684170e-06, 2.77788296e-06, + 3.49903872e-05, 3.09449791e-06, 1.22639785e-05, + 1.06388505e-06, 1.98452588e-06, 1.32063889e-04, + 6.15115450e-06, 4.69674911e-05, 4.36811141e-05, + 1.07550079e-08, 1.97100339e-06, 6.84028094e-09, + 2.66491950e-09, 4.27052528e-08, 1.74467671e-07, + 2.38486698e-11, 1.79092206e-30, 4.14562085e-05, + 8.08921123e-07, 1.61743262e-14, 7.65974568e-11, + 1.32272263e-06, 2.26880314e-05, 1.00000000e-30, + 1.42281179e-08, 2.24008062e-08, 4.29249914e-06, + 1.14509845e-07, 2.02489782e-06, 4.42298831e-10, + 2.49669031e-07, 5.69087142e-08, 3.74370934e-08, + 5.42766847e-06, 9.11148355e-09, 1.79417221e-06, + 6.40840009e-16, 7.58330458e-08, 6.29698010e-07, + 1.92383281e-08, 8.56157760e-09, 1.00000000e-30, + 8.59568297e-29, 3.67385099e-14, 1.21079285e-13, + 4.21315677e-12, 1.98330137e-28, 1.23674959e-11, + 1.44708575e-14, 3.66834429e-16, 1.91927063e-08, + 2.56955051e-08, 6.66885986e-08, 1.59981919e-13, + 1.14872472e-08, 1.07678807e-10, 3.16141397e-30, + 8.65813992e-29, 3.66219021e-10, 3.09393311e-11, + 2.79837692e-10, 5.26125295e-10, 8.53322603e-29, + 6.80960009e-13, 4.82137645e-30, 2.79294102e-30, + 1.91833676e-12, 1.30380503e-11, 2.22045128e-17, + 1.62078139e-09, 9.22369486e-11, 2.58972913e-17, + 3.06973321e-29, 6.28934028e-16, 2.52306481e-11, + 8.02107879e-12, 2.35467269e-11, 9.30394227e-06, + 5.72748519e-04, 7.02930465e-06, + ])