Issues

• Feature Suggestion: Community Showcase for Sharing plotgardener Examples and Layout Recipes

  PhanstielLab/plotgardener#144 · Filter by author zyllifeworld opened on May 15, 2026

• annoPixels error when using gene option in pgParams

  bug
  PhanstielLab/plotgardener#143 · Filter by author ksmetz opened on Mar 16, 2026

• plotLegend not showing

  bug
  PhanstielLab/plotgardener#142 · Filter by author Zepeng-Mu opened on Aug 29, 2025
  1

• plotManhattan requires data column order

  bug
  PhanstielLab/plotgardener#141 · Filter by author Zepeng-Mu opened on Jul 15, 2025

• Mirrored plot in plotHicSquare for interchromosomal interactions

  bug
  PhanstielLab/plotgardener#139 · Filter by author catroro opened on Jun 3, 2025

• New feature to reverse orientation of plots

  PhanstielLab/plotgardener#138 · Filter by author stephenrong opened on May 20, 2025

• GHA: R CMD check issues

  PhanstielLab/plotgardener#135 · Filter by author mikelove opened on Mar 27, 2025

• Add an annotation track for specific SNPs

  PhanstielLab/plotgardener#134 · Filter by author sarahbrotman opened on Jan 28, 2025

• Cool file BALANCE normalization

  PhanstielLab/plotgardener#133 · Filter by author claricehong opened on Jul 25, 2024
  2

• Fixing the range scale in plotMultiSignal() function

  bug
  PhanstielLab/plotgardener#132 · Filter by author Delta-43 opened on Jul 15, 2024

• Annotate multiple SNPs with rsID on a Manhattan plot

  PhanstielLab/plotgardener#109 · Filter by author Knetsy opened on Mar 27, 2024
  2

• Feature request: placing ggplot components separately

  enhancement
  PhanstielLab/plotgardener#105 · Filter by author pieterjanvc opened on Nov 17, 2023
  2

• readHic no data found

  PhanstielLab/plotgardener#97 · Filter by author nekramer opened on Aug 28, 2023
  3

• Support for labeling multiple genes that are close together

  enhancement
  PhanstielLab/plotgardener#96 · Filter by author sup27606 opened on Aug 24, 2023
  1

• plotPairsArches, archHeight, Y-axis

  PhanstielLab/plotgardener#95 · Filter by author Elliott77 opened on Aug 16, 2023
  4

• PlotTranscripts not annotating all the transcripts of a given gene

  enhancement
  PhanstielLab/plotgardener#93 · Filter by author NPSDC opened on Jul 21, 2023
  5

• Intrachromosomal triangle plots?

  genome-wide🧬
  PhanstielLab/plotgardener#83 · Filter by author ksmetz opened on Jun 2, 2023
  6

• Rotate plotGenes track vertically?

  enhancement
  PhanstielLab/plotgardener#82 · Filter by author Irenexzwen opened on May 19, 2023
  1

• New function for annotating a genomic span

  enhancement
  PhanstielLab/plotgardener#81 · Filter by author EricSDavis opened on May 18, 2023

• Stripe annotations?

  enhancement
  PhanstielLab/plotgardener#80 · Filter by author ksmetz opened on May 3, 2023
  4

• Copy Number feature request

  enhancement
  PhanstielLab/plotgardener#72 · Filter by author jessicadlang opened on Dec 9, 2022
  2

• Plot names of bed and bedpe elements

  enhancement
  PhanstielLab/plotgardener#71 · Filter by author ericahildebrand opened on Dec 8, 2022
  1

• More flexible colorby

  enhancement
  PhanstielLab/plotgardener#70 · Filter by author Zepeng-Mu opened on Dec 1, 2022
  2